Query gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 191
No_of_seqs 180 out of 6459
Neff 6.0
Searched_HMMs 13730
Date Wed Jun 1 09:40:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780585.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iura_ a.2.3.1 (A:) Hypotheti 99.4 2.7E-13 1.9E-17 105.1 6.5 61 128-188 12-73 (88)
2 d1fafa_ a.2.3.1 (A:) Large T a 99.3 1.5E-12 1.1E-16 100.2 7.4 56 129-188 8-65 (79)
3 d1xbla_ a.2.3.1 (A:) DnaJ chap 99.3 5.6E-13 4E-17 103.0 4.1 57 132-188 3-59 (75)
4 d1gh6a_ a.2.3.1 (A:) Large T a 99.3 8.7E-13 6.3E-17 101.7 4.2 54 130-187 6-61 (114)
5 d1wjza_ a.2.3.1 (A:) CSL-type 99.2 1.6E-12 1.1E-16 100.1 3.8 56 132-187 16-77 (94)
6 d1nz6a_ a.2.3.1 (A:) Auxilin J 99.1 2.4E-11 1.8E-15 92.3 2.5 56 134-189 35-93 (98)
7 d1hdja_ a.2.3.1 (A:) HSP40 {Hu 99.0 1.4E-10 1E-14 87.2 5.2 54 133-187 4-57 (77)
8 d1fpoa1 a.2.3.1 (A:1-76) HSC20 99.0 4.9E-10 3.6E-14 83.7 6.3 55 133-187 2-63 (76)
9 d2pvba_ a.39.1.4 (A:) Parvalbu 52.0 7.2 0.00052 17.2 5.9 102 70-180 2-106 (107)
10 d1xkga1 d.3.1.1 (A:4-305) Majo 44.0 9.4 0.00068 16.4 3.2 26 57-82 33-58 (302)
11 d1elka_ a.118.9.2 (A:) Tom1 pr 41.7 7.5 0.00055 17.1 2.4 44 142-190 106-149 (153)
12 d2glia2 g.37.1.1 (A:135-167) F 39.7 5.4 0.00039 18.0 1.4 26 27-62 3-29 (33)
13 d1ug2a_ a.4.1.3 (A:) 2610100b2 27.5 17 0.0013 14.7 2.9 26 142-167 66-91 (95)
14 d1ubdc4 g.37.1.1 (C:381-408) Y 26.5 10 0.00074 16.2 1.0 10 28-37 4-13 (28)
15 d1dvpa1 a.118.9.2 (A:1-145) Hr 25.0 10 0.00076 16.1 0.8 43 143-190 96-138 (145)
16 d1zfda_ g.37.1.1 (A:) SWI5 zin 24.3 12 0.00086 15.8 1.0 11 27-37 4-14 (32)
17 d1a1ia1 g.37.1.1 (A:103-131) Z 21.7 12 0.00091 15.6 0.7 10 28-37 4-13 (29)
18 d2glia3 g.37.1.1 (A:168-197) F 21.4 15 0.0011 15.2 1.0 10 28-37 4-13 (30)
19 d1hsma_ a.21.1.1 (A:) High mob 20.4 24 0.0017 13.8 2.8 33 42-79 2-34 (79)
No 1
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.39 E-value=2.7e-13 Score=105.08 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHHC
Q ss_conf 888976998617773288999999999999996578899798-7999999999999999962
Q gi|254780585|r 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~-~~ee~~~~I~~Ay~~Lk~S 188 (191)
....+++|+||||.+++|.++||++|++|+++||||+|+++. .++++|+.|++||++|++-
T Consensus 12 ~~~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~ 73 (88)
T d1iura_ 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQ 73 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 03799999995998898999999999999998650014100268999999999999999889
No 2
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=99.33 E-value=1.5e-12 Score=100.18 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=49.3
Q ss_pred HHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r 129 SMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 129 ~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
....++|+||||++++ +..+||++|++||++||||++ |+ +++|++|++||++|++.
T Consensus 8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~-g~---~e~~~~in~Ay~~L~d~ 65 (79)
T d1fafa_ 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GS---HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CC---HHHHHHHHHHHHHHCCH
T ss_conf 779999999099978898999999999999998672438-88---99999999999997789
No 3
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=99.31 E-value=5.6e-13 Score=102.98 Aligned_cols=57 Identities=40% Similarity=0.704 Sum_probs=52.8
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 769986177732889999999999999965788997987999999999999999962
Q gi|254780585|r 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 132 ~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
.+.|+||||++++|.++||++|++|+++||||+|.++..++++|+.|++||++|.+.
T Consensus 3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~ 59 (75)
T d1xbla_ 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 59 (75)
T ss_dssp CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 877998098999699999999999986502300689717999999998889702889
No 4
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}
Probab=99.29 E-value=8.7e-13 Score=101.72 Aligned_cols=54 Identities=26% Similarity=0.479 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 897699861777328--8999999999999996578899798799999999999999996
Q gi|254780585|r 130 MQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 130 ~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
...+-|+||||+.+| +..+||++|++||++||||++|. +++|++|++||.+|..
T Consensus 6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~----~e~F~~I~~AY~vLsd 61 (114)
T d1gh6a_ 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMED 61 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHHHCC
T ss_conf 8889999909998878899999999999998715430136----8999999879887078
No 5
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.25 E-value=1.6e-12 Score=100.06 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=50.9
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHHH
Q ss_conf 7699861777328899999999999999657889979------8799999999999999996
Q gi|254780585|r 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD------RGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 132 ~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~------~~~ee~~~~I~~Ay~~Lk~ 187 (191)
.+.|+||||+++++.++||++|++|+++||||+|.++ ..++++|+.|++||++|.+
T Consensus 16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d 77 (94)
T d1wjza_ 16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77 (94)
T ss_dssp SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58498839999959999999999999871032134531388888889999999999999499
No 6
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.06 E-value=2.4e-11 Score=92.27 Aligned_cols=56 Identities=21% Similarity=0.414 Sum_probs=49.8
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHHHHHCC
Q ss_conf 998617773288999999999999996578899798---79999999999999999628
Q gi|254780585|r 134 AFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR---GSEERFQAVIQAYKILKKSG 189 (191)
Q Consensus 134 Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~---~~ee~~~~I~~Ay~~Lk~Sg 189 (191)
.|.+|||...+|.++||++|++|++.+|||+++++. .+++.|+.|++||++|.+..
T Consensus 35 ~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~ 93 (98)
T d1nz6a_ 35 KWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93 (98)
T ss_dssp SCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 88556877668999999999999998664448980889888999999999999978997
No 7
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.02 E-value=1.4e-10 Score=87.20 Aligned_cols=54 Identities=35% Similarity=0.694 Sum_probs=49.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6998617773288999999999999996578899798799999999999999996
Q gi|254780585|r 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 (191)
Q Consensus 133 ~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~ 187 (191)
+-|+||||++++|.++|+++|++|++++|||++. +..++++|+.|++||++|.+
T Consensus 4 dyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~-~~~~~~~~~~i~~Ay~vLsd 57 (77)
T d1hdja_ 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSD 57 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCC-CTTHHHHHHHHHHHHHHTTC
T ss_pred CHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHCC
T ss_conf 7598859999959999999999999874610134-46699999999999988568
No 8
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}
Probab=98.97 E-value=4.9e-10 Score=83.73 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=46.9
Q ss_pred HHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 699861777328--8999999999999996578899798-----799999999999999996
Q gi|254780585|r 133 NAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDR-----GSEERFQAVIQAYKILKK 187 (191)
Q Consensus 133 ~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~-----~~ee~~~~I~~Ay~~Lk~ 187 (191)
+.|++|||+.++ +.++||++|++|+++||||++.+.. .+++.|+.|++||++|++
T Consensus 2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~d 63 (76)
T d1fpoa1 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63 (76)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86888799999998999999999999998482004421389999899999999999999199
No 9
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]}
Probab=51.98 E-value=7.2 Score=17.19 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHCCC-CCCCH
Q ss_conf 0159989999999631137765555-6542101210110000133333333210001588889769-9861777-32889
Q gi|254780585|r 70 FLGLSDDEVGRYQKEGVTGERFTWT-AHLYAERYPSNSSFFQDHRSSYGHFADRPDHRVGSMQFNA-FEILGLL-SDSSP 146 (191)
Q Consensus 70 F~gms~~ei~~~~r~~~tw~RPTw~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~A-l~~Lgl~-~~~~~ 146 (191)
|+|+|+++|.+.+...-....-.+. |-. ...............|..+..-....++..+... +..|+.. ...+.
T Consensus 2 ~~gls~~di~~~~~~~~~~gsi~~~eF~~---~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~l~~~~~~~~~ 78 (107)
T d2pvba_ 2 FAGLKDADVAAALAACSAADSFKHKEFFA---KVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTD 78 (107)
T ss_dssp CTTSCHHHHHHHHHHTCSTTCCCHHHHHH---HHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCH
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCHHHHHH---HHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCH
T ss_conf 77889999999997156789837999999---984265999999999876646999958499999999984012445999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999999999999657889979879999999999
Q gi|254780585|r 147 EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQ 180 (191)
Q Consensus 147 ~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~ 180 (191)
++|+.-+ +..-+|.+| .-..+ .|..+..
T Consensus 79 ~~~~~l~----~~~D~d~dG-~I~~~-EF~~~m~ 106 (107)
T d2pvba_ 79 AETKAFL----ADGDKDGDG-MIGVD-EFAAMIK 106 (107)
T ss_dssp HHHHHHH----HHHCTTCSS-SBCHH-HHHHHHH
T ss_pred HHHHHHH----HHHCCCCCC-CEEHH-HHHHHHC
T ss_conf 9999999----981899999-59599-9999972
No 10
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}
Probab=44.04 E-value=9.4 Score=16.43 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99998620248730159989999999
Q gi|254780585|r 57 LDHVKKYNKGYNYFLGLSDDEVGRYQ 82 (191)
Q Consensus 57 leHvreyNk~wnyF~gms~~ei~~~~ 82 (191)
+.+|+++|+.-|-|++|+.+|+.+..
T Consensus 33 ~~~I~~~n~~~N~fsDlt~eEf~~~~ 58 (302)
T d1xkga1 33 VKYVQSNGGAINHLSDLSLDEFKNRF 58 (302)
T ss_dssp HHHHHHHCCCCCTTTTSCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 99999853387867798999999986
No 11
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.71 E-value=7.5 Score=17.06 Aligned_cols=44 Identities=14% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3288999999999999996578899798799999999999999996289
Q gi|254780585|r 142 SDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 142 ~~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
...+..+||.+-.+|+..|+=.- .+++ .+..|..+|+.|+..|+
T Consensus 106 ~~~~~~~Vk~kil~li~~W~~~f-~~~p----~~~~i~~~y~~Lk~~G~ 149 (153)
T d1elka_ 106 KNNPPTIVHDKVLNLIQSWADAF-RSSP----DLTGVVTIYEDLRRKGL 149 (153)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTCT----TCHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-CCCC----CCHHHHHHHHHHHHCCC
T ss_conf 79972999999999999999986-6785----22599999999998779
No 12
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.72 E-value=5.4 Score=18.02 Aligned_cols=26 Identities=19% Similarity=0.631 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 767864757658-521788888744358999999986
Q gi|254780585|r 27 SICQWDNCQCIG-EYRAPVGSGAEEQFFLFCLDHVKK 62 (191)
Q Consensus 27 r~C~~~gC~~~G-~yrAPksr~~l~~y~wFCleHvre 62 (191)
=.|.|.||...| .|+| .|--+.|||-
T Consensus 3 y~C~W~~C~R~~~pf~a----------~YkLv~H~R~ 29 (33)
T d2glia2 3 FVCHWGGCSRELRPFKA----------QYMLVVHMRR 29 (33)
T ss_dssp CCCCBTTCTTTTCCCSS----------HHHHHHHTHH
T ss_pred EEEECCCCCCCCCCCHH----------HHHHHHHHHH
T ss_conf 58878998788986156----------8889999761
No 13
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.46 E-value=17 Score=14.68 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32889999999999999965788997
Q gi|254780585|r 142 SDSSPEEIRGRYKDLVKKHHPDANGG 167 (191)
Q Consensus 142 ~~~~~~~ik~~yk~lvk~~HPD~n~g 167 (191)
++-+..+||.||..|++.+|-..+.+
T Consensus 66 ~~Rs~~qvr~Rf~~Lm~lf~~~~e~~ 91 (95)
T d1ug2a_ 66 GNKTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999999999743248
No 14
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.51 E-value=10 Score=16.20 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q ss_conf 6786475765
Q gi|254780585|r 28 ICQWDNCQCI 37 (191)
Q Consensus 28 ~C~~~gC~~~ 37 (191)
.|+||||.+.
T Consensus 4 ~C~~~gC~K~ 13 (28)
T d1ubdc4 4 VCPFDGCNKK 13 (28)
T ss_dssp CCCSTTCCCC
T ss_pred CCCCCCCCCC
T ss_conf 8988996986
No 15
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.97 E-value=10 Score=16.12 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 288999999999999996578899798799999999999999996289
Q gi|254780585|r 143 DSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190 (191)
Q Consensus 143 ~~~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~Sg~ 190 (191)
..+...||.+-.+|+..|.=.- ++++ .+..|..+|+.|+..|+
T Consensus 96 ~~~~~~Vk~kil~li~~W~~~f-~~~~----~~~~i~~~y~~Lk~~G~ 138 (145)
T d1dvpa1 96 STPHENVRQKMLELVQTWAYAF-RSSD----KYQAIKDTMTILKAKGH 138 (145)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHT-TTCS----SCCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHH-CCCC----CCHHHHHHHHHHHHCCC
T ss_conf 7998799999999999999982-7885----53699999999998799
No 16
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.35 E-value=12 Score=15.79 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.4
Q ss_pred CCCCCCCCCCC
Q ss_conf 76786475765
Q gi|254780585|r 27 SICQWDNCQCI 37 (191)
Q Consensus 27 r~C~~~gC~~~ 37 (191)
=.|++|||.+.
T Consensus 4 ~~C~~pgC~k~ 14 (32)
T d1zfda_ 4 YSCDHPGCDKA 14 (32)
T ss_dssp BCCCCTTCCCC
T ss_pred EECCCCCCCCE
T ss_conf 07929998995
No 17
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.69 E-value=12 Score=15.63 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q ss_conf 6786475765
Q gi|254780585|r 28 ICQWDNCQCI 37 (191)
Q Consensus 28 ~C~~~gC~~~ 37 (191)
+|+++||.+.
T Consensus 4 ~C~~~gC~k~ 13 (29)
T d1a1ia1 4 ACPVESCDRR 13 (29)
T ss_dssp ECCSTTCCCE
T ss_pred ECCCCCCCCE
T ss_conf 7898998857
No 18
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.44 E-value=15 Score=15.17 Aligned_cols=10 Identities=20% Similarity=0.816 Sum_probs=8.1
Q ss_pred CCCCCCCCCC
Q ss_conf 6786475765
Q gi|254780585|r 28 ICQWDNCQCI 37 (191)
Q Consensus 28 ~C~~~gC~~~ 37 (191)
+|+|+||.+.
T Consensus 4 ~C~~~gCgk~ 13 (30)
T d2glia3 4 KCTFEGCRKS 13 (30)
T ss_dssp CCCSTTCCCC
T ss_pred ECCCCCCCCE
T ss_conf 6888998844
No 19
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=20.42 E-value=24 Score=13.81 Aligned_cols=33 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 78888874435899999998620248730159989999
Q gi|254780585|r 42 APVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVG 79 (191)
Q Consensus 42 APksr~~l~~y~wFCleHvreyNk~wnyF~gms~~ei~ 79 (191)
|||-| +.-|+.||.++-.+.-.. .-||+..||.
T Consensus 2 aPKrP--~say~~f~~~~r~~i~~~---~p~~~~~ei~ 34 (79)
T d1hsma_ 2 APKRP--PSAFFLFCSEYRPKIKGE---HPGLSIGDVA 34 (79)
T ss_dssp CCCCC--CCSHHHHHHHHHHHHHHH---CTTCCTTTHH
T ss_pred CCCCC--CCHHHHHHHHHHHHHHHH---CCCCCHHHHH
T ss_conf 59899--869999999999999988---8899899999
Done!