RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] (191 letters) >gnl|CDD|128567 smart00271, DnaJ, DnaJ molecular chaperone homology domain. Length = 60 Score = 64.2 bits (157), Expect = 2e-11 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD-RGSEERFQAVIQAYKILKK 187 + +EILG+ D+S +EI+ Y+ L K+HPD N GD +EE+F+ + +AY++L Sbjct: 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 >gnl|CDD|184601 PRK14279, PRK14279, chaperone protein DnaJ; Provisional. Length = 392 Score = 58.6 bits (142), Expect = 9e-10 Identities = 25/48 (52%), Positives = 36/48 (75%) Query: 138 LGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 LG+ SD+S EEI+ Y+ L ++ HPDAN GD +EERF+AV +A+ +L Sbjct: 15 LGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVL 62 >gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional. Length = 386 Score = 57.5 bits (139), Expect = 2e-09 Identities = 23/51 (45%), Positives = 39/51 (76%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILG+ +++ EEI+ Y+ L KK+HPD N GD+ +E++F+ + +AY+IL Sbjct: 8 YEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEIL 58 >gnl|CDD|182712 PRK10767, PRK10767, chaperone protein DnaJ; Provisional. Length = 371 Score = 56.7 bits (138), Expect = 3e-09 Identities = 21/52 (40%), Positives = 38/52 (73%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +E+LG+ ++S +EI+ Y+ L K+HPD N GD+ +EE+F+ + +AY++L Sbjct: 7 YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLS 58 >gnl|CDD|184610 PRK14295, PRK14295, chaperone protein DnaJ; Provisional. Length = 389 Score = 56.4 bits (136), Expect = 5e-09 Identities = 21/51 (41%), Positives = 37/51 (72%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +++LG+ D++ EI+ Y+ L +++HPDAN GD +EERF+ + +AY +L Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVL 62 >gnl|CDD|172782 PRK14294, PRK14294, chaperone protein DnaJ; Provisional. Length = 366 Score = 55.9 bits (135), Expect = 6e-09 Identities = 24/51 (47%), Positives = 36/51 (70%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILG+ D+S EEI+ Y+ L K+HPD N GD+ +EE F+ +AY++L Sbjct: 7 YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVL 57 >gnl|CDD|162815 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354 Score = 55.7 bits (135), Expect = 8e-09 Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILG+ D+S EEI+ Y+ L KK+HPD N D+ +EE+F+ + +AY++L Sbjct: 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRN-KDKEAEEKFKEINEAYEVL 52 >gnl|CDD|184605 PRK14284, PRK14284, chaperone protein DnaJ; Provisional. Length = 391 Score = 54.9 bits (132), Expect = 1e-08 Identities = 24/51 (47%), Positives = 36/51 (70%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 + ILG+ +SPEEI+ Y+ L K+HPD N GD +E+RF+ V +AY++L Sbjct: 4 YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVL 54 >gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional. Length = 369 Score = 53.6 bits (129), Expect = 3e-08 Identities = 21/52 (40%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKIL 185 +EILG+ +++ EEI+ YK LVK+ HPD + +R +E++F+ + +AY++L Sbjct: 7 YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVL 58 >gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional. Length = 372 Score = 53.1 bits (127), Expect = 4e-08 Identities = 22/52 (42%), Positives = 37/52 (71%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 ++ILG+ ++ EEI+ Y+ L K+HPD N G++ SEE+F+ +AY+IL+ Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILR 58 >gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional. Length = 380 Score = 50.6 bits (121), Expect = 3e-07 Identities = 20/52 (38%), Positives = 37/52 (71%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +E+LGL +S +EI+ ++ L K+HPD N G++ +EE+F+ + +AY++L Sbjct: 7 YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLS 58 >gnl|CDD|184609 PRK14293, PRK14293, chaperone protein DnaJ; Provisional. Length = 374 Score = 50.4 bits (121), Expect = 3e-07 Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILG+ D+ +E++ Y+ L +K+HPD N + G+E+RF+ + +AY++L Sbjct: 6 YEILGVSRDADKDELKRAYRRLARKYHPDVN-KEPGAEDRFKEINRAYEVL 55 >gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional. Length = 377 Score = 49.8 bits (119), Expect = 5e-07 Identities = 22/51 (43%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILGL D+S E+I+ Y+ L K+HPD N + +EE+F+ + +AY +L Sbjct: 8 YEILGLSKDASVEDIKKAYRKLAMKYHPDKN-KEPDAEEKFKEISEAYAVL 57 >gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional. Length = 369 Score = 49.7 bits (118), Expect = 5e-07 Identities = 22/56 (39%), Positives = 37/56 (66%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 M+ + +EIL + S+ E I+ Y+ L K+HPD N GD+ +EE+F+ + +AY +L Sbjct: 1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVL 56 >gnl|CDD|172769 PRK14281, PRK14281, chaperone protein DnaJ; Provisional. Length = 397 Score = 49.4 bits (118), Expect = 5e-07 Identities = 20/56 (35%), Positives = 37/56 (66%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 M+ + +E+LG+ + +EI+ Y+ L K+HPD N ++ +EE F+ V +AY++L Sbjct: 1 MKRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVL 56 >gnl|CDD|184607 PRK14291, PRK14291, chaperone protein DnaJ; Provisional. Length = 382 Score = 49.4 bits (118), Expect = 6e-07 Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +EILG+ +++ EEI+ Y+ L +K+HPD N + +EE+F+ + +AY++L Sbjct: 6 YEILGVSRNATQEEIKKAYRRLARKYHPDFN-KNPEAEEKFKEINEAYQVL 55 >gnl|CDD|172777 PRK14289, PRK14289, chaperone protein DnaJ; Provisional. Length = 386 Score = 48.3 bits (115), Expect = 1e-06 Identities = 18/51 (35%), Positives = 34/51 (66%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ ++ +EI+ Y+ ++HPD N GD+ +EE+F+ +AY +L Sbjct: 8 YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVL 58 >gnl|CDD|172789 PRK14301, PRK14301, chaperone protein DnaJ; Provisional. Length = 373 Score = 48.2 bits (115), Expect = 1e-06 Identities = 19/57 (33%), Positives = 38/57 (66%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 Q + +E+LG+ D+S +EI+ Y+ L ++HPD N + +E++F+ +AY++L+ Sbjct: 2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLR 58 >gnl|CDD|184602 PRK14280, PRK14280, chaperone protein DnaJ; Provisional. Length = 376 Score = 47.8 bits (114), Expect = 2e-06 Identities = 20/51 (39%), Positives = 37/51 (72%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ +S +EI+ Y+ L KK+HPD N + G++E+F+ + +AY++L Sbjct: 7 YEVLGVSKSASKDEIKKAYRKLSKKYHPDIN-KEEGADEKFKEISEAYEVL 56 >gnl|CDD|184598 PRK14276, PRK14276, chaperone protein DnaJ; Provisional. Length = 380 Score = 47.8 bits (114), Expect = 2e-06 Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 ++ LG+ D+S +EI+ Y+ L KK+HPD N + G+EE+++ V +AY+ L Sbjct: 7 YDRLGVSKDASQDEIKKAYRKLSKKYHPDIN-KEPGAEEKYKEVQEAYETL 56 >gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional. Length = 365 Score = 47.3 bits (112), Expect = 2e-06 Identities = 21/56 (37%), Positives = 37/56 (66%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 M+ + +EILGL +S +EI+ Y+ + K+HPD N G++ +E F+ +AY++L Sbjct: 1 MKRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVL 56 >gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional. Length = 365 Score = 46.8 bits (111), Expect = 3e-06 Identities = 20/57 (35%), Positives = 41/57 (71%), Gaps = 1/57 (1%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKIL 185 M + ++ILG+ ++S E+I+ +++L KK HPD + G++ +EE+F+ + +AY++L Sbjct: 1 MAKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL 57 >gnl|CDD|184613 PRK14299, PRK14299, chaperone protein DnaJ; Provisional. Length = 291 Score = 46.9 bits (111), Expect = 4e-06 Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 + ILG+ ++S +EI+ +K L +K+HPD N G+EE+F+ + +AY +L Sbjct: 7 YAILGVPKNASQDEIKKAFKKLARKYHPDVN-KSPGAEEKFKEINEAYTVL 56 >gnl|CDD|184608 PRK14292, PRK14292, chaperone protein DnaJ; Provisional. Length = 371 Score = 44.9 bits (106), Expect = 1e-05 Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ +S +EI+ Y+ L K+HPD N ++G+ E+F + +AY +L Sbjct: 5 YELLGVSRTASADEIKSAYRKLALKYHPDRN-KEKGAAEKFAQINEAYAVL 54 >gnl|CDD|173334 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional. Length = 421 Score = 43.7 bits (103), Expect = 3e-05 Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+L L D + EI+ Y+ L KHHPD GGD E+F+ + +AY++L Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPD-KGGD---PEKFKEISRAYEVL 77 >gnl|CDD|184600 PRK14278, PRK14278, chaperone protein DnaJ; Provisional. Length = 378 Score = 43.5 bits (103), Expect = 4e-05 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 137 ILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +LG+ ++S EI+ Y+ L ++ HPD N D ++E+F+ + AY++L Sbjct: 8 LLGVSRNASDAEIKRAYRKLARELHPDVN-PDEEAQEKFKEISVAYEVL 55 >gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional. Length = 378 Score = 43.3 bits (102), Expect = 4e-05 Identities = 18/51 (35%), Positives = 36/51 (70%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ ++ +EI+ Y+ L +K+HPD + + G+EE+F+ + +AY +L Sbjct: 8 YEVLGVDRNADKKEIKKAYRKLARKYHPDVS-EEEGAEEKFKEISEAYAVL 57 >gnl|CDD|172784 PRK14296, PRK14296, chaperone protein DnaJ; Provisional. Length = 372 Score = 42.6 bits (100), Expect = 6e-05 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ +S +EIR Y+ L K++HPD N + ++ + +A +L Sbjct: 7 YEVLGVSKTASEQEIRQAYRKLAKQYHPDLN-KSPDAHDKMVEINEAADVL 56 >gnl|CDD|184606 PRK14287, PRK14287, chaperone protein DnaJ; Provisional. Length = 371 Score = 40.0 bits (93), Expect = 4e-04 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ ++S +E++ Y+ L +K+HPD N +E++F+ V +AY L Sbjct: 7 YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP-DAEDKFKEVKEAYDTL 56 >gnl|CDD|163547 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. Length = 871 Score = 39.0 bits (90), Expect = 7e-04 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 +E+LG+ D+ +EI+ ++ L KK+HPD N + F + +A +L Sbjct: 5 YEVLGIDRDADEQEIKKAFRKLAKKYHPDRN-KAPDAASIFAEINEANDVL 54 >gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional. Length = 372 Score = 38.8 bits (90), Expect = 8e-04 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 3/58 (5%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPD-ANGGDRGSEERFQAVIQAYKILK 186 M + ++ILG+ +S +++ Y L K++HPD + D +E++F+ + AY +LK Sbjct: 1 MSQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKD--AEKKFKEINAAYDVLK 56 >gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional. Length = 306 Score = 37.5 bits (87), Expect = 0.002 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 130 MQF-NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 M+ + + I+G+ + I+ Y+ L +K+HPD + + +E RF+ V +A+++L Sbjct: 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS-KEPDAEARFKEVAEAWEVLSDE 59 >gnl|CDD|173392 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional. Length = 116 Score = 34.1 bits (78), Expect = 0.022 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Query: 134 AFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGG 167 A++IL + +S E IR +K L+ ++HPD NGG Sbjct: 67 AYKILNISPTASKERIREAHKQLMLRNHPD-NGG 99 >gnl|CDD|129797 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock. Length = 157 Score = 31.0 bits (70), Expect = 0.21 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 7/44 (15%) Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVI------QAYKILK 186 + RY+DL +++HPD ++E+ AV QAY+ LK Sbjct: 8 LSLRYQDLQRQYHPD-KFASGSAQEQLAAVQQSTTLNQAYQTLK 50 >gnl|CDD|181850 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional. Length = 267 Score = 30.6 bits (70), Expect = 0.25 Identities = 11/31 (35%), Positives = 21/31 (67%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPD 163 +A+++LG+ +EI+ Y+ L+ +HHPD Sbjct: 201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231 >gnl|CDD|168271 PRK05852, PRK05852, acyl-CoA synthetase; Validated. Length = 534 Score = 29.1 bits (65), Expect = 0.66 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%) Query: 138 LGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI 179 LG LS + IRGR K+L+ + GG++ S ER + V+ Sbjct: 415 LGSLSAAGDLSIRGRIKELINR------GGEKISPERVEGVL 450 >gnl|CDD|162977 TIGR02687, TIGR02687, conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688. Length = 844 Score = 29.0 bits (65), Expect = 0.68 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER-FQAVIQAYKILKK 187 + F A +++ D E IR + + + DA G + SEE F+AV + LKK Sbjct: 547 GLAFKADDLMRYKRDEGRELIRDKRVIYIYHNKIDATGDKQSSEENVFEAVEETIVELKK 606 >gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional. Length = 171 Score = 28.7 bits (65), Expect = 0.90 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 20/63 (31%) Query: 133 NAFEI-LGLLSDSSPEEIRGRYKDLVKKHHPD--ANGGDRGSEERFQAVIQ------AYK 183 ++I LL+ RY++L ++ HPD AN +R ER AV Q AY+ Sbjct: 11 ARYDIDTQLLAS--------RYQELQRQFHPDKFANASER---ERLLAVQQAATINDAYQ 59 Query: 184 ILK 186 LK Sbjct: 60 TLK 62 >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional. Length = 1136 Score = 28.6 bits (63), Expect = 0.98 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKIL 185 ++ILG+ ++ +EI RY L + ++P G+ G +F+ + +AY+IL Sbjct: 576 YDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGF-HKFKKINEAYQIL 625 >gnl|CDD|140235 PTZ00208, PTZ00208, 65 kDa invariant surface glycoprotein; Provisional. Length = 436 Score = 27.2 bits (60), Expect = 2.8 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 141 LSDSSPE---EIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183 LSDS E EI + KD + K P+A +E+ Q V +A K Sbjct: 98 LSDSDTEKVKEIFEKAKDGIAKQLPEAKKAGEEAEKLHQEVKKAAK 143 >gnl|CDD|166894 PRK00294, hscB, co-chaperone HscB; Provisional. Length = 173 Score = 26.7 bits (59), Expect = 3.4 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Query: 147 EEIRGRYKDLVKKHHPD--ANGGDRGSE---ERFQAVIQAYKILK 186 +++ RY++L ++ HPD A+ +R ER ++ +AY+ LK Sbjct: 21 DQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLK 65 >gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional. Length = 342 Score = 26.7 bits (60), Expect = 3.6 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Query: 69 YFLGLSDDEVGRYQKEGVTGERFTWTAHLYA 99 YFL + +G Y +TG R + LYA Sbjct: 150 YFLSRAPGALGTYL--ALTGARISAADALYA 178 >gnl|CDD|169269 PRK08192, PRK08192, aspartate carbamoyltransferase; Provisional. Length = 338 Score = 26.6 bits (59), Expect = 4.6 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 15/49 (30%) Query: 153 YKDLVKKHHPDA---------------NGGDRGSEERFQAVIQAYKILK 186 Y D++ HPDA NGGD +E QA++ + I K Sbjct: 100 YSDVIAMRHPDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQK 148 >gnl|CDD|184630 PRK14334, PRK14334, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional. Length = 440 Score = 25.9 bits (57), Expect = 5.8 Identities = 18/43 (41%), Positives = 18/43 (41%), Gaps = 4/43 (9%) Query: 85 GVTGERFTWTAHLYAE-RYPSNSSFFQDHRS---SYGHFADRP 123 G T E F T LY E Y S F R SY HF D P Sbjct: 300 GETEEDFQETLSLYDEVGYDSAYMFIYSPRPGTPSYKHFQDLP 342 >gnl|CDD|180021 PRK05331, PRK05331, putative phosphate acyltransferase; Provisional. Length = 334 Score = 26.2 bits (59), Expect = 6.0 Identities = 10/21 (47%), Positives = 11/21 (52%) Query: 163 DANGGDRGSEERFQAVIQAYK 183 DA GGD G E +QA K Sbjct: 7 DAMGGDFGPEVVVPGALQALK 27 >gnl|CDD|179994 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase; Provisional. Length = 262 Score = 26.2 bits (59), Expect = 6.1 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Query: 169 RG-SEERFQAVIQAYKILKKSG 189 RG S E A+ +AYK+L +SG Sbjct: 202 RGFSREEIHALRRAYKLLYRSG 223 >gnl|CDD|177441 PHA02624, PHA02624, large T antigen; Provisional. Length = 647 Score = 26.1 bits (58), Expect = 6.6 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGFC 191 +R Y K++HPD GGD EE+ + + YK L++ Sbjct: 30 MRKAYLRKCKEYHPD-KGGD---EEKMKRLNSLYKKLQEGVKS 68 >gnl|CDD|177528 PHA03102, PHA03102, Small T antigen; Reviewed. Length = 153 Score = 25.8 bits (57), Expect = 6.9 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Query: 149 IRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 +R Y + HPD GGD EE+ + + YK ++S Sbjct: 24 MRKAYLRKCLEFHPD-KGGD---EEKMKELNTLYKKFRES 59 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0487 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,256,696 Number of extensions: 202974 Number of successful extensions: 448 Number of sequences better than 10.0: 1 Number of HSP's gapped: 433 Number of HSP's successfully gapped: 54 Length of query: 191 Length of database: 5,994,473 Length adjustment: 88 Effective length of query: 103 Effective length of database: 4,092,969 Effective search space: 421575807 Effective search space used: 421575807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.2 bits)