RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ
family protein [Candidatus Liberibacter asiaticus str. psy62]
(191 letters)
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding, cytoplasm,
nucleotide-binding, nucleus, phosphorylation; HET: ADP;
1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B*
1nz6_A (B:)
Length = 92
Score = 54.9 bits (132), Expect = 6e-09
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQAYKILK 186
++ +G+ +PE+++ Y+ V HP G + ++ F + A+ +
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFE 90
>2guz_B Mitochondrial import inner membrane translocase subunit
TIM16; DNAJ-fold, chaperone, protein transport; HET:
FLC; 2.00A {Saccharomyces cerevisiae} (B:)
Length = 65
Score = 51.3 bits (123), Expect = 9e-08
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 133 NAFEILGL---LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ +IL + D + ++I R+ L + + + GS V +A + LK
Sbjct: 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLK 57
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} (A:)
Length = 88
Score = 50.8 bits (121), Expect = 1e-07
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD-RGSEERFQAVIQAYKILKK 187
S+ ++ E + + L K HPD N + + E F+ + L+K
Sbjct: 13 SILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK 72
Query: 188 S 188
Sbjct: 73 Q 73
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos
taurus} (A:)
Length = 182
Score = 51.1 bits (121), Expect = 1e-07
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 9/115 (7%)
Query: 81 YQKEGVTGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFADRPDHRVGSMQF------NA 134
+ T E + +M
Sbjct: 60 FNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETK 119
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR---GSEERFQAVIQAYKILK 186
++ +G+ +PE+++ Y+ V HPD G ++ F + A+ +
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
>3hho_A CO-chaperone protein HSCB homolog; structural genomics,
IDP01304, center for structural genomics of infectious
diseases, CSGI; 2.15A {Vibrio cholerae} (A:1-85)
Length = 85
Score = 46.8 bits (111), Expect = 2e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 129 SMQFNAFEILGLLSDSS--PEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQA 181
S N FE+ GL + +++ L K+ HPD + ++ + A
Sbjct: 1 SNAXNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDA 60
Query: 182 YKILK 186
Y+ LK
Sbjct: 61 YQTLK 65
>2guz_A Mitochondrial import inner membrane translocase subunit
TIM14; DNAJ-fold, chaperone, protein transport; HET:
FLC; 2.00A {Saccharomyces cerevisiae} (A:)
Length = 71
Score = 44.8 bits (106), Expect = 8e-06
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 133 NAFEILGLLSD-SSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
A +IL L + + ++++ ++ ++ +HPD GS + +A L+
Sbjct: 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFLE 65
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J
domain, all helix protein, chaperone, structural
genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 99
Score = 44.6 bits (105), Expect = 9e-06
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 117 GHFADRPDHRVGSM-QFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERF 175
G S + +++LG+ S ++ +I+ Y +HPD N G + ERF
Sbjct: 1 GSSGSSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERF 60
Query: 176 QAVIQAYKILK 186
+ QAY +L
Sbjct: 61 TRISQAYVVLG 71
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae} (A:)
Length = 92
Score = 43.4 bits (102), Expect = 2e-05
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+++LG+ ++ +E++ Y+ K+HPD GD E+F+ + +A++IL
Sbjct: 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILN 59
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} (A:1-81)
Length = 81
Score = 43.4 bits (102), Expect = 2e-05
Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 7/61 (11%)
Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQAYKIL 185
+ F + GL + + R++DL +++HPD +E ++ + QA++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 186 K 186
+
Sbjct: 62 R 62
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, PSI-2, protein
structure initiative; 1.86A {Caenorhabditis elegans}
(A:)
Length = 73
Score = 42.9 bits (101), Expect = 3e-05
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+++LG+ D+S E++ Y+ + K HPD N E+F+ + QAY++L
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAYEVLS 59
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain,
RAS-associated protein RAP1, structural genomics,
NPPSFA; NMR {Homo sapiens} (A:)
Length = 90
Score = 42.7 bits (100), Expect = 3e-05
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 104 SNSSFFQDHRSSYGHFADRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPD 163
S++SF ++ + + D +++LG+ +S +E+ Y+ L HPD
Sbjct: 8 SSASFTKEQADAIRRIRNSKDS---------WDMLGVKPGASRDEVNKAYRKLAVLLHPD 58
Query: 164 ANGGDRGSEERFQAVIQAYKILK 186
GSE+ F+AV+ A L
Sbjct: 59 KCVAP-GSEDAFKAVVNARTALL 80
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1,
structural genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
(A:)
Length = 79
Score = 42.7 bits (100), Expect = 3e-05
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ ++ILG+ ++S +EI+ Y L KK+HPD N D ++E+F + +AY++L
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 88
Score = 42.7 bits (100), Expect = 3e-05
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ ++ILG+ +S +I+ + L K+HPD N +E +F+ + +AY+ L
Sbjct: 8 SYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLS 60
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus} (A:)
Length = 88
Score = 41.9 bits (98), Expect = 6e-05
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++ F+ + +LG+ +S +I+ YK L ++ HPD N G+E+RF + +AY+IL
Sbjct: 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDP-GAEDRFIQISKAYEILS 70
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens}
(A:)
Length = 77
Score = 41.5 bits (97), Expect = 8e-05
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ ++ LGL +S EEI+ Y+ ++HPD + G+EE+F+ + +AY +L
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLS 56
>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor;
structural genomics medical relevance, protein structure
initiative, PSI-2; 3.00A {Homo sapiens} (A:1-124)
Length = 124
Score = 41.3 bits (96), Expect = 8e-05
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 16/91 (17%)
Query: 103 PSNSSFFQDHRSSYGHFADRPDHRVGSMQFNAFEILGL--LSDSSPEEIRGRYKDLVKKH 160
FF + D+ F + +++ RY+ L +
Sbjct: 23 GREDRFFCPQCRALQAPDPTRDY---------FSLXDCNRSFRVDTAKLQHRYQQLQRLV 73
Query: 161 HPDANGGDRGSE-----ERFQAVIQAYKILK 186
HPD +E + V AYK L
Sbjct: 74 HPDFFSQRSQTEKDFSEKHSTLVNDAYKTLL 104
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 112
Score = 40.9 bits (95), Expect = 1e-04
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 115 SYGHFADRPDHRVGSM-QFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEE 173
S G S + + +LG SS E+I +K + HPD + + + E
Sbjct: 2 SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVE 61
Query: 174 RFQAVIQAYKILK 186
FQ + +A +IL
Sbjct: 62 TFQKLQKAKEILT 74
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI, chaperone; NMR
{Mus musculus} (A:)
Length = 94
Score = 40.1 bits (93), Expect = 2e-04
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG------SEERFQAVIQAY 182
+++ + + ILG ++ +++ +Y+ L+ +HPD D ++F + QA+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 183 KILK 186
KIL
Sbjct: 73 KILG 76
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 78
Score = 39.2 bits (91), Expect = 4e-04
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ +EILG+ +S E+++ Y+ L K HPD N G+ E F+A+ AY +L
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLS 60
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin
of helices, viral protein; NMR {Murine polyomavirus}
(A:)
Length = 79
Score = 39.1 bits (91), Expect = 4e-04
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSD--SSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
E+L L ++ YK HPD G Q + + K
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA----LMQELNSLWGTFK 63
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens} (A:)
Length = 92
Score = 38.9 bits (90), Expect = 5e-04
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-SEERFQAVIQAYKILK 186
N +E+LG+ + +SPE+I+ Y+ L + HPD N ++ +E++F+ V +AY++L
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLS 64
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} (A:)
Length = 82
Score = 38.5 bits (89), Expect = 6e-04
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186
+ +E+L + +S E I+ Y+ L K HPD N ++ +E RF+ V +AY++L
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLS 64
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} (A:1-74)
Length = 74
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSD--SSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++LGL + +R Y K+ HPD G + + + + YK ++
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEE----KMKKMNTLYKKME 60
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus} (A:)
Length = 109
Score = 35.1 bits (80), Expect = 0.007
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKI 184
+ + +LGL +++ ++I+ Y+ L K+HPD N + + ++F+ + A+ I
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAI 69
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK;
NMR {Escherichia coli} (A:)
Length = 103
Score = 34.3 bits (78), Expect = 0.012
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKI 184
+ +EILG+ + EIR YK L K+HPD N GD+ +E +F+ + +AY++
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEV 55
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulator/viral protein complex; 3.10A {Simian virus 40}
PDB: 2pkg_C (E:1-92)
Length = 92
Score = 33.4 bits (76), Expect = 0.017
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSDSSP--EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++LGL + +R Y K+ HPD G + E+ + + YK ++
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 63
>1f1s_A Hyaluronate lyase; the structure consists of three distinct
structural domains: two beta domains at two terminals
and one alpha domain in the middle of the sequence.;
2.10A {Streptococcus agalactiae} (A:316-446)
Length = 131
Score = 26.3 bits (58), Expect = 3.1
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 3/64 (4%)
Query: 120 ADRPDHRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVI 179
H F L++ S EE K +K + + + + I
Sbjct: 62 EAASSHAAAVEVLRGFL---RLANMSNEERNLDLKSTIKTIITSNKFYNVFNNLKSYSDI 118
Query: 180 QAYK 183
Sbjct: 119 ANMN 122
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} (A:)
Length = 345
Score = 25.9 bits (56), Expect = 3.7
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 3/29 (10%)
Query: 163 DANGGDRGSEERFQAVIQAYKILKKSGFC 191
DA GGD + + K ++
Sbjct: 8 DAXGGDHAPKAV---IDGVIKGIEAFDDL 33
>1u7n_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, enterococcus faecalis V583, PSI, protein
structure initiative; HET: MSE; 2.26A {Enterococcus
faecalis} (A:1-119,A:283-336)
Length = 173
Score = 25.8 bits (57), Expect = 3.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 163 DANGGDRGSEERFQAVIQAYK 183
DA GGD + + V A +
Sbjct: 9 DAXGGDNAPQAIVEGVXLAKQ 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics,
acyl-protein synthetase, PSI-2, protein structure
initiative; 2.30A {Staphylococcus aureus subsp}
(A:1-184)
Length = 184
Score = 25.5 bits (54), Expect = 4.6
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 99 AERYPSNSSF-FQDHRSSYGHFADRPDHRVGSMQFNAFEILGLLSDSSPE 147
A++ + + +Y + ++ +GL D+S +
Sbjct: 11 AQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQ 60
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH;
1.45A {Escherichia coli} (A:)
Length = 286
Score = 25.3 bits (55), Expect = 5.2
Identities = 13/76 (17%), Positives = 18/76 (23%), Gaps = 7/76 (9%)
Query: 87 TGERFTWTAHLYAERYPSNSSFFQDHRSSYGHFADRPDHRVGSMQFNAFEILGLLSDSSP 146
E Y+ Y + DH S + V S + S
Sbjct: 58 ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDG-------SHFPF 110
Query: 147 EEIRGRYKDLVKKHHP 162
E K +V H
Sbjct: 111 AENVKLVKSVVDFCHS 126
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} (Z:366-438,Z:554-584)
Length = 104
Score = 25.2 bits (55), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 81 YQKEGVTGERFTWTAHLYAERYPSNSSFFQD 111
G T ERFT+ AH RYP + Q+
Sbjct: 23 TTTTGETPERFTYIAHQDTGRYP-EGDWIQN 52
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
binding, STAM2, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:88-163)
Length = 76
Score = 24.8 bits (54), Expect = 7.8
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 136 EILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190
E+ ++ + + ++ + K L+ + + D +F + K +K+ G
Sbjct: 12 EVRAVIKNKAHPKVCEKLKSLMVEWS-EEFQKD----PQFSLISATIKSMKEEGI 61
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium
formate dehydrogenase, selenocysteine, molybdopterin,
MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A
{Desulfovibrio gigas} (A:58-130,A:493-574)
Length = 155
Score = 24.9 bits (54), Expect = 7.8
Identities = 3/27 (11%), Positives = 6/27 (22%)
Query: 147 EEIRGRYKDLVKKHHPDANGGDRGSEE 173
+ I R + N +
Sbjct: 36 DTIAERVAKTREATFVTKNAKGQVVNR 62
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase
substrate; VHS, FYVE, zinc finger, superhelix; HET: CIT;
2.00A {Drosophila melanogaster} (A:84-156)
Length = 73
Score = 24.7 bits (54), Expect = 8.4
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 136 EILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSGF 190
L + E +R + +LV+ S +++QA+ ILK G
Sbjct: 6 MFSSFLESTPHENVRQKMLELVQTWAYAF-----RSSDKYQAIKDTMTILKAKGH 55
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand,
copper, melanin biosynthesis, metal-binding,
monooxygenase, oxidoreductase, secreted; 1.97A {Manduca
sexta} (A:153-197,A:428-694)
Length = 312
Score = 24.4 bits (53), Expect = 9.9
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 12/96 (12%)
Query: 49 EEQFFLF-CLDH-VKKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHLYAERYPSNS 106
+Q +F +D V + G N S + +T L +
Sbjct: 142 SDQRKMFIEMDRFVVPLSAGENTITRQSTESS-------LTIPFEQTFRDLSIQGSDPRR 194
Query: 107 SFFQDHRSSYGHFADR---PDHRVGSMQFNAFEILG 139
S + P VG + + F +L
Sbjct: 195 SELAAFNYCGCGWPQHMLVPKGTVGGVAYQLFVMLS 230
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,597,897
Number of extensions: 74641
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 39
Length of query: 191
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 107
Effective length of database: 2,116,429
Effective search space: 226457903
Effective search space used: 226457903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)