RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ
family protein [Candidatus Liberibacter asiaticus str. psy62]
(191 letters)
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 59.4 bits (144), Expect = 5e-10
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186
GS+ ++ E + + L K HPD N + + E F+ + L+
Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71
Query: 187 K 187
K
Sbjct: 72 K 72
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein structure initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 55.8 bits (134), Expect = 5e-09
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 125 HRVGSMQF-NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183
+ +M+ + + ILG+ + I+ Y+ L +K+HPD + + +E +F+ + +A++
Sbjct: 20 FQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWE 78
Query: 184 ILKKS 188
+LK
Sbjct: 79 VLKDE 83
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding, cytoplasm,
nucleotide-binding, nucleus, phosphorylation; HET: ADP;
1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B*
1nz6_A
Length = 92
Score = 56.0 bits (135), Expect = 5e-09
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 125 HRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQA 181
H V ++ +G+ +PE+++ Y+ V HP G + ++ F + A
Sbjct: 26 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDA 85
Query: 182 YKILKK 187
+ +
Sbjct: 86 WSEFEN 91
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like
J-domain containing protein, JAC1, chloroplast
accumulation response; 1.80A {Arabidopsis thaliana}
Length = 106
Score = 55.7 bits (134), Expect = 6e-09
Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGS-------EERFQAVIQAYKIL 185
+ ++ + L+ +R Y+ + HPD S E+ F+ + +A+
Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100
Query: 186 KKSG 189
G
Sbjct: 101 NTLG 104
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 53.3 bits (128), Expect = 4e-08
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
M + ++ LGL +S EEI+ Y+ ++HPD + G+EE+F+ + +AY +L
Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLS 56
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 53.1 bits (127), Expect = 4e-08
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQAYKILK 186
++ +G+ +PE+++ Y+ V HPD G + ++ F + A+ +
Sbjct: 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 47.6 bits (113), Expect = 2e-06
Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSD--SSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
E+L L ++ YK HPD GS Q + + K
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG----GSHALMQELNSLWGTFK 63
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, PSI-2, protein
structure initiative; 1.86A {Caenorhabditis elegans}
Length = 73
Score = 46.8 bits (111), Expect = 3e-06
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+++LG+ D+S E++ Y+ + K HPD N E+F+ + QAY++L
Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAYEVLS 59
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 71
Score = 46.8 bits (111), Expect = 3e-06
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 133 NAFEILGLLSDSS-PEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSG 189
A +IL L ++ ++++ ++ ++ +HPD GS + +A L+K G
Sbjct: 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFLEKRG 68
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulator/viral protein complex; 3.10A {Simian virus 40}
PDB: 2pkg_C
Length = 174
Score = 44.6 bits (105), Expect = 2e-05
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSDSSP--EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++LGL + +R Y K+ HPD G + E+ + + YK ++
Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 63
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 44.0 bits (103), Expect = 2e-05
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 133 NAFEILGLLSDSS--PEEIRGRYKDLVKKHHPDANGG-----DRGSEERFQAVIQAYKIL 185
+ F + GL + + + R++DL +++HPD + ++ + QA++ L
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 186 KK 187
+
Sbjct: 62 RH 63
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 42.9 bits (100), Expect = 4e-05
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQAYKIL 185
N FE+ GL + + +++ L K+ HPD + ++ + AY+ L
Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64
Query: 186 K 186
K
Sbjct: 65 K 65
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 42.4 bits (99), Expect = 6e-05
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER------FQAVIQAY 182
+++ + + ILG ++ +++ +Y+ L+ +HPD D + F + QA+
Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72
Query: 183 KILK 186
KIL
Sbjct: 73 KILG 76
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 41.6 bits (97), Expect = 1e-04
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ +EILG+ + EIR YK L K+HPD N GD+ +E +F+ + +AY++L
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular
chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 40.4 bits (94), Expect = 2e-04
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ ++ F+ + +LG+ +S +I+ YK L ++ HPD D G+E+RF + +AY+IL
Sbjct: 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEILS 70
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 40.4 bits (94), Expect = 2e-04
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 133 NAFEILGLLSDSSPE--EIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++LGL + +R Y K+ HPD G + E+ + + YK ++
Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 60
>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural
genomics medical relevance, protein structure
initiative, PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 39.8 bits (92), Expect = 3e-04
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER-----FQAVIQAYKIL 185
+ F ++ +++ RY+ L + HPD +E+ V AYK L
Sbjct: 44 DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103
Query: 186 K 186
Sbjct: 104 L 104
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16;
DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A
{Saccharomyces cerevisiae}
Length = 65
Score = 39.9 bits (93), Expect = 4e-04
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 134 AFEILGLLSDS---SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187
+ +IL + + ++I R+ L + + + GS V +A + LK
Sbjct: 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKW 58
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 39.3 bits (91), Expect = 6e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+++LG+ S ++ +I+ Y +HPD N G + ERF + QAY +L
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 37.8 bits (87), Expect = 0.002
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186
+ +E+L + +S E I+ Y+ L K HPD N ++ +E RF+ V +AY++L
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLS 64
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 37.8 bits (87), Expect = 0.002
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ ++ILG+ ++S +EI+ Y L KK+HPD N D ++E+F + +AY++L
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 112
Score = 36.3 bits (83), Expect = 0.005
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ + +LG SS E+I +K + HPD + + + E FQ + +A +IL
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 34.7 bits (79), Expect = 0.013
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ + +LGL +++ ++I+ Y+ L K+HPD N + + ++F+ + A+ IL
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILT 71
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural
genomics, PSI-2, protein structure initiative; 1.25A
{Saccharomyces cerevisiae}
Length = 92
Score = 34.7 bits (79), Expect = 0.014
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+++LG+ ++ +E++ Y+ K+HPD GD E+F+ + +A++IL
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILN 59
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix
motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 33.2 bits (75), Expect = 0.035
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186
N +E+LG+ + +SPE+I+ Y+ L + HPD N ++ +E++F+ V +AY++L
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLS 64
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 78
Score = 32.8 bits (74), Expect = 0.045
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
+ +EILG+ +S E+++ Y+ L K HPD N G+ E F+A+ AY +L
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLS 60
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, protein structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 31.2 bits (70), Expect = 0.17
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 133 NAFEILGL-LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEE---RFQAVIQAYKILK 186
N +++L + + +++ Y+ L +KHHPD RF+ + AY+ LK
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 29.8 bits (66), Expect = 0.40
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188
+++++LG+ +S +E+ Y+ L HPD GSE+ F+AV+ A L K+
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-GSEDAFKAVVNARTALLKN 82
>1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type
lectin, metal- binding, loop exchanged dimer, toxin;
1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B
1u0n_B 1u0o_A
Length = 133
Score = 29.5 bits (65), Expect = 0.51
Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 33 NCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSD-DEVGRYQKEGVTGERF 91
+ Q G + + ++E+ F+ L + ++GL ++ + E G
Sbjct: 31 SEQAKGGHLVSIKIYSKEKDFVGDLVTKNIQSSDLYAWIGLRVENKEKQCSSEWSDGSSV 90
Query: 92 TWTAHLYAERYPSNSSFFQDHRSSYGHFADRP 123
++ ER F + + + +
Sbjct: 91 SYEN--VVERTVKK-CFALEKDLGFVLWINLY 119
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 29.3 bits (65), Expect = 0.54
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186
++ILG+ +S +I+ + L K+HPD N +E +F+ + +AY+ L
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLS 60
>3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure
initiative, N SGX research center for structural
genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens}
Length = 608
Score = 28.6 bits (63), Expect = 0.91
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 134 AFEILGLLSDSSPEEIRGRYKDLVKK 159
+ GL+SD+ EE+ ++DL +
Sbjct: 522 PLPLSGLVSDAPLEEVARAFEDLREA 547
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 28.4 bits (63), Expect = 1.1
Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 89/186 (47%)
Query: 45 GSGAEEQFF-----LFCLDHVKKYNKGYNYFLG------------LS--DDEVGRYQKEG 85
G G + +F L+ Y+ +G L + + +G
Sbjct: 162 GQGNTDDYFEELRDLYQT---------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 86 --VTGERFTWTAHLYAERYPSNS-------SF-----FQDHRSSYGHFADRPDHRVGSMQ 131
+ W + P S Q H+ V
Sbjct: 213 LNIL----EWLEN--PSNTPDKDYLLSIPISCPLIGVIQ-----LAHYV------V---- 251
Query: 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-----------SEERF-QAVI 179
++LG +P E+R K A G +G S E F +V
Sbjct: 252 --TAKLLGF----TPGELRSYLK--------GATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 180 QAYKIL 185
+A +L
Sbjct: 298 KAITVL 303
Score = 26.4 bits (58), Expect = 3.6
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 90 RFTW---TA-HLYAERYPSNSSFFQDHRSSYGHFA--DRPDHRVG-SMQFNAFEILGLLS 142
TA A + F + FA D P +F LG +S
Sbjct: 17 EHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKF-----LGYVS 69
Query: 143 DSSPEEIRGRYKDLVK 158
G++ ++
Sbjct: 70 SLVEPSKVGQFDQVLN 85
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL
capsid, single-stranded DNA, icosahedral virus; HET:
DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB:
1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A
1c8e_A 1c8f_A 1c8g_A
Length = 584
Score = 26.8 bits (59), Expect = 3.2
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 38 GEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHL 97
G ++ P+ +G D + + Y G + G T ERFT+ AH
Sbjct: 351 GPFKTPIAAGRGGAQ----TDENQAADGNPRYAFGRQHGQKTTTT--GETPERFTYIAHQ 404
Query: 98 YAERYPSNSSFFQDHR 113
RYP +
Sbjct: 405 DTGRYPEGDWIQNINF 420
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 26.2 bits (57), Expect = 4.3
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 139 GLLSDSSPEEIRGRYKDLVKKHH------PDANGGDRGSEERFQAVIQAYKILKKSGF 190
S EE +L+KK+ + EER + +A KIL++ F
Sbjct: 409 LFNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDF 466
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 26.2 bits (58), Expect = 4.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 110 QDHRSSYGHFADRPDHRVGSMQFNA---FEILGLLSDSSPEEIRGRYKDLVKK 159
QD + F P+ V F A EIL L S E+ GR DL+ +
Sbjct: 1120 QDDKL-RQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGR-TDLLHQ 1170
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A*
1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A*
1c9c_A* 1cq6_A* 1cq7_A* ...
Length = 396
Score = 25.7 bits (55), Expect = 7.7
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 33 NCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKE 84
Q I R + +E+ + K G F GL+ ++V R ++E
Sbjct: 314 MRQRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSFSGLTKEQVLRLREE 364
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural
genomics, unknown function; HET: MSE; 2.95A {Bacillus
subtilis} SCOP: c.77.1.4
Length = 345
Score = 25.4 bits (55), Expect = 8.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 163 DANGGDRGSEERFQAVIQAYKILK 186
DA GGD + VI+ +
Sbjct: 8 DAMGGDHAPKAVIDGVIKGIEAFD 31
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (54), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 12/45 (26%)
Query: 126 RVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHP---DANGG 167
R S + AF +LGLL +PE + +L +K P D NGG
Sbjct: 695 RTFSQKEMAFNLLGLL---TPEVV-----ELCQK-SPVMADLNGG 730
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA
binding domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
a.4.1.3
Length = 95
Score = 25.2 bits (55), Expect = 9.8
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 141 LSDSSPEEIRGRYKDLVKKHHPDANGG 167
L + +P E+ R+++L++ H G
Sbjct: 65 LGNKTPVEVSHRFRELMQLFHTACESG 91
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,790,208
Number of extensions: 84483
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 46
Length of query: 191
Length of database: 5,693,230
Length adjustment: 87
Effective length of query: 104
Effective length of database: 3,584,002
Effective search space: 372736208
Effective search space used: 372736208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)