RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780585|ref|YP_003064998.1| molecular chaperone DnaJ family protein [Candidatus Liberibacter asiaticus str. psy62] (191 letters) >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 Score = 59.4 bits (144), Expect = 5e-10 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 128 GSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186 GS+ ++ E + + L K HPD N + + E F+ + L+ Sbjct: 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE 71 Query: 187 K 187 K Sbjct: 72 K 72 >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Score = 55.8 bits (134), Expect = 5e-09 Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 2/65 (3%) Query: 125 HRVGSMQF-NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYK 183 + +M+ + + ILG+ + I+ Y+ L +K+HPD + + +E +F+ + +A++ Sbjct: 20 FQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWE 78 Query: 184 ILKKS 188 +LK Sbjct: 79 VLKDE 83 >2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphorylation; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Score = 56.0 bits (135), Expect = 5e-09 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 125 HRVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQA 181 H V ++ +G+ +PE+++ Y+ V HP G + ++ F + A Sbjct: 26 HTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDA 85 Query: 182 YKILKK 187 + + Sbjct: 86 WSEFEN 91 >3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Score = 55.7 bits (134), Expect = 6e-09 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGS-------EERFQAVIQAYKIL 185 + ++ + L+ +R Y+ + HPD S E+ F+ + +A+ Sbjct: 41 SGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHF 100 Query: 186 KKSG 189 G Sbjct: 101 NTLG 104 >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 Score = 53.3 bits (128), Expect = 4e-08 Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 130 MQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 M + ++ LGL +S EEI+ Y+ ++HPD + G+EE+F+ + +AY +L Sbjct: 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPD-KNKEPGAEEKFKEIAEAYDVLS 56 >1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Score = 53.1 bits (127), Expect = 4e-08 Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Query: 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD---RGSEERFQAVIQAYKILK 186 ++ +G+ +PE+++ Y+ V HPD G + ++ F + A+ + Sbjct: 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFE 174 >1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79 Score = 47.6 bits (113), Expect = 2e-06 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 6/56 (10%) Query: 133 NAFEILGLLSD--SSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 E+L L ++ YK HPD GS Q + + K Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG----GSHALMQELNSLWGTFK 63 >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, PSI-2, protein structure initiative; 1.86A {Caenorhabditis elegans} Length = 73 Score = 46.8 bits (111), Expect = 3e-06 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +++LG+ D+S E++ Y+ + K HPD N E+F+ + QAY++L Sbjct: 9 GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGA---EQFKQISQAYEVLS 59 >2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71 Score = 46.8 bits (111), Expect = 3e-06 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 5/58 (8%) Query: 133 NAFEILGLLSDSS-PEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKSG 189 A +IL L ++ ++++ ++ ++ +HPD GS + +A L+K G Sbjct: 15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFLEKRG 68 >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulator/viral protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 Score = 44.6 bits (105), Expect = 2e-05 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 133 NAFEILGLLSDSSP--EEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 ++LGL + +R Y K+ HPD G + E+ + + YK ++ Sbjct: 12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 63 >1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171 Score = 44.0 bits (103), Expect = 2e-05 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 133 NAFEILGLLSDSS--PEEIRGRYKDLVKKHHPDANGG-----DRGSEERFQAVIQAYKIL 185 + F + GL + + + R++DL +++HPD + ++ + QA++ L Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61 Query: 186 KK 187 + Sbjct: 62 RH 63 >3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae} Length = 174 Score = 42.9 bits (100), Expect = 4e-05 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSE-----ERFQAVIQAYKIL 185 N FE+ GL + + +++ L K+ HPD + ++ + AY+ L Sbjct: 5 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTL 64 Query: 186 K 186 K Sbjct: 65 K 65 >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 Score = 42.4 bits (99), Expect = 6e-05 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query: 129 SMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER------FQAVIQAY 182 +++ + + ILG ++ +++ +Y+ L+ +HPD D + F + QA+ Sbjct: 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAW 72 Query: 183 KILK 186 KIL Sbjct: 73 KILG 76 >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 Score = 41.6 bits (97), Expect = 1e-04 Identities = 22/54 (40%), Positives = 35/54 (64%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + +EILG+ + EIR YK L K+HPD N GD+ +E +F+ + +AY++L Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLT 57 >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 Score = 40.4 bits (94), Expect = 2e-04 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + ++ F+ + +LG+ +S +I+ YK L ++ HPD D G+E+RF + +AY+IL Sbjct: 12 LSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPD-KNKDPGAEDRFIQISKAYEILS 70 >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 Score = 40.4 bits (94), Expect = 2e-04 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 133 NAFEILGLLSDSSPE--EIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 ++LGL + +R Y K+ HPD G + E+ + + YK ++ Sbjct: 9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDE----EKMKKMNTLYKKME 60 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207 Score = 39.8 bits (92), Expect = 3e-04 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 7/61 (11%) Query: 133 NAFEILGL--LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEER-----FQAVIQAYKIL 185 + F ++ +++ RY+ L + HPD +E+ V AYK L Sbjct: 44 DYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTL 103 Query: 186 K 186 Sbjct: 104 L 104 >2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 65 Score = 39.9 bits (93), Expect = 4e-04 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 134 AFEILGLLSDS---SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKK 187 + +IL + + ++I R+ L + + + GS V +A + LK Sbjct: 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKW 58 >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Score = 39.3 bits (91), Expect = 6e-04 Identities = 17/54 (31%), Positives = 29/54 (53%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +++LG+ S ++ +I+ Y +HPD N G + ERF + QAY +L Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLG 71 >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 Score = 37.8 bits (87), Expect = 0.002 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186 + +E+L + +S E I+ Y+ L K HPD N ++ +E RF+ V +AY++L Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLS 64 >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 Score = 37.8 bits (87), Expect = 0.002 Identities = 20/54 (37%), Positives = 36/54 (66%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + ++ILG+ ++S +EI+ Y L KK+HPD N D ++E+F + +AY++L Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61 >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 Score = 36.3 bits (83), Expect = 0.005 Identities = 16/54 (29%), Positives = 28/54 (51%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + + +LG SS E+I +K + HPD + + + E FQ + +A +IL Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILT 74 >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 Score = 34.7 bits (79), Expect = 0.013 Identities = 15/54 (27%), Positives = 33/54 (61%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + + +LGL +++ ++I+ Y+ L K+HPD N + + ++F+ + A+ IL Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILT 71 >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 Score = 34.7 bits (79), Expect = 0.014 Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 3/52 (5%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 +++LG+ ++ +E++ Y+ K+HPD GD E+F+ + +A++IL Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDT---EKFKEISEAFEILN 59 >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 Score = 33.2 bits (75), Expect = 0.035 Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 1/55 (1%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDR-GSEERFQAVIQAYKILK 186 N +E+LG+ + +SPE+I+ Y+ L + HPD N ++ +E++F+ V +AY++L Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLS 64 >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 Score = 32.8 bits (74), Expect = 0.045 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 + +EILG+ +S E+++ Y+ L K HPD N G+ E F+A+ AY +L Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAP-GATEAFKAIGTAYAVLS 60 >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, protein structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 Score = 31.2 bits (70), Expect = 0.17 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Query: 133 NAFEILGL-LSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEE---RFQAVIQAYKILK 186 N +++L + + +++ Y+ L +KHHPD RF+ + AY+ LK Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLK 73 >2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90 Score = 29.8 bits (66), Expect = 0.40 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 133 NAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 +++++LG+ +S +E+ Y+ L HPD GSE+ F+AV+ A L K+ Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP-GSEDAFKAVVNARTALLKN 82 >1fvu_A Botrocetin alpha chain; VON WILLBRAND factor modulator, C-type lectin, metal- binding, loop exchanged dimer, toxin; 1.80A {Bothrops jararaca} SCOP: d.169.1.1 PDB: 1ijk_B 1u0n_B 1u0o_A Length = 133 Score = 29.5 bits (65), Expect = 0.51 Identities = 12/92 (13%), Positives = 31/92 (33%), Gaps = 4/92 (4%) Query: 33 NCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSD-DEVGRYQKEGVTGERF 91 + Q G + + ++E+ F+ L + ++GL ++ + E G Sbjct: 31 SEQAKGGHLVSIKIYSKEKDFVGDLVTKNIQSSDLYAWIGLRVENKEKQCSSEWSDGSSV 90 Query: 92 TWTAHLYAERYPSNSSFFQDHRSSYGHFADRP 123 ++ ER F + + + + Sbjct: 91 SYEN--VVERTVKK-CFALEKDLGFVLWINLY 119 >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 Score = 29.3 bits (65), Expect = 0.54 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Query: 135 FEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILK 186 ++ILG+ +S +I+ + L K+HPD N +E +F+ + +AY+ L Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP-DAEAKFREIAEAYETLS 60 >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} Length = 608 Score = 28.6 bits (63), Expect = 0.91 Identities = 8/26 (30%), Positives = 15/26 (57%) Query: 134 AFEILGLLSDSSPEEIRGRYKDLVKK 159 + GL+SD+ EE+ ++DL + Sbjct: 522 PLPLSGLVSDAPLEEVARAFEDLREA 547 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 28.4 bits (63), Expect = 1.1 Identities = 29/186 (15%), Positives = 48/186 (25%), Gaps = 89/186 (47%) Query: 45 GSGAEEQFF-----LFCLDHVKKYNKGYNYFLG------------LS--DDEVGRYQKEG 85 G G + +F L+ Y+ +G L + + +G Sbjct: 162 GQGNTDDYFEELRDLYQT---------YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212 Query: 86 --VTGERFTWTAHLYAERYPSNS-------SF-----FQDHRSSYGHFADRPDHRVGSMQ 131 + W + P S Q H+ V Sbjct: 213 LNIL----EWLEN--PSNTPDKDYLLSIPISCPLIGVIQ-----LAHYV------V---- 251 Query: 132 FNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGDRG-----------SEERF-QAVI 179 ++LG +P E+R K A G +G S E F +V Sbjct: 252 --TAKLLGF----TPGELRSYLK--------GATGHSQGLVTAVAIAETDSWESFFVSVR 297 Query: 180 QAYKIL 185 +A +L Sbjct: 298 KAITVL 303 Score = 26.4 bits (58), Expect = 3.6 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 14/76 (18%) Query: 90 RFTW---TA-HLYAERYPSNSSFFQDHRSSYGHFA--DRPDHRVG-SMQFNAFEILGLLS 142 TA A + F + FA D P +F LG +S Sbjct: 17 EHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPAELVGKF-----LGYVS 69 Query: 143 DSSPEEIRGRYKDLVK 158 G++ ++ Sbjct: 70 SLVEPSKVGQFDQVLN 85 >4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A Length = 584 Score = 26.8 bits (59), Expect = 3.2 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 6/76 (7%) Query: 38 GEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKEGVTGERFTWTAHL 97 G ++ P+ +G D + + Y G + G T ERFT+ AH Sbjct: 351 GPFKTPIAAGRGGAQ----TDENQAADGNPRYAFGRQHGQKTTTT--GETPERFTYIAHQ 404 Query: 98 YAERYPSNSSFFQDHR 113 RYP + Sbjct: 405 DTGRYPEGDWIQNINF 420 >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566 Score = 26.2 bits (57), Expect = 4.3 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 139 GLLSDSSPEEIRGRYKDLVKKHH------PDANGGDRGSEERFQAVIQAYKILKKSGF 190 S EE +L+KK+ + EER + +A KIL++ F Sbjct: 409 LFNSAKVDEEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDF 466 >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Length = 1479 Score = 26.2 bits (58), Expect = 4.7 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 5/53 (9%) Query: 110 QDHRSSYGHFADRPDHRVGSMQFNA---FEILGLLSDSSPEEIRGRYKDLVKK 159 QD + F P+ V F A EIL L S E+ GR DL+ + Sbjct: 1120 QDDKL-RQKFVGTPEKVVNLFTFLAEEVREILAGLGFRSLNEVIGR-TDLLHQ 1170 >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 1ars_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* 1cq7_A* ... Length = 396 Score = 25.7 bits (55), Expect = 7.7 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 33 NCQCIGEYRAPVGSGAEEQFFLFCLDHVKKYNKGYNYFLGLSDDEVGRYQKE 84 Q I R + +E+ + K G F GL+ ++V R ++E Sbjct: 314 MRQRIQRMRQLFVNTLQEKGANRDFSFIIK-QNGMFSFSGLTKEQVLRLREE 364 >1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4 Length = 345 Score = 25.4 bits (55), Expect = 8.6 Identities = 7/24 (29%), Positives = 10/24 (41%) Query: 163 DANGGDRGSEERFQAVIQAYKILK 186 DA GGD + VI+ + Sbjct: 8 DAMGGDHAPKAVIDGVIKGIEAFD 31 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 25.2 bits (54), Expect = 9.0 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 12/45 (26%) Query: 126 RVGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHP---DANGG 167 R S + AF +LGLL +PE + +L +K P D NGG Sbjct: 695 RTFSQKEMAFNLLGLL---TPEVV-----ELCQK-SPVMADLNGG 730 >1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Length = 95 Score = 25.2 bits (55), Expect = 9.8 Identities = 7/27 (25%), Positives = 15/27 (55%) Query: 141 LSDSSPEEIRGRYKDLVKKHHPDANGG 167 L + +P E+ R+++L++ H G Sbjct: 65 LGNKTPVEVSHRFRELMQLFHTACESG 91 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.137 0.427 Gapped Lambda K H 0.267 0.0577 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,790,208 Number of extensions: 84483 Number of successful extensions: 280 Number of sequences better than 10.0: 1 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 46 Length of query: 191 Length of database: 5,693,230 Length adjustment: 87 Effective length of query: 104 Effective length of database: 3,584,002 Effective search space: 372736208 Effective search space used: 372736208 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.9 bits)