HHsearch alignment for GI: 254780586 and conserved domain: COG5007
>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription].
Probab=99.86 E-value=1.8e-21 Score=136.78 Aligned_cols=76 Identities=28% Similarity=0.447 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCC-CEEEEE
Q ss_conf 9999999984199517999950656888777778998508999998203479988899999999999983378-228777
Q gi|254780586|r 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRKIYDLLHKEIKEE-LHALSI 87 (101)
Q Consensus 9 ~~~I~~kL~~~l~~~~i~V~D~S~~H~gH~~~~~~~~~sHf~i~IvS~~F~g~s~i~rHr~V~~~L~~e~~~~-iHAlsi 87 (101)
T Consensus 3 ~e~Ik~ll~~~L~~e~v~V~Gd---------------g~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~~~~IHAlsi 67 (80)
T COG5007 3 NEEIKSLLENALPLEEVEVEGD---------------GSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIADNEIHALSI 67 (80)
T ss_pred HHHHHHHHHHCCCCCEEEEECC---------------CCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 7999999982288527899627---------------7248998864866672377878888998998851285278886
Q ss_pred ECCCHHHHHHHH
Q ss_conf 607689999853
Q gi|254780586|r 88 EAFSPDEKHTLK 99 (101)
Q Consensus 88 k~~tp~E~~~~k 99 (101)
T Consensus 68 kt~Tp~eW~~~~ 79 (80)
T COG5007 68 KTYTPAEWARDR 79 (80)
T ss_pred EECCHHHHHHCC
T ss_conf 515888961402