RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780586|ref|YP_003064999.1| BolA family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional.
          Length = 105

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 11/92 (11%)

Query: 12  ITEKIRIALSPDDLQVINESHLH---VGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHR 68
           I EK+R A  P  L+V++ES+ H    G         E+H ++ +VS  FTG     RHR
Sbjct: 7   IEEKLRAAFQPVFLEVVDESYRHNVPAG--------SESHFKVVLVSDRFTGERFLNRHR 58

Query: 69  KIYDLLHKEIKEELHALSIEAFSPDEKHTLKN 100
            IY  L +E+   +HAL++  ++  E   L++
Sbjct: 59  MIYSTLAEELSTTVHALALHTYTIKEWEGLQD 90


>gnl|CDD|180202 PRK05687, fliH, flagellar assembly protein H; Validated.
          Length = 246

 Score = 26.4 bits (59), Expect = 1.9
 Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 15  KIRIALSPDDLQVINESHLH 34
           K ++ ++PDDL+++ E  L 
Sbjct: 177 KPQLRVNPDDLELV-EQLLG 195


>gnl|CDD|162830 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
           predominant form.  Bacteria have a single DNA-directed
           RNA polymerase, with required subunits that include
           alpha, beta, and beta-prime. This model describes the
           predominant architecture of the beta-prime subunit in
           most bacteria. This model excludes from among the
           bacterial mostly sequences from the cyanobacteria, where
           RpoC is replaced by two tandem genes homologous to it
           but also encoding an additional domain.
          Length = 1140

 Score = 25.0 bits (55), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 9/33 (27%)

Query: 69  KIYDLLHKEIKEE---------LHALSIEAFSP 92
           +++D+L   IKE          LH L I+AF P
Sbjct: 389 EVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEP 421


>gnl|CDD|132590 TIGR03551, F420_cofH, 7,8-didemethyl-8-hydroxy-5-deazariboflavin
           synthase, CofH subunit.  This enzyme, together with
           CofG, complete the biosynthesis of
           7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the
           chromophore of coenzyme F420. The chromophore is also
           used in cyanobacteria DNA photolyases.
          Length = 343

 Score = 24.2 bits (53), Expect = 7.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 76  KEIKEELHALSIEAFSPDE 94
           + +KEE+  + I AFSP E
Sbjct: 110 RAVKEEVPGMHIHAFSPME 128


>gnl|CDD|184837 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
          pyrophosphatase; Provisional.
          Length = 201

 Score = 24.3 bits (53), Expect = 7.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 76 KEIKEELHALSIEAFSPDEK 95
          +EIK  L  L IE  SPD+K
Sbjct: 14 REIKRLLSDLGIEVLSPDKK 33


>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
          Length = 668

 Score = 24.3 bits (54), Expect = 7.6
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 5/26 (19%)

Query: 33  LHVGHQPQFN-----GLGETHIRIKI 53
           L V    +       G+GE H+ + +
Sbjct: 417 LRVERDEETGQTILSGMGELHLDVAL 442


>gnl|CDD|129254 TIGR00150, HI0065_YjeE, ATPase, YjeE family.  Members of this
          family have a conserved nucleotide-binding motif
          GXXGXGKT and a nucleotide-binding fold. Member protein
          YjeE of Haemophilus influenzae (HI0065) was shown to
          have ATPase activity.
          Length = 133

 Score = 23.9 bits (52), Expect = 8.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 43 GLGETHIRIKIVSPTFTGISK-TFRHRKIY--DLLHKEIKEELHALSIE 88
          GLG   I+  + SPTFT +++    +  +Y  DL      EEL  + +E
Sbjct: 45 GLG---IQGNVTSPTFTLVNEYNEGNLMVYHFDLYRLADPEELELMGLE 90


>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
           domain fusion protein; Provisional.
          Length = 1460

 Score = 24.1 bits (52), Expect = 9.0
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 9/32 (28%)

Query: 70  IYDLLHKEIKEE---------LHALSIEAFSP 92
           ++D+L + I++          LH L I+AF P
Sbjct: 486 VWDVLEEVIQDHPVLLNRAPTLHRLGIQAFEP 517


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0771    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,676,098
Number of extensions: 95679
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 22
Length of query: 101
Length of database: 5,994,473
Length adjustment: 68
Effective length of query: 33
Effective length of database: 4,525,129
Effective search space: 149329257
Effective search space used: 149329257
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.0 bits)