RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780586|ref|YP_003064999.1| BolA family protein [Candidatus Liberibacter asiaticus str. psy62] (101 letters) >1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123 Score = 90.3 bits (224), Expect = 1e-19 Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 I K+ ALSP+ L++ NES H ETH R+ +VS F G+S RHR Sbjct: 29 AAIRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRL 83 Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94 +++ L +E+ +HAL+I+A +P + Sbjct: 84 VHEALSEELAGPVHALAIQAKTPAQ 108 >2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural genomics, NPPSFA; NMR {Escherichia coli str} Length = 107 Score = 84.5 bits (209), Expect = 5e-18 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 RI EK+R A P L+V++ES+ H E+H ++ +VS FTG RHR Sbjct: 12 ERIEEKLRAAFQPVFLEVVDESYRHNVP-----AGSESHFKVVLVSDRFTGERFLNRHRM 66 Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94 IY L +E+ +HAL++ ++ E Sbjct: 67 IYSTLAEELSTTVHALALHTYTIKE 91 >2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108 Score = 79.5 bits (196), Expect = 2e-16 Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 12/96 (12%) Query: 5 HTSLINRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKT 64 H + I +K+ AL P L+++++S T IVS F Sbjct: 22 HMCIQKVIEDKLSSALKPTFLELVDKSCGC-----------GTSFDAVIVSNNFEDKKLL 70 Query: 65 FRHRKIYDLLHKEIKEELHALSIEAFSPDEKHTLKN 100 RHR + +L +E++ +HA S++ +P E LK+ Sbjct: 71 DRHRLVNTILKEELQ-NIHAFSMKCHTPLEYDKLKS 105 >3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105 Score = 78.0 bits (192), Expect = 4e-16 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 12/85 (14%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 + + E++R LSP L+V + S IVS F G R R Sbjct: 26 SIVEERLRSMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLDRQRL 74 Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94 + + E+ ++HA +++ +P E Sbjct: 75 VNSAIAAEMP-QIHAFTMKCLTPGE 98 >1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113 Score = 74.9 bits (184), Expect = 4e-15 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 + + EK+R L + ++V + + T R+ +VS F G RHR Sbjct: 33 DYLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRL 82 Query: 70 IYDLLHKEIKEELHALSIEAFSPDE 94 + + L +E+ +HA + +P++ Sbjct: 83 VNECLAEELP-HIHAFEQKTLTPEQ 106 >1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80 Score = 69.7 bits (171), Expect = 1e-13 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 14/86 (16%) Query: 9 INRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHR 68 I + I L + V E H +VSP F G + RHR Sbjct: 8 AETIRKLIESGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLARHR 53 Query: 69 KIYDLLHKEIKEELHALSIEAFSPDE 94 +Y L + + +HAL ++ +PDE Sbjct: 54 MVYATLGELMGGAIHALQLKTLTPDE 79 >1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97 Score = 62.9 bits (153), Expect = 2e-11 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 16/86 (18%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 N I + ALS ++ V +H ++ V F G+S+ + + Sbjct: 9 NEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQT 53 Query: 70 IYDLLHKEIKE-ELHALSIEAFSPDE 94 +Y L + I + +HA+SI+A++P E Sbjct: 54 VYGPLMEYIADNRIHAVSIKAYTPAE 79 >2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76 Score = 52.8 bits (127), Expect = 2e-08 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 15/80 (18%) Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69 +++ IR A ++ V + H IK++S F G SK +HR Sbjct: 9 SQLELLIRNAFPEAEITVTSLVG------------DNNHYSIKVISSQFQGKSKLEQHRM 56 Query: 70 IYDLLHKEIKEELHALSIEA 89 IY +L +HA+ I+ Sbjct: 57 IYKVLD---GLNIHAIQIQT 73 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.9 bits (67), Expect = 0.14 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 31/75 (41%) Query: 5 HTSLINRITEKIR-------IALSPDDLQV-----------------INES------HLH 34 H+ L+ ++ I ++ + D+Q+ I+E L Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487 Query: 35 VGHQPQFNGLGETHI 49 V THI Sbjct: 488 V-KWETTTQFKATHI 501 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} Length = 508 Score = 26.6 bits (58), Expect = 1.5 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 14/83 (16%) Query: 17 RIALSPDDLQV--INESHLHVGHQPQFNGLGETHIRIKIVSPTFTGI---SKTFRHR--- 68 R L D++V ++E+ + Q GLG+ +RIK + P T I S TF R Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQ----GLGDQSMRIKHLLPRNTQIVLFSATFSERVEK 307 Query: 69 --KIYDLLHKEIKEELHALSIEA 89 + + EI+ + LS+E Sbjct: 308 YAERFAPNANEIRLKTEELSVEG 330 >1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A* Length = 251 Score = 24.6 bits (54), Expect = 5.1 Identities = 10/27 (37%), Positives = 18/27 (66%) Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98 D + EIKE++ L + +SP++K+ L Sbjct: 87 DRVPAEIKEKVGNLYYQPYSPEQKNIL 113 >1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1 Length = 48 Score = 24.7 bits (53), Expect = 5.7 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 78 IKEELHALSIEAFSPDEKHTLKN 100 +K EL AL E FSP+E L++ Sbjct: 5 LKSELQALKKEGFSPEELAALES 27 >1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C* Length = 289 Score = 24.3 bits (53), Expect = 7.5 Identities = 4/27 (14%), Positives = 15/27 (55%) Query: 72 DLLHKEIKEELHALSIEAFSPDEKHTL 98 + + +E+K+E+ + + + + + L Sbjct: 88 ERIPEELKKEVGDVYFQPYKEGQDNVL 114 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.137 0.398 Gapped Lambda K H 0.267 0.0541 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 905,082 Number of extensions: 38592 Number of successful extensions: 166 Number of sequences better than 10.0: 1 Number of HSP's gapped: 155 Number of HSP's successfully gapped: 23 Length of query: 101 Length of database: 5,693,230 Length adjustment: 66 Effective length of query: 35 Effective length of database: 4,093,126 Effective search space: 143259410 Effective search space used: 143259410 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.5 bits)