RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780586|ref|YP_003064999.1| BolA family protein
[Candidatus Liberibacter asiaticus str. psy62]
         (101 letters)



>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 113

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 10  NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
           + + EK+R  L  + ++V + +               T  R+ +VS  F G     RHR 
Sbjct: 33  DYLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQRHRL 82

Query: 70  IYDLLHKEIKEELHALSIEAFSPDE 94
           + + L +E+   +HA   +  +P++
Sbjct: 83  VNECLAEELP-HIHAFEQKTLTPEQ 106


>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli
          [TaxId: 562]}
          Length = 97

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 16/86 (18%)

Query: 10 NRITEKIRIALSPDDLQVINESHLHVGHQPQFNGLGETHIRIKIVSPTFTGISKTFRHRK 69
          N I   +  ALS  ++ V                   +H ++  V   F G+S+  + + 
Sbjct: 9  NEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRVKKQQT 53

Query: 70 IYDLLHKEIKE-ELHALSIEAFSPDE 94
          +Y  L + I +  +HA+SI+A++P E
Sbjct: 54 VYGPLMEYIADNRIHAVSIKAYTPAE 79


>d1e2wa1 b.2.6.1 (A:1-168,A:233-251) Cytochrome f, large domain
           {Chlamydomonas reinhardtii [TaxId: 3055]}
          Length = 187

 Score = 23.1 bits (50), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 72  DLLHKEIKEELHALSIEAFSPDEKHTL 98
           D +  EIKE++  L  + +SP++K+ L
Sbjct: 87  DRVPAEIKEKVGNLYYQPYSPEQKNIL 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 394,386
Number of extensions: 17294
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 11
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)