HHsearch alignment for GI: 254780588 and conserved domain: COG1024
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].
Probab=97.79 E-value=0.0031 Score=44.03 Aligned_cols=139 Identities=18% Similarity=0.246 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC-CCCCCCCC----------HHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 776836899999999999971-9948999953532-46778430----------02799999998886237998899996
Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGA-YPGVDAEA----------RGQGEAIARATEMCLKLQVPILSIII 197 (317)
Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa-~~g~~aE~----------~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317)
T Consensus 27 Nal~~~~~~~l~~al~~~~~d~~vr~vvltG~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 106 (257)
T COG1024 27 NALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVN 106 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 58899999999999999962998169999818971671749887742231046888887889999999858999999836
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHH-HHHHHHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC
Q ss_conf 167777542113320002204674012------1554-42244215--6012256-554203884899978996526228
Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPE-GAASILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317)
Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPE-g~AsILwk--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317)
T Consensus 107 G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 186 (257)
T COG1024 107 GYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPD 186 (257)
T ss_pred CHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCC
T ss_conf 50146788998708879834777885541342658784588999997396889999982898889999978991466587
Q ss_pred C
Q ss_conf 8
Q gi|254780588|r 268 P 268 (317)
Q Consensus 268 P 268 (317)
T Consensus 187 ~ 187 (257)
T COG1024 187 A 187 (257)
T ss_pred H
T ss_conf 6