HHsearch alignment for GI: 254780588 and conserved domain: KOG0540

Probab=99.94  E-value=1.7e-25  Score=201.90  Aligned_cols=207  Identities=23%  Similarity=0.314  Sum_probs=171.8

Q ss_pred             HHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             0223-79998622545--06722753347897299998875380089998458775023442026776836899999999
Q gi|254780588|r   68 NRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLM  144 (317)
Q Consensus        68 ~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~  144 (317)
T Consensus       310 ~~~yd~r~vi~~iVD~~~f~E~~--~~y~~--tlvtGfarlnG~tVgIvgnn--------~kf~~G~L~s~sa~KgarfI  377 (536)
T KOG0540         310 TKAYDVREVIARIVDGSRFFEFK--PGYGD--TLVTGFARLNGRTVGIVGNN--------PKFAGGVLFSESAVKGARFI  377 (536)
T ss_pred             CCCCCHHHHHHHHCCCCHHHHHC--CCCCC--CEEEEEEEECCEEEEEECCC--------CHHCCCCCCHHHHHHHHHHH
T ss_conf             45630476777650440454422--24020--21660126778888996047--------20114411114444467899


Q ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEEEECCC
Q ss_conf             999971994899995353246778430027999999988862379988999961677775421133----2000220467
Q gi|254780588|r  145 EMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHA  220 (317)
Q Consensus       145 ~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~m~~~s  220 (317)
T Consensus       378 e~c~q~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~s-yGG~y~m~sr~~~gd~~yawP~A  456 (536)
T KOG0540         378 ELCDQRNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGS-YGGNYAMCSRGYSGDINYAWPNA  456 (536)
T ss_pred             HHHHHCCCCEEEEECCCCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCCCCCCCCCCCCCEEEECCCC
T ss_conf             98872488679997357703362244414665304442454544675599992376-67742002666578605875632


Q ss_pred             CEEEECHHHHHHHHCCCCH-HH----HHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4012155442244215601-22----565542038848999789965262288984448989999999999999999985
Q gi|254780588|r  221 IYSVISPEGAASILWRDSS-RA----AQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETS  295 (317)
Q Consensus       221 ~ysvisPEg~AsILwkd~~-~a----~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~  295 (317)
T Consensus       457 ~IavmG~~~a~~Vi~q~~~e~a~~~~~~~~E~f-~npy~a~~Rg~~D~II~p-------------~~tR~vl~~~l~~~~  522 (536)
T KOG0540         457 RIAVMGGKQAANVIFQITLEKAVALKAPYIEKF-GNPYYAAARGWDDGIIDP-------------SDTRKVLGLDLQAAA  522 (536)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHH-CCCCHHHHHHCCCCCCCH-------------HHHHHHHHHHHHHHH
T ss_conf             155314544010211102555443104688873-593187774202445584-------------676678888899986


Q ss_pred             CCCHHH
Q ss_conf             899899
Q gi|254780588|r  296 TYSETE  301 (317)
Q Consensus       296 ~~~~~~  301 (317)
T Consensus       523 ~~pl~~  528 (536)
T KOG0540         523 NKPLQT  528 (536)
T ss_pred             CCCCCC
T ss_conf             487754