HHsearch alignment for GI: 254780588 and conserved domain: PRK00277
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed.
Probab=98.14 E-value=2.2e-05 Score=59.19 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred CCCCCCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 2677683689999999999--99719948999953532467784300279999999888623799889999616777754
Q gi|254780588|r 128 NFGSPRPEGYRKAVRLMEM--ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGA 205 (317)
Q Consensus 128 n~G~~~p~g~rKa~r~~~~--A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA 205 (317)
T Consensus 32 l~~~i~~~~a~~iia~llyL~~~~~~kpI~lyINSpGG~v~-----~--glaIy---D~m~~~~~~V~Tv~~G~aaS~as 101 (197)
T PRK00277 32 LGGEVEDHMANLIVAQLLFLEAEDPTKDIYLYINSPGGSVT-----A--GMAIY---DTMQFIKPDVSTICMGQAASMGA 101 (197)
T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH-----H--HHHHH---HHHHHCCCCEEEEEEEEECCCCC
T ss_conf 89810789999999999986461969998999979986687-----8--99999---99971799739998746002102
Q ss_pred CCCCCCC--CEEEECCCCEEEECHHHHH----HHHCCCC-------------------HHHHHHHHHC----CCCHHHHH
Q ss_conf 2113320--0022046740121554422----4421560-------------------1225655420----38848999
Q gi|254780588|r 206 MGIAAAN--FVYMLEHAIYSVISPEGAA----SILWRDS-------------------SRAAQAAIAM----KIIATDLQ 256 (317)
Q Consensus 206 ~a~~~~d--~v~m~~~s~ysvisPEg~A----sILwkd~-------------------~~a~eAAeal----klTa~DL~ 256 (317)
T Consensus 102 lIl~aG~kgkR~~~pns~iMiHqp~~g~~G~a~di~~~a~el~~~~~~i~~iya~~Tg~~~~~i~~~~~rd~~msa~EA~ 181 (197)
T PRK00277 102 FLLAAGTKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKIKKRLNEILAEHTGQSLEKIEKDTDRDNFMSAEEAK 181 (197)
T ss_pred HHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEECCHHHHH
T ss_conf 57760786634226044666314654667779999999999999999999999998793999999862478024699999
Q ss_pred HCCCCCEEEC
Q ss_conf 7899652622
Q gi|254780588|r 257 DLSIIDGIIP 266 (317)
Q Consensus 257 ~lGiID~II~ 266 (317)
T Consensus 182 ~yGliD~Il~ 191 (197)
T PRK00277 182 EYGLIDKVIT 191 (197)
T ss_pred HHCCCCEEEC
T ss_conf 8099978814