HHsearch alignment for GI: 254780588 and conserved domain: cd00394
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.62 E-value=2.7e-07 Score=72.84 Aligned_cols=91 Identities=18% Similarity=0.183 Sum_probs=72.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 67768368999999999999719--9489999535324677843002799999998886237998899996167777542
Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEMADRFK--IPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM 206 (317)
Q Consensus 129 ~G~~~p~g~rKa~r~~~~A~~f~--lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~ 206 (317)
T Consensus 5 ~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v-------~~~~~i~d---~i~~~~~~v~t~~~g~aaS~g~~ 74 (161)
T cd00394 5 NGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRV-------DAGMNIVD---ALQASRKPVIAYVGGQAASAGYY 74 (161)
T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH-------HHHHHHHH---HHHHCCCCEEEECCCCEEEHHHH
T ss_conf 655578999999999999983899997899998999888-------99999999---99961999999668737760456
Q ss_pred CCCCCCCEEEECCCCEEEECHHH
Q ss_conf 11332000220467401215544
Q gi|254780588|r 207 GIAAANFVYMLEHAIYSVISPEG 229 (317)
Q Consensus 207 a~~~~d~v~m~~~s~ysvisPEg 229 (317)
T Consensus 75 i~~a~~~~~~~p~s~v~~h~~~~ 97 (161)
T cd00394 75 IATAANKIVMAPGTRVGSHGPIG 97 (161)
T ss_pred HHHCCCCCCCCCCCEEEEECCCC
T ss_conf 65158853308874045525621