HHsearch alignment for GI: 254780588 and conserved domain: cd06558
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=97.85 E-value=0.00039 Score=50.38 Aligned_cols=138 Identities=19% Similarity=0.310 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCC-----------CHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 77683689999999999997-199489999535324-677843-----------00279999999888623799889999
Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAE-----------ARGQGEAIARATEMCLKLQVPILSII 196 (317)
Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE-----------~~G~~~aia~~l~~~~~~~vP~i~vv 196 (317)
T Consensus 21 Nal~~~~~~~l~~~~~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaai 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99899999999999999974999579999749987047997588872666668899999999999999997899999986
Q ss_pred ECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHHHH-HHCCCCHHHHHHCCCCCEEEC
Q ss_conf 6167777542113320002204674012------1554422442156---01225655-420388489997899652622
Q gi|254780588|r 197 IGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQAA-IAMKIIATDLQDLSIIDGIIP 266 (317)
Q Consensus 197 ~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~eAA-ealklTa~DL~~lGiID~II~ 266 (317)
T Consensus 101 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 180 (195)
T cd06558 101 NGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVP 180 (195)
T ss_pred CCCCCCCCCHHHHHCCEEEEECCCEEECCHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCCEEEEC
T ss_conf 88527775064661888998089857466211433887219999999859999999997398577999997696206857
Q ss_pred C
Q ss_conf 8
Q gi|254780588|r 267 E 267 (317)
Q Consensus 267 E 267 (317)
T Consensus 181 ~ 181 (195)
T cd06558 181 D 181 (195)
T ss_pred H
T ss_conf 8