HHsearch alignment for GI: 254780588 and conserved domain: pfam00574
>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=98.49 E-value=2.4e-06 Score=66.14 Aligned_cols=125 Identities=17% Similarity=0.147 Sum_probs=85.9
Q ss_pred CCCCCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 677683689999999999--997199489999535324677843002799999998886237998899996167777542
Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEM--ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM 206 (317)
Q Consensus 129 ~G~~~p~g~rKa~r~~~~--A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~ 206 (317)
T Consensus 22 ~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v----------~~g~aI~d~i~~~~~~V~Ti~~G~aaS~asl 91 (182)
T pfam00574 22 GGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSV----------TAGLAIYDTMQFIKPDVSTICLGLAASMGSF 91 (182)
T ss_pred CCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH----------HHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf 984368999999999999856296999899998999678----------9999999999847998489992036145532
Q ss_pred CCCCCC--CEEEECCCCEEEECHHHHHHHHCCCCHHHHHHHH--------------------------H----CCCCHHH
Q ss_conf 113320--0022046740121554422442156012256554--------------------------2----0388489
Q gi|254780588|r 207 GIAAAN--FVYMLEHAIYSVISPEGAASILWRDSSRAAQAAI--------------------------A----MKIIATD 254 (317)
Q Consensus 207 a~~~~d--~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAAe--------------------------a----lklTa~D 254 (317)
T Consensus 92 I~~aG~~g~R~~~p~s~~MiHq~~~---~~~G~~~di~~~~~~l~~~~~~i~~~ya~~tg~~~~~i~~~~~~d~~lta~E 168 (182)
T pfam00574 92 LLAAGTKGKRFALPNARIMIHQPLG---GAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKIEKDLDRDTFMSAEE 168 (182)
T ss_pred HHHCCCCCCEEECCCCCEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf 0102677744456570102563654---6664899999999999999999999999886949999999850783246999
Q ss_pred HHHCCCCCEEEC
Q ss_conf 997899652622
Q gi|254780588|r 255 LQDLSIIDGIIP 266 (317)
Q Consensus 255 L~~lGiID~II~ 266 (317)
T Consensus 169 A~~~GliD~Ii~ 180 (182)
T pfam00574 169 AKEYGLIDEVIE 180 (182)
T ss_pred HHHCCCCCEECC
T ss_conf 998399868505