HHsearch alignment for GI: 254780588 and conserved domain: pfam00574

>pfam00574 CLP_protease Clp protease. The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion.
Probab=98.49  E-value=2.4e-06  Score=66.14  Aligned_cols=125  Identities=17%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CCCCCHHHHHHHHHHHHH--HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf             677683689999999999--997199489999535324677843002799999998886237998899996167777542
Q gi|254780588|r  129 FGSPRPEGYRKAVRLMEM--ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM  206 (317)
Q Consensus       129 ~G~~~p~g~rKa~r~~~~--A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~  206 (317)
T Consensus        22 ~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v----------~~g~aI~d~i~~~~~~V~Ti~~G~aaS~asl   91 (182)
T pfam00574        22 GGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSV----------TAGLAIYDTMQFIKPDVSTICLGLAASMGSF   91 (182)
T ss_pred             CCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH----------HHHHHHHHHHHHCCCCCEEEEEEEEECCCCC
T ss_conf             984368999999999999856296999899998999678----------9999999999847998489992036145532


Q ss_pred             CCCCCC--CEEEECCCCEEEECHHHHHHHHCCCCHHHHHHHH--------------------------H----CCCCHHH
Q ss_conf             113320--0022046740121554422442156012256554--------------------------2----0388489
Q gi|254780588|r  207 GIAAAN--FVYMLEHAIYSVISPEGAASILWRDSSRAAQAAI--------------------------A----MKIIATD  254 (317)
Q Consensus       207 a~~~~d--~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAAe--------------------------a----lklTa~D  254 (317)
T Consensus        92 I~~aG~~g~R~~~p~s~~MiHq~~~---~~~G~~~di~~~~~~l~~~~~~i~~~ya~~tg~~~~~i~~~~~~d~~lta~E  168 (182)
T pfam00574        92 LLAAGTKGKRFALPNARIMIHQPLG---GAQGQASDIEIQAEEILKIRERLNEIYAEHTGQPLEKIEKDLDRDTFMSAEE  168 (182)
T ss_pred             HHHCCCCCCEEECCCCCEEEECCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHH
T ss_conf             0102677744456570102563654---6664899999999999999999999999886949999999850783246999


Q ss_pred             HHHCCCCCEEEC
Q ss_conf             997899652622
Q gi|254780588|r  255 LQDLSIIDGIIP  266 (317)
Q Consensus       255 L~~lGiID~II~  266 (317)
T Consensus       169 A~~~GliD~Ii~  180 (182)
T pfam00574       169 AKEYGLIDEVIE  180 (182)
T ss_pred             HHHCCCCCEECC
T ss_conf             998399868505