HHsearch alignment for GI: 254780588 and conserved domain: pfam01039
>pfam01039 Carboxyl_trans Carboxyl transferase domain. All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule.
Probab=100.00 E-value=1.8e-39 Score=301.11 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=184.7
Q ss_pred HHHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 8763500223-7999862254--506722753347897299998875380089998458775023442026776836899
Q gi|254780588|r 62 QVSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYR 138 (317)
Q Consensus 62 ~~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~r 138 (317)
T Consensus 247 ~vP~~~~~~yD~r~vi~~i~D~~sf~E~~~~--~g--~~ivtg~arl~G~~VGviAn~p--------~~~~G~l~~~aa~ 314 (487)
T pfam01039 247 IVPDDPKRPYDVREVIAGIVDEGSFFETKAG--YA--KTVVTGFARLGGIPVGVVANQP--------RVLAGVLFIDSAD 314 (487)
T ss_pred HCCCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCCEEEEEEECCCEEEEECCCC--------CCCCCCCCHHHHH
T ss_conf 1888777765399998871567754764344--46--6512667887385479983365--------4346753045589
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CCCCE
Q ss_conf 99999999997199489999535324677843002799999998886237998899996167777542113----32000
Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIA----AANFV 214 (317)
Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~----~~d~v 214 (317)
T Consensus 315 Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~G~i~~ga~~~~a~a~~~vP~itvi~rk~~G~~~~am~g~~~~~d~~ 394 (487)
T pfam01039 315 KAARFIRLCDAFNIPLVILVDVPGFLPGTDQEYGGILKHGAKLLYALAEATVPKITVIPRKAYGGAYVVMDSKINGADAV 394 (487)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCEE
T ss_conf 99999998633399769998489887788999746899999999999855898899997876455766415656788779
Q ss_pred EEECCCCEEEECHHHHHHHHCCCCHHHH-------------HHHH--HCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHH
Q ss_conf 2204674012155442244215601225-------------6554--203884899978996526228898444898999
Q gi|254780588|r 215 YMLEHAIYSVISPEGAASILWRDSSRAA-------------QAAI--AMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQT 279 (317)
Q Consensus 215 ~m~~~s~ysvisPEg~AsILwkd~~~a~-------------eAAe--alklTa~DL~~lGiID~II~EP~GGAHrd~~~~ 279 (317)
T Consensus 395 ~awP~a~~~vm~~egav~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~vD~vId---------P--- 462 (487)
T pfam01039 395 AAWPTARIAVMGPEGAVEIKFRKELAAATMRYKDLEALRAQKIAEYEEQLSPPYVAAARGFADLVID---------P--- 462 (487)
T ss_pred EECCCCCEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCC---------H---
T ss_conf 9979883623799999999878888644346869899999999999986199999987067587188---------8---
Q ss_pred HHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999999999858998
Q gi|254780588|r 280 ISSVGEIISQFLSETSTYSE 299 (317)
Q Consensus 280 ~~~lk~~i~~~L~~L~~~~~ 299 (317)
T Consensus 463 -~~tR~~l~~~l~~~~~k~~ 481 (487)
T pfam01039 463 -GRTRAKLVIALALLWHKPR 481 (487)
T ss_pred -HHHHHHHHHHHHHHHCCCC
T ss_conf -9999999999999864974