HHsearch results for GI: 254780588 and protein with PDBid: 1vrg_A
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=100.00 E-value=1.7e-43 Score=328.08 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=184.5
Q ss_pred HHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 763500223-79998622545--067227533478972999988753800899984587750234420267768368999
Q gi|254780588|r 63 VSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRK 139 (317)
Q Consensus 63 ~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rK 139 (317)
+++.+.+|| +.++|..++|+ |+|+.. .|+ +++||||||++|+||.||||+.+ +++|+++|++++|
T Consensus 286 vP~~~~~~yD~r~vi~~l~D~~~f~E~~~--~~g--~~vvtg~arl~G~pVgviAn~~~--------~~~G~~~~~~a~K 353 (527)
T 1vrg_A 286 LPDNPNKGYDVRDVIKRVVDHGEFFEVQP--YFA--KNIVIGFARIQGKTVGIVANQPS--------VLAGVLDIDSSDK 353 (527)
T ss_dssp SCSSTTSCCCTHHHHHHHSGGGCCEEEST--TSS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHC--CCC--CCEEEEEEEECCEEEEEEECCCC--------CCCCCCCCHHHHH
T ss_conf 78998988789999998468851200000--468--85799999999888889833663--------3378875047899
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEE
Q ss_conf 99999999971994899995353246778430027999999988862379988999961677775421133----20002
Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVY 215 (317)
Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~ 215 (317)
+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+|+||+|++++||+++++. +|+++
T Consensus 354 aarfi~lcd~~~lPlv~lvDtpGf~~G~~aE~~G~~~~gA~l~~a~a~~~vP~i~vi~gk~~Ggg~~am~~~~~~~d~~~ 433 (527)
T 1vrg_A 354 AARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVL 433 (527)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEE
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCCCCEEE
T ss_conf 99999985145986699950688688789999749999999999998389987999868866587761067777888899
Q ss_pred EECCCCEEEECHHHHHHHHCCCCHHHHHHHHHC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 204674012155442244215601225655420-----------388489997899652622889844489899999999
Q gi|254780588|r 216 MLEHAIYSVISPEGAASILWRDSSRAAQAAIAM-----------KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVG 284 (317)
Q Consensus 216 m~~~s~ysvisPEg~AsILwkd~~~a~eAAeal-----------klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk 284 (317)
+|++++++||+||||++|+||+...+.+.++.+ ..++....+.|.||+|| +| ..++
T Consensus 434 Awp~a~~~vm~pegaa~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VI-dP------------~~tR 500 (527)
T 1vrg_A 434 AWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVI-DP------------RETR 500 (527)
T ss_dssp ECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEEC-CG------------GGHH
T ss_pred ECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEE-CH------------HHHH
T ss_conf 9787718616999999988431211557989999999999999857999998757888108-88------------9999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999998589
Q gi|254780588|r 285 EIISQFLSETSTY 297 (317)
Q Consensus 285 ~~i~~~L~~L~~~ 297 (317)
+.|.+.|+.+...
T Consensus 501 ~~l~~~l~~~~~k 513 (527)
T 1vrg_A 501 KYIMRALEVCETK 513 (527)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999997606