HHsearch results for GI: 254780588 and protein with PDBid: 1vrg_A

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4
Probab=100.00  E-value=1.7e-43  Score=328.08  Aligned_cols=210  Identities=25%  Similarity=0.398  Sum_probs=184.5

Q ss_pred             HHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf             763500223-79998622545--067227533478972999988753800899984587750234420267768368999
Q gi|254780588|r   63 VSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRK  139 (317)
Q Consensus        63 ~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rK  139 (317)
                      +++.+.+|| +.++|..++|+  |+|+..  .|+  +++||||||++|+||.||||+.+        +++|+++|++++|
T Consensus       286 vP~~~~~~yD~r~vi~~l~D~~~f~E~~~--~~g--~~vvtg~arl~G~pVgviAn~~~--------~~~G~~~~~~a~K  353 (527)
T 1vrg_A          286 LPDNPNKGYDVRDVIKRVVDHGEFFEVQP--YFA--KNIVIGFARIQGKTVGIVANQPS--------VLAGVLDIDSSDK  353 (527)
T ss_dssp             SCSSTTSCCCTHHHHHHHSGGGCCEEEST--TSS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHCCCCCHHHHHC--CCC--CCEEEEEEEECCEEEEEEECCCC--------CCCCCCCCHHHHH
T ss_conf             78998988789999998468851200000--468--85799999999888889833663--------3378875047899


Q ss_pred             HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEE
Q ss_conf             99999999971994899995353246778430027999999988862379988999961677775421133----20002
Q gi|254780588|r  140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVY  215 (317)
Q Consensus       140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~  215 (317)
                      +.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+|+||+|++++||+++++.    +|+++
T Consensus       354 aarfi~lcd~~~lPlv~lvDtpGf~~G~~aE~~G~~~~gA~l~~a~a~~~vP~i~vi~gk~~Ggg~~am~~~~~~~d~~~  433 (527)
T 1vrg_A          354 AARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVL  433 (527)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEE
T ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCCCCEEE
T ss_conf             99999985145986699950688688789999749999999999998389987999868866587761067777888899


Q ss_pred             EECCCCEEEECHHHHHHHHCCCCHHHHHHHHHC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH
Q ss_conf             204674012155442244215601225655420-----------388489997899652622889844489899999999
Q gi|254780588|r  216 MLEHAIYSVISPEGAASILWRDSSRAAQAAIAM-----------KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVG  284 (317)
Q Consensus       216 m~~~s~ysvisPEg~AsILwkd~~~a~eAAeal-----------klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk  284 (317)
                      +|++++++||+||||++|+||+...+.+.++.+           ..++....+.|.||+|| +|            ..++
T Consensus       434 Awp~a~~~vm~pegaa~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VI-dP------------~~tR  500 (527)
T 1vrg_A          434 AWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVI-DP------------RETR  500 (527)
T ss_dssp             ECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEEC-CG------------GGHH
T ss_pred             ECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEE-CH------------HHHH
T ss_conf             9787718616999999988431211557989999999999999857999998757888108-88------------9999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999998589
Q gi|254780588|r  285 EIISQFLSETSTY  297 (317)
Q Consensus       285 ~~i~~~L~~L~~~  297 (317)
                      +.|.+.|+.+...
T Consensus       501 ~~l~~~l~~~~~k  513 (527)
T 1vrg_A          501 KYIMRALEVCETK  513 (527)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999997606