HHsearch results for GI: 254780588 and protein with PDBid: 2gtr_A
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=98.35 E-value=8e-06 Score=60.82 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=96.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC-------------HHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 77683689999999999997199489999535324-6778430-------------027999999988862379988999
Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA-------------RGQGEAIARATEMCLKLQVPILSI 195 (317)
Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~-------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317)
..++++-++-....++.++.-..-+|-+--.++++ .|.+-.+ ......+.+.+..+..+.+|+|+.
T Consensus 28 Nal~~~~~~el~~al~~~~~d~~~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 107 (261)
T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261)
T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 58899999999999999862997699997899864668887354221123320247899999988767875099989999
Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHH-HHHHCCCCHHHHHHCCCCCEEE
Q ss_conf 96167777542113320002204674012------1554422442156---012256-5542038848999789965262
Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQ-AAIAMKIIATDLQDLSIIDGII 265 (317)
Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~e-AAealklTa~DL~~lGiID~II 265 (317)
|-|.+.+||+.-...||.++|.++++|+. +.|.++++-++.. ..++.+ +-..-.++|++++++|+||+|+
T Consensus 108 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 187 (261)
T 2gtr_A 108 VNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVF 187 (261)
T ss_dssp ECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE
T ss_pred ECCEEEECCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf 87814662117530001412335456553210147778843477899981952224542356767788997679736870
Q ss_pred C
Q ss_conf 2
Q gi|254780588|r 266 P 266 (317)
Q Consensus 266 ~ 266 (317)
|
T Consensus 188 ~ 188 (261)
T 2gtr_A 188 W 188 (261)
T ss_dssp C
T ss_pred C
T ss_conf 8