HHsearch results for GI: 254780588 and protein with PDBid: 3gf3_A
>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*
Probab=100.00 E-value=2.3e-39 Score=298.77 Aligned_cols=239 Identities=21% Similarity=0.278 Sum_probs=192.8
Q ss_pred HHHHHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCC-----CHHHHHHCCCC
Q ss_conf 888763500223-7999862254--506722753347897299998875380089998458775-----02344202677
Q gi|254780588|r 60 KTQVSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD-----TKSRIKHNFGS 131 (317)
Q Consensus 60 ~v~~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~-----~~~~~~~n~G~ 131 (317)
...+.+.+.+|| +++.|..++| +|+|++++ |+ +++||||||++|+||.|||+|++.. .+.++.+++|+
T Consensus 313 ~~~vp~~~~~~yD~r~vi~~i~D~~sf~E~~~~--~g--~~vvtG~aRl~G~pVGviAn~~~~~~~~p~~~~~~~~~~G~ 388 (588)
T 3gf3_A 313 YSIIPMNQKRPYDIYEVIARLFDNSEFSEYKKG--YG--PEMVTGLAKVNGLLVGVIANVQGLLMNYPEYKQNSVGIGGK 388 (588)
T ss_dssp HHHSCSSTTCCCCHHHHHHHHSGGGBCEESSTT--SS--TTEEEEEEEETTEEEEEEEECCSEEETCCTTSSSCEEETTE
T ss_pred HHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 765430467777499999864555532320355--57--76326677648947999951455344565433562003786
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC-
Q ss_conf 6836899999999999971994899995353246778430027999999988862379988999961677775421133-
Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA- 210 (317)
Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~- 210 (317)
++|++++|+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+||||+|++++||+++++.
T Consensus 389 l~~~aa~Kaarfi~lcd~f~lPlv~lvD~pGf~~G~~~E~~Gii~~gA~~~~A~a~a~vP~isvi~rka~Ggg~~am~~~ 468 (588)
T 3gf3_A 389 LYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGP 468 (588)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCT
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCC
T ss_conf 67778999999998515479876999357887787688871499999999999871799979999787531456652475
Q ss_pred ---CCCEEEECC--CCEEEECHHHHHHHHCCCCH-HHHHHHH-------HC---------CCCHHHHHHCCCCCEEECCC
Q ss_conf ---200022046--74012155442244215601-2256554-------20---------38848999789965262288
Q gi|254780588|r 211 ---ANFVYMLEH--AIYSVISPEGAASILWRDSS-RAAQAAI-------AM---------KIIATDLQDLSIIDGIIPEP 268 (317)
Q Consensus 211 ---~d~v~m~~~--s~ysvisPEg~AsILwkd~~-~a~eAAe-------al---------klTa~DL~~lGiID~II~EP 268 (317)
+|.++||++ +-++||.|||++.|+||... +++++.+ .+ ..++...-+.+.||+||+
T Consensus 469 ~~~~d~~~a~~~p~a~~~vm~~ega~~i~~~~e~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~vId-- 546 (588)
T 3gf3_A 469 QGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVD-- 546 (588)
T ss_dssp TCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECC--
T ss_pred CCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC--
T ss_conf 568864687678876284258999999999999975316771445899999999999998469999986578781278--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHCC
Q ss_conf 9844489899999999999999999858998------9999999999997248
Q gi|254780588|r 269 IGGAHRNPAQTISSVGEIISQFLSETSTYSE------TEIREHRRQKYLNIGR 315 (317)
Q Consensus 269 ~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~------~~Li~~R~~Kf~~iG~ 315 (317)
| ...|..|...|+.+..... ..++-++..+|..+|+
T Consensus 547 -------P----~~TR~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 588 (588)
T 3gf3_A 547 -------M----TEVRPYIQAFTEAAYQNPQSICPMHQMLTPRSTREFETFGK 588 (588)
T ss_dssp -------G----GGHHHHHHHHHHHHTTSCSCCCCGGGCSHHHHHHHHHHHC-
T ss_pred -------H----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf -------3----99999999999999858766687546788431100024469