Query gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Match_columns 317 No_of_seqs 194 out of 1739 Neff 5.4 Searched_HMMs 23785 Date Tue May 31 19:54:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780588.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2f9i_A Acetyl-coenzyme A carbo 100.0 0 0 892.5 28.5 316 1-317 11-326 (327) 2 2f9y_A Acetyl-COA carboxylase, 100.0 0 0 861.3 19.3 315 1-315 21-338 (339) 3 1vrg_A Propionyl-COA carboxyla 100.0 1.7E-43 0 328.1 15.8 210 63-297 286-513 (527) 4 1x0u_A Hypothetical methylmalo 100.0 6.6E-43 0 324.0 14.4 210 63-297 281-508 (522) 5 3iav_A Propionyl-COA carboxyla 100.0 3.4E-42 0 318.9 15.7 212 61-297 286-516 (530) 6 2bzr_A Propionyl-COA carboxyla 100.0 6.7E-42 0 316.8 16.2 213 61-298 302-535 (548) 7 3n6r_B Propionyl-COA carboxyla 100.0 9.8E-41 4.2E-45 308.6 16.0 212 62-298 293-518 (531) 8 1on3_A Methylmalonyl-COA carbo 100.0 1.6E-40 7E-45 307.0 15.9 210 63-297 282-509 (523) 9 3gf3_A Glutaconyl-COA decarbox 100.0 2.3E-39 9.8E-44 298.8 15.4 239 60-315 313-588 (588) 10 1pix_A Glutaconyl-COA decarbox 100.0 8.4E-38 3.5E-42 287.7 16.3 221 62-299 312-564 (587) 11 3ff6_A Acetyl-COA carboxylase 100.0 7.6E-37 3.2E-41 280.9 13.1 200 63-266 357-627 (760) 12 3k8x_A Acetyl-COA carboxylase; 100.0 6.4E-35 2.7E-39 267.3 16.6 212 68-288 363-656 (758) 13 1pix_A Glutaconyl-COA decarbox 100.0 1.8E-28 7.7E-33 221.5 10.1 236 33-287 27-283 (587) 14 1on3_A Methylmalonyl-COA carbo 99.9 4.7E-21 2E-25 168.9 23.0 216 32-266 11-239 (523) 15 3gf3_A Glutaconyl-COA decarbox 99.9 3.2E-22 1.3E-26 177.2 16.5 232 35-286 29-285 (588) 16 2bzr_A Propionyl-COA carboxyla 99.9 4.8E-20 2E-24 161.8 22.3 226 34-286 26-265 (548) 17 1vrg_A Propionyl-COA carboxyla 99.9 1.5E-19 6.5E-24 158.1 23.7 223 31-287 13-256 (527) 18 3iav_A Propionyl-COA carboxyla 99.9 9.7E-20 4.1E-24 159.6 22.6 227 34-287 15-255 (530) 19 3n6r_B Propionyl-COA carboxyla 99.9 2.6E-19 1.1E-23 156.5 21.1 203 54-286 38-262 (531) 20 1x0u_A Hypothetical methylmalo 99.9 8.2E-19 3.5E-23 153.0 22.6 207 59-287 29-250 (522) 21 2f9y_B Acetyl-coenzyme A carbo 99.8 4.8E-19 2E-23 154.6 17.0 207 64-298 49-281 (304) 22 2f9i_B Acetyl-coenzyme A carbo 99.8 2.5E-18 1E-22 149.6 17.2 208 63-298 54-284 (285) 23 3k8x_A Acetyl-COA carboxylase; 99.7 1.1E-15 4.4E-20 130.9 15.5 180 72-266 61-319 (758) 24 3ff6_A Acetyl-COA carboxylase 99.7 6.6E-15 2.8E-19 125.3 17.2 195 68-285 46-317 (760) 25 3bpp_A 1510-N membrane proteas 98.7 1.8E-07 7.4E-12 72.6 10.5 128 129-266 16-173 (230) 26 2j5g_A ALR4455 protein; enzyme 98.6 2.7E-06 1.1E-10 64.2 14.7 137 130-267 46-205 (263) 27 3hp0_A Putative polyketide bio 98.4 6.6E-06 2.8E-10 61.4 12.0 138 131-268 30-188 (267) 28 2fbm_A Y chromosome chromodoma 98.4 1.1E-05 4.8E-10 59.7 13.0 138 130-267 46-207 (291) 29 2gtr_A CDY-like, chromodomain 98.3 8E-06 3.4E-10 60.8 11.5 137 130-266 28-188 (261) 30 2f6q_A Peroxisomal 3,2-trans-e 98.3 5.9E-05 2.5E-09 54.7 15.4 138 130-267 48-209 (280) 31 2a7k_A CARB; crotonase, antibi 98.3 3.3E-05 1.4E-09 56.4 13.5 162 130-304 22-205 (250) 32 3ot6_A Enoyl-COA hydratase/iso 98.3 2.2E-05 9.3E-10 57.7 12.2 135 131-266 28-182 (232) 33 3p2l_A ATP-dependent CLP prote 98.2 3.6E-06 1.5E-10 63.3 7.6 129 129-267 36-195 (201) 34 3lke_A Enoyl-COA hydratase; ny 98.2 4.4E-05 1.9E-09 55.6 12.6 138 130-267 26-189 (263) 35 2f6i_A ATP-dependent CLP prote 98.2 8.9E-06 3.7E-10 60.5 8.9 132 129-270 45-206 (215) 36 1yg6_A ATP-dependent CLP prote 98.2 5.5E-06 2.3E-10 62.0 7.5 133 125-267 28-191 (193) 37 3isa_A Putative enoyl-COA hydr 98.1 6.1E-05 2.6E-09 54.6 12.3 159 131-304 30-207 (254) 38 2ej5_A Enoyl-COA hydratase sub 98.1 4.7E-05 2E-09 55.4 11.6 138 130-267 25-182 (257) 39 3gow_A PAAG, probable enoyl-CO 98.1 0.00014 5.8E-09 52.1 13.9 138 130-267 22-179 (254) 40 1szo_A 6-oxocamphor hydrolase; 98.1 0.00011 4.8E-09 52.6 13.4 160 131-304 39-220 (257) 41 3oc7_A Enoyl-COA hydratase; se 98.1 0.00018 7.7E-09 51.2 14.1 152 108-267 19-195 (267) 42 1pjh_A Enoyl-COA isomerase; EC 98.1 6E-05 2.5E-09 54.6 11.7 140 131-270 32-204 (280) 43 1tg6_A Putative ATP-dependent 98.1 1.6E-05 6.6E-10 58.8 8.7 141 123-273 82-253 (277) 44 2cby_A ATP-dependent CLP prote 98.1 1.4E-05 6E-10 59.0 8.1 130 128-267 32-192 (208) 45 3h0u_A Putative enoyl-COA hydr 98.1 4.5E-05 1.9E-09 55.5 10.5 165 125-304 26-216 (289) 46 1ef8_A Methylmalonyl COA decar 98.1 7E-05 3E-09 54.1 11.4 137 131-267 27-184 (261) 47 1y7o_A ATP-dependent CLP prote 98.1 2.2E-05 9E-10 57.8 8.6 136 123-268 45-213 (218) 48 1uiy_A Enoyl-COA hydratase; ly 98.0 0.00023 9.6E-09 50.5 13.5 138 131-268 22-182 (253) 49 3he2_A Enoyl-COA hydratase ECH 98.0 0.00012 4.9E-09 52.6 12.0 137 130-266 43-194 (264) 50 3kqf_A Enoyl-COA hydratase/iso 98.0 9E-05 3.8E-09 53.4 11.3 138 130-267 31-190 (265) 51 2iex_A Dihydroxynapthoic acid 98.0 3.8E-05 1.6E-09 56.0 9.3 137 131-267 35-194 (272) 52 1wz8_A Enoyl-COA hydratase; ly 98.0 7.6E-05 3.2E-09 53.9 10.4 137 131-267 33-192 (264) 53 2q35_A CURF; crotonase, lyase; 98.0 5E-05 2.1E-09 55.2 9.4 136 131-266 26-177 (243) 54 3i47_A Enoyl COA hydratase/iso 98.0 0.00019 8.1E-09 51.0 12.4 137 130-266 26-185 (268) 55 2vx2_A Enoyl-COA hydratase dom 98.0 0.00052 2.2E-08 48.0 14.2 154 104-267 39-213 (287) 56 1sg4_A 3,2-trans-enoyl-COA iso 98.0 0.00026 1.1E-08 50.1 12.7 137 131-267 27-187 (260) 57 3myb_A Enoyl-COA hydratase; ss 97.9 0.00036 1.5E-08 49.1 13.2 139 130-268 48-207 (286) 58 1nzy_A Dehalogenase, 4-chlorob 97.9 0.00044 1.8E-08 48.5 13.6 137 130-266 25-187 (269) 59 3l3s_A Enoyl-COA hydratase/iso 97.9 0.00036 1.5E-08 49.1 13.1 160 131-303 29-214 (263) 60 3h02_A Naphthoate synthase; ID 97.9 8.3E-05 3.5E-09 53.6 9.8 137 131-267 50-210 (288) 61 1dci_A Dienoyl-COA isomerase; 97.9 0.00033 1.4E-08 49.4 12.6 137 131-267 27-196 (275) 62 2pbp_A Enoyl-COA hydratase sub 97.9 0.00022 9.3E-09 50.6 11.7 137 131-267 28-183 (258) 63 3pea_A Enoyl-COA hydratase/iso 97.9 0.00029 1.2E-08 49.8 11.8 138 130-267 27-186 (261) 64 3p5m_A Enoyl-COA hydratase/iso 97.9 0.00044 1.8E-08 48.5 12.4 137 131-267 29-180 (255) 65 3fdu_A Putative enoyl-COA hydr 97.8 0.0011 4.7E-08 45.6 14.0 138 131-268 28-188 (266) 66 2j5i_A P-hydroxycinnamoyl COA 97.8 0.00039 1.6E-08 48.8 11.6 138 130-267 31-194 (276) 67 3moy_A Probable enoyl-COA hydr 97.8 0.00019 8.1E-09 51.0 9.9 137 131-267 33-188 (263) 68 3njd_A Enoyl-COA hydratase; ss 97.8 0.00085 3.6E-08 46.5 13.1 136 130-267 57-242 (333) 69 3h81_A Enoyl-COA hydratase ECH 97.8 0.00011 4.5E-09 52.8 8.5 139 130-268 47-204 (278) 70 3g64_A Putative enoyl-COA hydr 97.8 0.00064 2.7E-08 47.3 12.4 137 131-267 40-202 (279) 71 3ome_A Enoyl-COA hydratase; ss 97.8 0.00036 1.5E-08 49.1 11.1 136 131-266 46-205 (282) 72 3hin_A Putative 3-hydroxybutyr 97.7 4.3E-05 1.8E-09 55.6 5.8 136 131-267 39-194 (275) 73 3p85_A Enoyl-COA hydratase; ss 97.7 0.00016 6.5E-09 51.7 8.0 138 130-267 47-196 (270) 74 1mj3_A Enoyl-COA hydratase, mi 97.7 0.00016 6.8E-09 51.5 7.9 138 131-268 30-186 (260) 75 3gkb_A Putative enoyl-COA hydr 97.6 0.00063 2.6E-08 47.4 10.3 141 124-266 26-194 (287) 76 1q52_A MENB; lyase, structural 97.6 0.0015 6.2E-08 44.8 11.7 137 131-267 60-236 (314) 77 3ju1_A Enoyl-COA hydratase/iso 97.5 0.0076 3.2E-07 39.7 15.0 161 99-267 41-229 (407) 78 2ppy_A Enoyl-COA hydratase; be 97.5 0.002 8.4E-08 43.8 11.8 142 125-268 27-191 (265) 79 1hzd_A AUH, AU-binding protein 97.5 0.00058 2.4E-08 47.6 8.2 138 130-267 34-193 (272) 80 3lao_A Enoyl-COA hydratase/iso 97.4 0.0002 8.2E-09 51.0 5.3 163 131-306 35-219 (258) 81 3bpt_A 3-hydroxyisobutyryl-COA 97.4 0.0033 1.4E-07 42.2 11.1 138 130-267 28-189 (363) 82 1wdk_A Fatty oxidation complex 97.3 0.0045 1.9E-07 41.3 10.9 136 130-267 30-191 (715) 83 3m6n_A RPFF protein; enoyl-COA 97.2 0.00095 4E-08 46.1 6.8 86 182-267 133-228 (305) 84 2np9_A DPGC; protein inhibitor 97.1 0.0001 4.2E-09 53.0 1.4 136 131-266 190-370 (440) 85 3bf0_A Protease 4; bacterial, 97.1 0.0018 7.7E-08 44.1 7.5 123 136-265 323-502 (593) 86 2x58_A Peroxisomal bifunctiona 97.1 0.0041 1.7E-07 41.6 9.0 138 130-267 27-179 (727) 87 2wtb_A MFP2, fatty acid multif 96.9 0.0016 6.8E-08 44.5 5.8 137 131-267 30-190 (725) 88 2w3p_A Benzoyl-COA-dihydrodiol 96.3 0.013 5.5E-07 38.0 7.1 83 184-266 124-221 (556) 89 2w6a_A ARF GTPase-activating p 80.2 1.9 7.9E-05 22.7 4.2 45 1-50 12-56 (63) 90 1g7s_A Translation initiation 74.7 3.2 0.00013 21.1 4.1 62 83-164 74-138 (594) 91 2qag_C Septin-7; cell cycle, c 71.8 2.8 0.00012 21.5 3.3 32 149-182 83-115 (418) 92 3fq8_A Glutamate-1-semialdehyd 69.8 6 0.00025 19.2 7.4 93 125-235 208-312 (427) 93 3bch_A 40S ribosomal protein S 63.7 4.1 0.00017 20.3 2.8 19 143-161 166-184 (253) 94 3cf4_G Acetyl-COA decarbonylas 62.1 8.3 0.00035 18.2 4.3 44 106-166 34-77 (170) 95 3ofo_B 30S ribosomal protein S 60.4 3.9 0.00017 20.4 2.2 21 142-162 163-183 (218) 96 1vi6_A 30S ribosomal protein S 59.2 5.5 0.00023 19.4 2.8 16 182-197 131-146 (208) 97 2ywe_A GTP-binding protein LEP 57.0 7.1 0.0003 18.6 3.0 24 141-164 115-141 (600) 98 1h65_A Chloroplast outer envel 55.8 10 0.00042 17.6 3.6 12 155-166 89-100 (270) 99 3jyv_B 40S ribosomal protein S 55.3 7 0.0003 18.7 2.8 21 142-162 123-143 (193) 100 2zkq_b 40S ribosomal protein S 54.8 6.7 0.00028 18.8 2.6 22 141-162 131-152 (295) 101 1yd7_A 2-keto acid:ferredoxin 54.2 10 0.00044 17.4 3.5 55 106-160 112-187 (395) 102 2vqe_B 30S ribosomal protein S 53.4 3.8 0.00016 20.5 1.2 22 141-162 171-192 (256) 103 3bbn_B Ribosomal protein S2; s 52.6 4.4 0.00019 20.1 1.4 128 3-162 39-191 (231) 104 3cb4_D GTP-binding protein LEP 52.4 9.1 0.00038 17.9 2.9 26 140-165 112-140 (599) 105 1ytl_A Acetyl-COA decarbonylas 49.1 13 0.00056 16.7 3.8 35 106-159 35-69 (174) 106 3dzv_A 4-methyl-5-(beta-hydrox 47.9 14 0.00058 16.6 4.0 57 105-163 39-98 (273) 107 1yix_A Deoxyribonuclease YCFH; 46.8 14 0.0006 16.5 8.3 133 139-313 112-253 (265) 108 2qn6_A Translation initiation 45.5 14 0.0006 16.5 3.0 21 97-118 102-122 (414) 109 1eg7_A Formyltetrahydrofolate 43.5 16 0.00067 16.1 4.5 100 108-227 326-440 (557) 110 3ghg_A Fibrinogen alpha chain; 41.9 10 0.00043 17.5 1.9 11 37-47 147-157 (562) 111 2xtp_A GTPase IMAP family memb 41.8 17 0.00071 15.9 5.3 13 155-167 73-85 (260) 112 3d3j_A Enhancer of mRNA-decapp 39.7 4 0.00017 20.4 -0.5 64 141-214 86-155 (306) 113 2him_A L-asparaginase 1; hydro 39.3 18 0.00077 15.7 2.8 89 53-158 81-170 (358) 114 2qag_B Septin-6, protein NEDD5 39.2 8.6 0.00036 18.0 1.1 18 153-170 95-112 (427) 115 1j6o_A TATD-related deoxyribon 39.1 19 0.00078 15.7 8.0 131 140-312 122-261 (268) 116 1ekq_A Hydroxyethylthiazole ki 39.1 19 0.00078 15.7 3.9 35 126-162 63-97 (272) 117 2pnv_A Small conductance calci 38.0 17 0.00071 15.9 2.5 18 33-50 21-38 (43) 118 3p26_A Elongation factor 1 alp 37.1 20 0.00083 15.5 3.6 12 142-153 161-172 (483) 119 3def_A T7I23.11 protein; chlor 36.9 20 0.00084 15.4 3.3 17 98-114 74-90 (262) 120 1zun_B Sulfate adenylate trans 36.3 20 0.00086 15.4 3.3 56 83-158 108-164 (434) 121 2p0u_A Stilbenecarboxylate syn 35.4 16 0.00069 16.0 2.1 40 192-231 173-213 (413) 122 3llc_A Putative hydrolase; str 35.3 21 0.00089 15.3 4.7 47 106-167 35-81 (270) 123 1g57_A DHBP synthase, 3,4-dihy 34.9 21 0.0009 15.2 3.5 34 165-199 144-178 (217) 124 2c31_A Oxalyl-COA decarboxylas 34.9 15 0.00064 16.2 1.9 40 150-201 442-481 (568) 125 2vbi_A Pyruvate decarboxylase; 34.9 21 0.0009 15.2 2.9 14 186-199 450-463 (566) 126 1v8a_A Hydroxyethylthiazole ki 34.7 22 0.00091 15.2 3.8 37 126-164 61-97 (265) 127 1t3j_A Mitofusin 1; coiled coi 34.7 22 0.00091 15.2 4.7 34 6-48 51-84 (96) 128 2rdo_7 EF-G, elongation factor 34.7 22 0.00091 15.2 4.0 15 4-18 148-162 (704) 129 3mmp_A Elongation factor TU 2, 34.4 15 0.00064 16.3 1.8 45 154-199 360-421 (678) 130 1wls_A L-asparaginase; structu 34.3 22 0.00092 15.2 2.7 88 53-158 53-141 (328) 131 1snn_A DHBP synthase, 3,4-dihy 33.1 23 0.00096 15.0 3.8 34 165-199 155-189 (227) 132 1ueh_A Undecaprenyl pyrophosph 32.5 23 0.00098 15.0 3.4 27 133-159 43-69 (253) 133 3iee_A Putative exported prote 32.3 23 0.00099 14.9 4.1 74 1-74 94-174 (270) 134 2d2r_A Undecaprenyl pyrophosph 32.0 24 0.001 14.9 3.2 33 126-158 30-66 (245) 135 2b94_A Purine nucleoside phosp 31.4 24 0.001 14.8 8.2 78 61-165 42-119 (267) 136 1puj_A YLQF, conserved hypothe 31.1 24 0.001 14.8 2.7 20 155-174 167-187 (282) 137 1t9b_A Acetolactate synthase, 31.0 25 0.001 14.8 2.6 14 186-199 554-567 (677) 138 3d3k_A Enhancer of mRNA-decapp 30.3 7.2 0.0003 18.6 -0.4 20 182-201 180-199 (259) 139 3gaa_A Uncharacterized protein 30.2 25 0.0011 14.7 4.2 29 131-159 97-126 (252) 140 2zkr_6 60S ribosomal protein L 29.8 26 0.0011 14.7 4.3 36 108-161 43-78 (115) 141 1d2e_A Elongation factor TU (E 29.8 26 0.0011 14.7 3.1 19 97-115 219-241 (397) 142 1efv_A Electron transfer flavo 29.5 23 0.00097 15.0 2.0 31 129-161 66-96 (315) 143 2pan_A Glyoxylate carboligase; 29.3 14 0.0006 16.5 1.0 17 184-200 481-497 (616) 144 1ybe_A Naprtase, nicotinate ph 28.8 10 0.00043 17.5 0.1 19 145-163 275-294 (449) 145 2d3m_A Pentaketide chromone sy 28.5 27 0.0011 14.5 2.4 15 198-212 174-188 (406) 146 1fzc_B Fibrin; blood coagulati 28.3 27 0.0011 14.5 3.1 46 6-51 1-46 (328) 147 3fim_B ARYL-alcohol oxidase; A 28.2 14 0.00058 16.6 0.7 14 154-167 318-331 (566) 148 3ddo_A Urdpase, upase, uridine 28.1 27 0.0012 14.5 7.9 76 62-164 23-98 (253) 149 1k4i_A 3,4-dihydroxy-2-butanon 28.0 18 0.00075 15.8 1.2 38 164-202 143-181 (233) 150 3ble_A Citramalate synthase fr 26.7 29 0.0012 14.3 3.4 30 137-166 168-197 (337) 151 3cm0_A Adenylate kinase; ATP-b 26.7 20 0.00084 15.4 1.3 23 134-156 12-34 (186) 152 2wlt_A L-asparaginase; hydrola 26.4 23 0.00096 15.0 1.6 89 53-157 63-154 (332) 153 1t0k_B YL32, RP73, 60S ribosom 26.2 22 0.00094 15.1 1.5 23 139-161 52-74 (105) 154 2vg0_A Short-chain Z-isoprenyl 25.8 30 0.0013 14.2 4.3 28 134-161 30-57 (227) 155 2qpt_A EH domain-containing pr 25.7 23 0.00099 14.9 1.5 15 155-169 156-170 (550) 156 1jwy_B Dynamin A GTPase domain 25.7 30 0.0013 14.2 4.9 16 151-166 129-144 (315) 157 2iht_A Carboxyethylarginine sy 25.5 17 0.00072 15.9 0.8 10 214-223 485-494 (573) 158 3dfz_A SIRC, precorrin-2 dehyd 25.1 31 0.0013 14.1 2.6 28 102-146 26-53 (223) 159 2ve7_C Kinetochore protein NUF 24.6 8.1 0.00034 18.2 -1.0 29 74-104 190-218 (250) 160 1z7d_A Ornithine aminotransfer 24.6 32 0.0013 14.0 8.7 93 125-233 221-322 (433) 161 1vq8_F 50S ribosomal protein L 24.2 23 0.00098 15.0 1.3 26 1-27 1-26 (120) 162 3foz_A TRNA delta(2)-isopenten 23.7 33 0.0014 13.9 2.5 109 138-252 22-179 (316) 163 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 23.7 28 0.0012 14.4 1.6 64 194-258 118-184 (197) 164 2vg3_A Undecaprenyl pyrophosph 23.5 33 0.0014 13.9 3.3 35 124-158 68-106 (284) 165 3iqw_A Tail-anchored protein t 23.4 33 0.0014 13.9 6.3 27 132-158 231-257 (334) 166 2qvb_A Haloalkane dehalogenase 23.3 26 0.0011 14.6 1.4 73 133-211 40-117 (297) 167 1zbt_A RF-1, peptide chain rel 23.3 32 0.0014 14.0 1.9 23 2-24 10-32 (371) 168 2d1p_C TUSB, hypothetical prot 22.9 32 0.0013 14.0 1.8 61 210-281 23-84 (95) 169 1r48_A Proline/betaine transpo 22.4 35 0.0015 13.7 2.8 14 35-48 15-28 (33) 170 3nxk_A Cytoplasmic L-asparagin 22.1 24 0.001 14.8 1.0 80 53-148 67-146 (334) 171 2jf7_A Strictosidine-O-beta-D- 21.9 35 0.0015 13.7 3.5 63 132-197 391-464 (532) 172 1sfx_A Conserved hypothetical 21.9 35 0.0015 13.7 5.7 66 232-297 28-104 (109) 173 1j8m_F SRP54, signal recogniti 21.4 36 0.0015 13.6 10.3 26 140-166 169-194 (297) 174 2fek_A Low molecular weight pr 21.3 36 0.0015 13.6 2.9 33 265-297 133-165 (167) 175 4pga_A Glutaminase-asparaginas 21.0 21 0.00089 15.3 0.5 81 53-149 68-149 (337) 176 2uz1_A Benzaldehyde lyase; thi 21.0 37 0.0016 13.5 1.9 45 145-201 432-477 (563) 177 2aka_B Dynamin-1; fusion prote 20.9 37 0.0016 13.5 5.9 48 152-199 124-172 (299) 178 1o97_D Electron transferring f 20.8 37 0.0016 13.5 4.3 28 132-161 70-97 (320) 179 1zxa_A CGMP-dependent protein 20.8 37 0.0016 13.5 4.1 36 6-46 15-50 (67) 180 1wf3_A GTP-binding protein; GT 20.4 38 0.0016 13.5 4.2 10 155-164 57-66 (301) 181 1q1g_A Uridine phosphorylase p 20.2 38 0.0016 13.4 8.3 69 73-165 30-98 (276) 182 2w6k_A COBE; biosynthetic prot 20.2 38 0.0016 13.4 2.3 16 142-157 59-74 (145) 183 3ju2_A Uncharacterized protein 20.1 38 0.0016 13.4 6.6 31 135-167 81-111 (284) No 1 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=100.00 E-value=0 Score=892.48 Aligned_cols=316 Identities=47% Similarity=0.786 Sum_probs=310.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCC Q ss_conf 97531455789999999999997422366677699999999999999999742699999888763500223799986225 Q gi|254780588|r 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLF 80 (317) Q Consensus 1 M~~yLdFEkpI~eLe~kI~eL~~~~~~~~~~~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~ 80 (317) |++||||||||+||++||++|++.+. .++.++++||.+|++++++++++||+||||||+||+||||+||+++|||+++| T Consensus 11 ~~~~LdFEkpI~eLe~kI~eL~~~~~-~~~~d~~~ei~~Le~k~~~l~~~iy~~Ls~wq~Vq~ARhp~RP~~~DyI~~if 89 (327) T 2f9i_A 11 RGSMLDFEKPLFEIRNKIESLKESQD-KNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIF 89 (327) T ss_dssp SSCCCGGGHHHHHHHHHHHCC------------CTTHHHHHHHHHHHHHHHHHSCCHHHHHHHHTBTTSCCHHHHHHHHC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHC T ss_conf 66656742579999999999874550-56787799999999999999999870899999999974789997799998734 Q ss_pred CCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 45067227533478972999988753800899984587750234420267768368999999999999719948999953 Q gi|254780588|r 81 THFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDT 160 (317) Q Consensus 81 ~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDt 160 (317) |||+||||||.|+||+||++|+|+|+|+||+|||||||+++++|++|||||++|+|||||+|+|++|++|++|||||||| T Consensus 90 ddf~eLhGDR~~~dD~aii~g~a~~~g~~v~vig~~kg~~~~e~~~~nfGm~~pegyrKA~R~m~~Aekf~~Piit~IDT 169 (327) T 2f9i_A 90 DSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDT 169 (327) T ss_dssp EEEEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred CCCEEEECCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 66478505655676622445435407805899975057665411032289999799999999999999749977998427 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCCCCHH Q ss_conf 53246778430027999999988862379988999961677775421133200022046740121554422442156012 Q gi|254780588|r 161 AGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240 (317) Q Consensus 161 pGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwkd~~~ 240 (317) ||||||.+||++||+++||+|+++|++++||+||||+||||||||||+++||+|+||||||||||||||||||||||+++ T Consensus 170 pGA~pg~~aEe~Gqa~aIA~~l~~~~~l~vP~isvIiGEGgSGGAlal~~ad~v~mle~a~ysVisPEg~asIlwkd~~~ 249 (327) T 2f9i_A 170 KGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249 (327) T ss_dssp SCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBSSCHHHHHHHHSSCGGG T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCEEEEECCEEEEEECHHHHHHHHCCCCHH T ss_conf 98678877441489999999999985899997999975755531134533784887457189995667777885458125 Q ss_pred HHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC Q ss_conf 25655420388489997899652622889844489899999999999999999858998999999999999724869 Q gi|254780588|r 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNIGRNL 317 (317) Q Consensus 241 a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~~R~~Kf~~iG~~l 317 (317) +++||++|||||+||+++||||+|||||+||||+||..++.+||++|.++|++|.+++.++|+++||+|||+||+|. T Consensus 250 a~eAAe~lklTA~dLl~lGiID~II~EP~GgAh~d~~~~~~~lk~~i~~~L~~L~~~~~~~Ll~~R~~Kfr~iG~~~ 326 (327) T 2f9i_A 250 AKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYI 326 (327) T ss_dssp HHHHHHHHTCBHHHHHHTTSSSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHTCCCEE T ss_pred HHHHHHHCCCCHHHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE T ss_conf 89999862079999997799728716999855359999999999999999999977999999999999999637731 No 2 >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=100.00 E-value=0 Score=861.26 Aligned_cols=315 Identities=49% Similarity=0.849 Sum_probs=308.7 Q ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH Q ss_conf 97-53145578999999999999742236--6677699999999999999999742699999888763500223799986 Q gi|254780588|r 1 MR-HYLDFEEPISDLEAKIHELKKLSRED--INEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYIN 77 (317) Q Consensus 1 M~-~yLdFEkpI~eLe~kI~eL~~~~~~~--~~~~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~ 77 (317) |+ |||||||||+||++||++|+..+.++ .+.++++||.+|++++++++++||+||||||+||+||||+||+++|||+ T Consensus 21 M~~~yLdFEkpi~eLe~kI~eL~~~~~~~~~~~~d~~~ei~~Le~k~~~~~~~iy~~Lt~wq~Vq~ARhP~RP~~~DyI~ 100 (339) T 2f9y_A 21 MSLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVR 100 (339) T ss_dssp ---CCCSTTHHHHHTTTTTTC---------------CCGGGGTHHHHHTTTTHHHHTCCHHHHHHHHTCTTCCCHHHHHH T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHH T ss_conf 57533572327999999999998665126534688899999999999999999873799999999971899965799997 Q ss_pred HCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 22545067227533478972999988753800899984587750234420267768368999999999999719948999 Q gi|254780588|r 78 SLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISF 157 (317) Q Consensus 78 ~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~l 157 (317) ++|+||+||||||.|+||++|++|+|+++|+||+|||||||++|++|+.|||||++|+|||||+|+|++|++|++||||| T Consensus 101 ~lf~df~eL~GDr~~~dD~aii~G~ar~~g~~v~vig~~kg~~~~~~~~~nfG~~~pegyrKA~R~m~laekf~iPIit~ 180 (339) T 2f9y_A 101 LAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF 180 (339) T ss_dssp HHCEEEEECCCCSSSCCCTTEEEEEEEETTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEE T ss_pred HCCCCEEEECCCCCCCCCHHHHHHEEEEECCEEEEEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 54674699315765565442431203650553799862267762321002688888799999999999999739966998 Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCCC Q ss_conf 95353246778430027999999988862379988999961677775421133200022046740121554422442156 Q gi|254780588|r 158 IDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRD 237 (317) Q Consensus 158 vDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwkd 237 (317) |||||||||.+||++||+++||+|+++|++++||+||||+||||||||||++++|+|+|||||||||||||||||||||| T Consensus 181 vDTpGa~pG~~aEerG~~~aiA~~l~~~~~l~VP~IsvVigeg~sGGAlam~~~D~vlmle~A~ySVisPEg~AsILwrd 260 (339) T 2f9y_A 181 IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKS 260 (339) T ss_dssp EEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECTTCEEESSCHHHHHHHHSSC T ss_pred EECCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCHHHCCHHHHHEEECHHHCHHHCCCC T ss_conf 52798688700022379999999999997699987999977644543211135214312302250362433210000477 Q ss_pred CHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC Q ss_conf 012256554203884899978996526228898444898999999999999999998589989999999999997248 Q gi|254780588|r 238 SSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNIGR 315 (317) Q Consensus 238 ~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~~R~~Kf~~iG~ 315 (317) ++++++||++|++||+||+++||||+|||||+||||+|+..++.+++.+|.++|++|..++.++|+++||+||++||+ T Consensus 261 ~~~a~~AAe~lkita~dl~~~giID~II~EP~ggAhrd~~~~~~~l~~~i~~~L~~L~~~~~~~l~~~R~~kf~~~G~ 338 (339) T 2f9y_A 261 ADKAPLAAEAMGIIRPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGY 338 (339) T ss_dssp STTHHHHHHHHTCSHHHHHTTTSCSCCCCCSTTCGGGCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHSSC T ss_pred HHHHHHHHHHHHHCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC T ss_conf 124599999987379999977997187058998564699999999999999999999679999999999999997079 No 3 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Probab=100.00 E-value=1.7e-43 Score=328.08 Aligned_cols=210 Identities=25% Similarity=0.398 Sum_probs=184.5 Q ss_pred HHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHH Q ss_conf 763500223-79998622545--067227533478972999988753800899984587750234420267768368999 Q gi|254780588|r 63 VSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRK 139 (317) Q Consensus 63 ~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rK 139 (317) +++.+.+|| +.++|..++|+ |+|+.. .|+ +++||||||++|+||.||||+.+ +++|+++|++++| T Consensus 286 vP~~~~~~yD~r~vi~~l~D~~~f~E~~~--~~g--~~vvtg~arl~G~pVgviAn~~~--------~~~G~~~~~~a~K 353 (527) T 1vrg_A 286 LPDNPNKGYDVRDVIKRVVDHGEFFEVQP--YFA--KNIVIGFARIQGKTVGIVANQPS--------VLAGVLDIDSSDK 353 (527) T ss_dssp SCSSTTSCCCTHHHHHHHSGGGCCEEEST--TSS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHCCCCCHHHHHC--CCC--CCEEEEEEEECCEEEEEEECCCC--------CCCCCCCCHHHHH T ss_conf 78998988789999998468851200000--468--85799999999888889833663--------3378875047899 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEE Q ss_conf 99999999971994899995353246778430027999999988862379988999961677775421133----20002 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVY 215 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~ 215 (317) +.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+|+||+|++++||+++++. +|+++ T Consensus 354 aarfi~lcd~~~lPlv~lvDtpGf~~G~~aE~~G~~~~gA~l~~a~a~~~vP~i~vi~gk~~Ggg~~am~~~~~~~d~~~ 433 (527) T 1vrg_A 354 AARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVL 433 (527) T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEE T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCCCCEEE T ss_conf 99999985145986699950688688789999749999999999998389987999868866587761067777888899 Q ss_pred EECCCCEEEECHHHHHHHHCCCCHHHHHHHHHC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH Q ss_conf 204674012155442244215601225655420-----------388489997899652622889844489899999999 Q gi|254780588|r 216 MLEHAIYSVISPEGAASILWRDSSRAAQAAIAM-----------KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVG 284 (317) Q Consensus 216 m~~~s~ysvisPEg~AsILwkd~~~a~eAAeal-----------klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk 284 (317) +|++++++||+||||++|+||+...+.+.++.+ ..++....+.|.||+|| +| ..++ T Consensus 434 Awp~a~~~vm~pegaa~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VI-dP------------~~tR 500 (527) T 1vrg_A 434 AWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVI-DP------------RETR 500 (527) T ss_dssp ECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEEC-CG------------GGHH T ss_pred ECCCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEE-CH------------HHHH T ss_conf 9787718616999999988431211557989999999999999857999998757888108-88------------9999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998589 Q gi|254780588|r 285 EIISQFLSETSTY 297 (317) Q Consensus 285 ~~i~~~L~~L~~~ 297 (317) +.|.+.|+.+... T Consensus 501 ~~l~~~l~~~~~k 513 (527) T 1vrg_A 501 KYIMRALEVCETK 513 (527) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999997606 No 4 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Probab=100.00 E-value=6.6e-43 Score=323.96 Aligned_cols=210 Identities=26% Similarity=0.420 Sum_probs=182.2 Q ss_pred HHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHH Q ss_conf 763500223-79998622545--067227533478972999988753800899984587750234420267768368999 Q gi|254780588|r 63 VSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRK 139 (317) Q Consensus 63 ~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rK 139 (317) +.+.+.||+ +.+.|..++|+ |+|++++ |+ +++||||+|++|+||.|||++ +.+++|+++|++++| T Consensus 281 vP~~~~~~yd~r~vi~~i~D~~~f~E~~~~--~g--~~vvtg~arl~G~~VGvvAn~--------p~~~~G~~~~~~a~K 348 (522) T 1x0u_A 281 VPNDAAKPYNMREIIYKIVDNGEFLEVHKH--WA--QNIIVGFARIAGNVVGIVANN--------PEEFGGSIDIDAADK 348 (522) T ss_dssp SCSSSSCCCCHHHHHHHHSGGGCCEEETTT--SC--TTEEEEEEEETTEEEEEEEEC--------TTTGGGCBCHHHHHH T ss_pred CCCCCCCCCCCHHHEEEECCCCCEEEEECC--CC--CCEEEEEEEECCCEEEEECCC--------CCCCCCCCCHHHHHH T ss_conf 577668777705420364157734776437--57--846788888869266897778--------644678777377999 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEE Q ss_conf 99999999971994899995353246778430027999999988862379988999961677775421133----20002 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVY 215 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~ 215 (317) +.|||++|++|+||||||+|||||++|.++|++|+.+++|+++.++++++||+|+||+|++++||+++++. +|+++ T Consensus 349 aarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~Gi~~~ga~~~~a~a~~~vP~isvi~~~~~Ggg~~am~~~~~~~d~~~ 428 (522) T 1x0u_A 349 AARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVY 428 (522) T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEE T ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCEEE T ss_conf 99999733002754799842787777679999729999999999998389987999867654667775426677888799 Q ss_pred EECCCCEEEECHHHHHHHHCCCC-HHHHHHHHHCC----------CCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH Q ss_conf 20467401215544224421560-12256554203----------88489997899652622889844489899999999 Q gi|254780588|r 216 MLEHAIYSVISPEGAASILWRDS-SRAAQAAIAMK----------IIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVG 284 (317) Q Consensus 216 m~~~s~ysvisPEg~AsILwkd~-~~a~eAAealk----------lTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk 284 (317) +|++++++||+|||+++|+||+. .++++..+.++ .++..+.+.|+||+|| +| ...+ T Consensus 429 awP~a~~~vm~pEgaa~i~~r~~l~~a~~~~~~~~~~~~~~~~~~~~~~~aa~~g~iD~VI-dP------------~~tR 495 (522) T 1x0u_A 429 AWPTAEIAVTGPEGAVRILYRKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVI-EP------------KDTR 495 (522) T ss_dssp ECTTCEEESSCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHHHHHHSSSHHHHHTTSSSEEC-CG------------GGHH T ss_pred ECCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEE-CH------------HHHH T ss_conf 9675779845999999998676564378989999999999998757999998668857328-87------------9999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998589 Q gi|254780588|r 285 EIISQFLSETSTY 297 (317) Q Consensus 285 ~~i~~~L~~L~~~ 297 (317) +.|.+.|+.|... T Consensus 496 ~~l~~~L~~~~~k 508 (522) T 1x0u_A 496 RVIVAGLEMLKTK 508 (522) T ss_dssp HHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999997627 No 5 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Probab=100.00 E-value=3.4e-42 Score=318.89 Aligned_cols=212 Identities=26% Similarity=0.390 Sum_probs=185.0 Q ss_pred HHHHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHH Q ss_conf 88763500223-79998622545--0672275334789729999887538008999845877502344202677683689 Q gi|254780588|r 61 TQVSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGY 137 (317) Q Consensus 61 v~~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~ 137 (317) .-+.+.+.||+ +.++|..++|+ |+|+. ..|+ +++||||||++|+||.|||++ +.+++|+++|+++ T Consensus 286 ~ivP~~~~~~yd~r~vi~~i~D~~~f~E~~--~~~g--~~ivtg~arl~G~~VGviAn~--------p~~~~G~~~~~~a 353 (530) T 3iav_A 286 TIVPDSANQPYDMHSVIEHVLDDAEFFETQ--PLFA--PNILTGFGRVEGRPVGIVANQ--------PMQFAGCLDITAS 353 (530) T ss_dssp GSSCSSTTCCCCHHHHHHTTSGGGCCEEES--TTSC--TTEEEEEEEETTEEEEEEEEC--------TTSGGGCBCHHHH T ss_pred CCCCCCCCCCCCCHHHCEEEEECCCCEEEC--CCCC--CCEEEEEEEECCEEEEEECCC--------CCCCCCCCCCCHH T ss_conf 037787899874040066777566322202--4558--852788999877589997557--------3223688785569 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCC Q ss_conf 9999999999971994899995353246778430027999999988862379988999961677775421133----200 Q gi|254780588|r 138 RKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANF 213 (317) Q Consensus 138 rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~ 213 (317) +|+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+||||+|++++||+++++. +|+ T Consensus 354 ~Kaarfi~lcd~~~iPlv~lvDtpGf~~G~~~E~~G~~~~gA~l~~a~a~~~vP~isviigka~Ggg~~am~~~~~~~d~ 433 (530) T 3iav_A 354 EKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVVMGSKHLGADL 433 (530) T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSE T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCE T ss_conf 99999999986369965899744676788899997699999999999983899869999898540887874244568887 Q ss_pred EEEECCCCEEEECHHHHHHHHCCCCH-HHHHHHHHC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHH Q ss_conf 02204674012155442244215601-225655420-----------388489997899652622889844489899999 Q gi|254780588|r 214 VYMLEHAIYSVISPEGAASILWRDSS-RAAQAAIAM-----------KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTIS 281 (317) Q Consensus 214 v~m~~~s~ysvisPEg~AsILwkd~~-~a~eAAeal-----------klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~ 281 (317) +++|++++++||+||||++|+||+.. .+.+.++++ ..++....+.+.||+||+ | . T Consensus 434 ~~AwP~a~~~vm~~egaa~i~~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~vD~vId-P------------~ 500 (530) T 3iav_A 434 NLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIM-P------------S 500 (530) T ss_dssp EEECTTCEEESSCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHHHHSSSHHHHHTTSSSEECC-G------------G T ss_pred EEECCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC-H------------H T ss_conf 99968775971699999999976556427777899999999999988569899987478787478-9------------9 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 9999999999998589 Q gi|254780588|r 282 SVGEIISQFLSETSTY 297 (317) Q Consensus 282 ~lk~~i~~~L~~L~~~ 297 (317) .+|+.|.+.|+.|.+. T Consensus 501 dtR~~L~~~L~~l~~k 516 (530) T 3iav_A 501 DTRRHIVRGLRQLRTK 516 (530) T ss_dssp GHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHC T ss_conf 9999999999998616 No 6 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Probab=100.00 E-value=6.7e-42 Score=316.81 Aligned_cols=213 Identities=22% Similarity=0.350 Sum_probs=184.7 Q ss_pred HHHHHCCHHHH-HHHHHHHCCCC-EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHH Q ss_conf 88763500223-79998622545-06722753347897299998875380089998458775023442026776836899 Q gi|254780588|r 61 TQVSRHPNRPH-YIDYINSLFTH-FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYR 138 (317) Q Consensus 61 v~~aRh~~Rp~-~~dyi~~l~~d-f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~r 138 (317) ..+.+.+.||| ++++|..++|+ |+|++++ |+ +++||||||++|+||.||||+ +.+++|+++|++++ T Consensus 302 ~~iP~~~~~~yd~r~vi~~i~D~sf~E~~~~--~g--~~~vtg~aRl~G~~VGviAn~--------~~~~~G~l~~~aa~ 369 (548) T 2bzr_A 302 TLIPDSPNQPYDMHEVITRLLDDEFLEIQAG--YA--QNIVVGFGRIDGRPVGIVANQ--------PTHFAGCLDINASE 369 (548) T ss_dssp GTSCSSTTCCCCTHHHHHHHSSSCCEEESTT--SS--TTEEEEEEEETTEEEEEEEEC--------TTSGGGCBCHHHHH T ss_pred HHCCCCCCCCCCHHHHHHHHHCCCCCEECCC--CC--CCEEEEEEEECCCEEEEEECC--------CCCCCCCCCCHHHH T ss_conf 3067789986628766576616862110466--56--864589999769479998156--------41336787806789 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCC----CCCCE Q ss_conf 99999999997199489999535324677843002799999998886237998899996167777542113----32000 Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIA----AANFV 214 (317) Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~----~~d~v 214 (317) |+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+|+||+|++++||+++++ .+|.+ T Consensus 370 Kaarfi~lcd~f~iPlv~lvD~pGf~~G~~~E~~gi~~~ga~l~~A~a~a~vP~itvi~rka~G~g~~am~~~~~~~d~~ 449 (548) T 2bzr_A 370 KAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVN 449 (548) T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCEE T ss_conf 99999999874389816997489878768999974999999999999828988699997886545766525766788879 Q ss_pred EEECCCCEEEECHHHHHHHHCCCCHHHHH-------H------HHH--CCCCHHHHHHCCCCCEEECCCCCCCCCCHHHH Q ss_conf 22046740121554422442156012256-------5------542--03884899978996526228898444898999 Q gi|254780588|r 215 YMLEHAIYSVISPEGAASILWRDSSRAAQ-------A------AIA--MKIIATDLQDLSIIDGIIPEPIGGAHRNPAQT 279 (317) Q Consensus 215 ~m~~~s~ysvisPEg~AsILwkd~~~a~e-------A------Aea--lklTa~DL~~lGiID~II~EP~GGAHrd~~~~ 279 (317) ++|+++.++||+|||+++|+||+.....+ + ++. ...++....+.+.||+||+ | T Consensus 450 ~AwP~a~~~vm~~egaa~i~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~iD~VId-P----------- 517 (548) T 2bzr_A 450 LAWPTAQIAVMGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIP-P----------- 517 (548) T ss_dssp EECTTCEEESSCHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHSBSHHHHHTTSSSEECC-G----------- T ss_pred EECCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEC-H----------- T ss_conf 9857654850799999999989998751116658789999999999986479999987288780377-8----------- Q ss_pred HHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999985899 Q gi|254780588|r 280 ISSVGEIISQFLSETSTYS 298 (317) Q Consensus 280 ~~~lk~~i~~~L~~L~~~~ 298 (317) ..+|..|...|+.+.+.. T Consensus 518 -~dTR~~L~~~l~~~~~k~ 535 (548) T 2bzr_A 518 -SHTRGYIGTALRLLERKI 535 (548) T ss_dssp -GGHHHHHHHHHHHTTTC- T ss_pred -HHHHHHHHHHHHHHHCCC T ss_conf -999999999999986156 No 7 >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114} Probab=100.00 E-value=9.8e-41 Score=308.57 Aligned_cols=212 Identities=22% Similarity=0.352 Sum_probs=183.5 Q ss_pred HHHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHH Q ss_conf 8763500223-79998622545--06722753347897299998875380089998458775023442026776836899 Q gi|254780588|r 62 QVSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYR 138 (317) Q Consensus 62 ~~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~r 138 (317) .+.+.+.+|| +.+.|..++|+ |+|+.. .|+ +++|||||||+|+||.||||+. .+++|+++|++++ T Consensus 293 ~vP~d~~~~yd~r~ii~~~~D~~~f~E~~~--~~g--~~ivtg~aRi~G~~VGivAn~~--------~~~~G~~~~~~a~ 360 (531) T 3n6r_B 293 LVPDNPNTPYDMKELIHKLADEGDFYEIQE--EFA--KNIITGFIRLEGRTVGVVANQP--------LVLAGCLDIDSSR 360 (531) T ss_dssp TSCSSTTCCCCHHHHHHHHSTTSCCEEEST--TSS--TTEEEEEEEETTEEEEEEEECT--------TTGGGCBCHHHHH T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEEEEC--CCC--CCCEEEEEEECCCEEEEECCCC--------HHCCCCCCHHHHH T ss_conf 478999886536765221256751023130--417--7614688898696799982451--------1026873046899 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCE Q ss_conf 999999999971994899995353246778430027999999988862379988999961677775421133----2000 Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFV 214 (317) Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v 214 (317) |+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+||||+|++++||+++++. +|.+ T Consensus 361 Kaarfi~lcd~f~iPlv~lvD~pGf~~G~~aE~~Giir~ga~l~~A~a~a~vP~itvi~rka~Gga~~am~~~~~~~d~~ 440 (531) T 3n6r_B 361 KAARFVRFCDAFEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSKHLRADFN 440 (531) T ss_dssp HHHHHHHHHHHTTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEE T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCCCCCCCCEE T ss_conf 99999997875288369994488878898999986999999999999718999899997986419889742666788879 Q ss_pred EEECCCCEEEECHHHHHHHHCCCCHHHHHHHHH-----C--CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf 220467401215544224421560122565542-----0--388489997899652622889844489899999999999 Q gi|254780588|r 215 YMLEHAIYSVISPEGAASILWRDSSRAAQAAIA-----M--KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317) Q Consensus 215 ~m~~~s~ysvisPEg~AsILwkd~~~a~eAAea-----l--klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317) ++|+++.++||+|||+++|+||+....+|..+. . .-++....+.++||+||+ | ..+++.| T Consensus 441 ~AwP~a~~~vm~~ega~~i~~~~e~~~~e~~~~~~~e~~~~~~~p~~aa~~~~iD~vId-P------------~dTR~~l 507 (531) T 3n6r_B 441 YAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGFVDEVIQ-P------------RSTRKRV 507 (531) T ss_dssp EECTTCEEESSCHHHHHHHHCCTTTTSTTHHHHHHHHHHHHHSSSHHHHHHTSSSEECC-G------------GGHHHHH T ss_pred EECCCCEEEECCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC-H------------HHHHHHH T ss_conf 99786658736999999987434347967899999999998549899986588671078-6------------9999999 Q ss_pred HHHHHHHHCCC Q ss_conf 99999985899 Q gi|254780588|r 288 SQFLSETSTYS 298 (317) Q Consensus 288 ~~~L~~L~~~~ 298 (317) ...|+.|.... T Consensus 508 ~~~l~~l~~~~ 518 (531) T 3n6r_B 508 ARAFASLRNKS 518 (531) T ss_dssp HHHHHTTTTCC T ss_pred HHHHHHHHCCC T ss_conf 99999864687 No 8 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Probab=100.00 E-value=1.6e-40 Score=306.98 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=183.9 Q ss_pred HHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHH Q ss_conf 763500223-7999862254--5067227533478972999988753800899984587750234420267768368999 Q gi|254780588|r 63 VSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRK 139 (317) Q Consensus 63 ~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rK 139 (317) +.+.+.+|| .++.|..++| +|+|++. .|+ +++||||+|++|+||.|||++.. ++.|.++|++++| T Consensus 282 vp~~~~~~yd~r~vi~~v~D~~~f~E~~~--~~g--~~~vtg~aRl~G~~VGviAn~p~--------~~~G~l~~~~a~K 349 (523) T 1on3_A 282 VPIDGKKGYDVRDVIAKIVDWGDYLEVKA--GYA--TNLVTAFARVNGRSVGIVANQPS--------VMSGCLDINASDK 349 (523) T ss_dssp SCSSTTCCCCTHHHHHHHSGGGCEEEEST--TSS--TTEEEEEEEETTEEEEEEEECTT--------SGGGCBCHHHHHH T ss_pred HHHHCCCCCCHHHHEEECCCCCCEEEEEC--CCC--CCHHHHHHHHCCCEEEEEECCCC--------CCCCCCCCHHHHH T ss_conf 76404678563672020455675311464--536--61887877645955899924763--------2368887067899 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC----CCCEE Q ss_conf 99999999971994899995353246778430027999999988862379988999961677775421133----20002 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVY 215 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~----~d~v~ 215 (317) +.|||++|+.|+||||+|+|||||++|.++|++|+..++|+++.++++++||+|+||+|++++||+++++. +|.++ T Consensus 350 aarfi~lcd~~~iPlv~lvD~pGf~~G~~~E~~Gi~~~gA~~~~A~a~a~vP~isvi~~k~~G~g~~am~~~~~~~d~~~ 429 (523) T 1on3_A 350 AAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVY 429 (523) T ss_dssp HHHHHHHHHHTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEE T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHCCCCCCCCCCEEE T ss_conf 99999988742877899942787677789999769999999999853679987999857744502312467778878799 Q ss_pred EECCCCEEEECHHHHHHHHCCCCHHHHHHHHHC-----------CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHH Q ss_conf 204674012155442244215601225655420-----------388489997899652622889844489899999999 Q gi|254780588|r 216 MLEHAIYSVISPEGAASILWRDSSRAAQAAIAM-----------KIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVG 284 (317) Q Consensus 216 m~~~s~ysvisPEg~AsILwkd~~~a~eAAeal-----------klTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk 284 (317) +|++++++||+|||+++|+||+..++.+.++++ .-++....+.|.||+||+ | ..++ T Consensus 430 AwP~a~~~vm~pegaa~i~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~aa~~g~iD~VId-P------------~~TR 496 (523) T 1on3_A 430 AWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID-P------------ADTR 496 (523) T ss_dssp ECTTCEEESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEECC-G------------GGHH T ss_pred ECCCCEEEECCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC-H------------HHHH T ss_conf 86755598459999999874121017679899999999999987579999986678884288-7------------9999 Q ss_pred HHHHHHHHHHHCC Q ss_conf 9999999998589 Q gi|254780588|r 285 EIISQFLSETSTY 297 (317) Q Consensus 285 ~~i~~~L~~L~~~ 297 (317) ..|.+.|+.+... T Consensus 497 ~~l~~~l~~~~~k 509 (523) T 1on3_A 497 RKIASALEMYATK 509 (523) T ss_dssp HHHHHHHHHGGGC T ss_pred HHHHHHHHHHHHC T ss_conf 9999999997517 No 9 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Probab=100.00 E-value=2.3e-39 Score=298.77 Aligned_cols=239 Identities=21% Similarity=0.278 Sum_probs=192.8 Q ss_pred HHHHHHCCHHHH-HHHHHHHCCC--CEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCC-----CHHHHHHCCCC Q ss_conf 888763500223-7999862254--506722753347897299998875380089998458775-----02344202677 Q gi|254780588|r 60 KTQVSRHPNRPH-YIDYINSLFT--HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD-----TKSRIKHNFGS 131 (317) Q Consensus 60 ~v~~aRh~~Rp~-~~dyi~~l~~--df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~-----~~~~~~~n~G~ 131 (317) ...+.+.+.+|| +++.|..++| +|+|++++ |+ +++||||||++|+||.|||+|++.. .+.++.+++|+ T Consensus 313 ~~~vp~~~~~~yD~r~vi~~i~D~~sf~E~~~~--~g--~~vvtG~aRl~G~pVGviAn~~~~~~~~p~~~~~~~~~~G~ 388 (588) T 3gf3_A 313 YSIIPMNQKRPYDIYEVIARLFDNSEFSEYKKG--YG--PEMVTGLAKVNGLLVGVIANVQGLLMNYPEYKQNSVGIGGK 388 (588) T ss_dssp HHHSCSSTTCCCCHHHHHHHHSGGGBCEESSTT--SS--TTEEEEEEEETTEEEEEEEECCSEEETCCTTSSSCEEETTE T ss_pred HHHHHCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC T ss_conf 765430467777499999864555532320355--57--76326677648947999951455344565433562003786 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC- Q ss_conf 6836899999999999971994899995353246778430027999999988862379988999961677775421133- Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA- 210 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~- 210 (317) ++|++++|+.|||++|++|+||||||+|||||++|.++|++|+..++|+++.++++++||+||||+|++++||+++++. T Consensus 389 l~~~aa~Kaarfi~lcd~f~lPlv~lvD~pGf~~G~~~E~~Gii~~gA~~~~A~a~a~vP~isvi~rka~Ggg~~am~~~ 468 (588) T 3gf3_A 389 LYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGP 468 (588) T ss_dssp ECHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSEEETTHHHHTTCT T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCC T ss_conf 67778999999998515479876999357887787688871499999999999871799979999787531456652475 Q ss_pred ---CCCEEEECC--CCEEEECHHHHHHHHCCCCH-HHHHHHH-------HC---------CCCHHHHHHCCCCCEEECCC Q ss_conf ---200022046--74012155442244215601-2256554-------20---------38848999789965262288 Q gi|254780588|r 211 ---ANFVYMLEH--AIYSVISPEGAASILWRDSS-RAAQAAI-------AM---------KIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 211 ---~d~v~m~~~--s~ysvisPEg~AsILwkd~~-~a~eAAe-------al---------klTa~DL~~lGiID~II~EP 268 (317) +|.++||++ +-++||.|||++.|+||... +++++.+ .+ ..++...-+.+.||+||+ T Consensus 469 ~~~~d~~~a~~~p~a~~~vm~~ega~~i~~~~e~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~vId-- 546 (588) T 3gf3_A 469 QGNNTNVFSIGTGACEYYVMPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMIQMYTDKSRPKYCTEKGMVDEIVD-- 546 (588) T ss_dssp TCTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTSHHHHHHTTSSSEECC-- T ss_pred CCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC-- T ss_conf 568864687678876284258999999999999975316771445899999999999998469999986578781278-- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHHHCC Q ss_conf 9844489899999999999999999858998------9999999999997248 Q gi|254780588|r 269 IGGAHRNPAQTISSVGEIISQFLSETSTYSE------TEIREHRRQKYLNIGR 315 (317) Q Consensus 269 ~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~------~~Li~~R~~Kf~~iG~ 315 (317) | ...|..|...|+.+..... ..++-++..+|..+|+ T Consensus 547 -------P----~~TR~~l~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 588 (588) T 3gf3_A 547 -------M----TEVRPYIQAFTEAAYQNPQSICPMHQMLTPRSTREFETFGK 588 (588) T ss_dssp -------G----GGHHHHHHHHHHHHTTSCSCCCCGGGCSHHHHHHHHHHHC- T ss_pred -------H----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCC T ss_conf -------3----99999999999999858766687546788431100024469 No 10 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Probab=100.00 E-value=8.4e-38 Score=287.74 Aligned_cols=221 Identities=19% Similarity=0.238 Sum_probs=182.9 Q ss_pred HHHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCH------HHHHHCCCCC Q ss_conf 8763500223-79998622545--0672275334789729999887538008999845877502------3442026776 Q gi|254780588|r 62 QVSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTK------SRIKHNFGSP 132 (317) Q Consensus 62 ~~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~------~~~~~n~G~~ 132 (317) .+.+.+.+|| +++.|..++|+ |+|+..+ |+ +++||||||++|+||+|||+|++.... .++.+++|.+ T Consensus 312 ~vp~d~~~~yd~r~vi~~i~D~~~f~E~~~~--~g--~~iVtG~aRl~G~pVGVIAn~~~~~~~~~~~~a~~~~~~gG~l 387 (587) T 1pix_A 312 MVPLNDKRAYDIYNVIARLFDNSELHEYKKG--YG--PEMVTGLAKVNGLLVGVVANVQGLLMNYPEYKAAGSVGIGGKL 387 (587) T ss_dssp HSCSSTTSCCCHHHHHHTTSGGGBCEESSTT--SS--TTEEEEEEEETTEEEEEEEECCSEETTCCTTSCTTCCEETTEE T ss_pred CCCCCCCCCCCCEECCCCCCCCHHHHCCCCC--CC--CCEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 1444555676630000002332011013566--78--8537899986796799995255434455432223333568966 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC-- Q ss_conf 836899999999999971994899995353246778430027999999988862379988999961677775421133-- Q gi|254780588|r 133 RPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA-- 210 (317) Q Consensus 133 ~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~-- 210 (317) +|++++|+.|||++|++|+||||+|+|||||++|.++|+.|+..++|+++.++++++||+||||+|++++||+++++. T Consensus 388 ~~~sa~Kaarfi~lcd~~~iPlv~lvD~pGf~~G~~~E~~Giir~gA~l~~A~a~a~vP~itvi~rkayGga~~am~~~~ 467 (587) T 1pix_A 388 YRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQ 467 (587) T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEETTHHHHTTCTT T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCC T ss_conf 87899999999998764299668971588878876999988999999999888737999799997985316778734765 Q ss_pred --CCCEE--EECCCCEEEECHHHHHHHHCCCCHHH-HHHH-------HHC---------CCCHHHHHHCCCCCEEECCCC Q ss_conf --20002--20467401215544224421560122-5655-------420---------388489997899652622889 Q gi|254780588|r 211 --ANFVY--MLEHAIYSVISPEGAASILWRDSSRA-AQAA-------IAM---------KIIATDLQDLSIIDGIIPEPI 269 (317) Q Consensus 211 --~d~v~--m~~~s~ysvisPEg~AsILwkd~~~a-~eAA-------eal---------klTa~DL~~lGiID~II~EP~ 269 (317) +|.++ .|+.+.++|++|||++.|+|++...+ ++++ +.+ ..++....+.|.||+||+ | T Consensus 468 ~~~~~~~~~a~p~a~i~vm~~e~av~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~g~vD~iId-P- 545 (587) T 1pix_A 468 GNDTNAFSIGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYTKSRPKVCAELGLVDEIVD-M- 545 (587) T ss_dssp CTTTEEEEEECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTSHHHHHHHTSSSEECC-T- T ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEC-H- T ss_conf 68861377218876261579999999998887652214452445899999999999987369999997288681288-3- Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCH Q ss_conf 844489899999999999999999858998 Q gi|254780588|r 270 GGAHRNPAQTISSVGEIISQFLSETSTYSE 299 (317) Q Consensus 270 GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~ 299 (317) ...|+.|...|+.+.+.+. T Consensus 546 -----------~~TR~~l~~~l~~~~~~~~ 564 (587) T 1pix_A 546 -----------NKIRGYVEAFTEAAYQNPE 564 (587) T ss_dssp -----------TTHHHHHHHHHHHHTTSCS T ss_pred -----------HHHHHHHHHHHHHHHHCCC T ss_conf -----------9999999999999985866 No 11 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=100.00 E-value=7.6e-37 Score=280.94 Aligned_cols=200 Identities=18% Similarity=0.205 Sum_probs=165.9 Q ss_pred HHHCCHHHH-HHHHHHHCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCC-------------CHHHHH Q ss_conf 763500223-79998622545--06722753347897299998875380089998458775-------------023442 Q gi|254780588|r 63 VSRHPNRPH-YIDYINSLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD-------------TKSRIK 126 (317) Q Consensus 63 ~aRh~~Rp~-~~dyi~~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~-------------~~~~~~ 126 (317) +.....+|+ ..+++..+||+ |+|++++ |+ +++|||+||++|+||.|||++++.. ....+. T Consensus 357 ~~~~~~~~~d~~~~i~~i~D~gsf~E~~~~--~a--~~vVtG~ARLgG~pVGVIAne~~~~~~~~padpa~~~s~~~~~~ 432 (760) T 3ff6_A 357 MLAGRPHPTLKGTWQSGFFDHGSFKEIMAP--WA--QTVVTGRARLGGIPVGVIAVETRTVEVAVPADPANLDSEAKIIQ 432 (760) T ss_dssp HHHCEECTTSSSCEECCSSCTTCCEEESTT--SS--TTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTCSSCCCEEEE T ss_pred CCCCCCCCCHHHHHHHEEEECCCCEECCCC--CC--CCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 124677663024331001115740101146--64--76588999999988999975675344556778555312566665 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC Q ss_conf 02677683689999999999997199489999535324677843002799999998886237998899996167777542 Q gi|254780588|r 127 HNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM 206 (317) Q Consensus 127 ~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~ 206 (317) +++|++.|+|++|+.|+|++|++|+||||+|+|||||++|.++|+.|+..++|+.+.++++++||+|+||+|+|++||+. T Consensus 433 ~~GGv~~pdsa~KaArfI~lcd~~~lPLv~LvD~pGF~~G~~~E~~Gilk~GA~iv~Ala~~~vP~itvI~~~g~~~GGa 512 (760) T 3ff6_A 433 QAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIPPYAELRGGS 512 (760) T ss_dssp ECTTCBCHHHHHHHHHHHHHHHHTTCCEEEECCCCCBCCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTCEEEHHH T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCCC T ss_conf 31782557999999999998454699859995488766668999848999999999999708998799995873533644 Q ss_pred CCCC-------CCCEEEECCCCEEEECHHHHHHHHCCCCHHHHHHH---------------------------------- Q ss_conf 1133-------20002204674012155442244215601225655---------------------------------- Q gi|254780588|r 207 GIAA-------ANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAA---------------------------------- 245 (317) Q Consensus 207 a~~~-------~d~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAA---------------------------------- 245 (317) .+.+ .+.++++++|.++|++|||++.|++|+...++..+ T Consensus 513 ~vv~~~~~~~~~~~vyAwp~A~~gVl~pegav~I~fr~~~~~~~~~r~d~~~~~l~~~l~~~~~~~~~~~~~~~~~~~re 592 (760) T 3ff6_A 513 WVVIDATINPLCIEMYADKESRGGVLEPEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLGEPDLSDKDRKDLEGRLKARE 592 (760) T ss_dssp HHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCGGGGHHHHHHTSCCCCHHHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCCEEEECCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 46416655776655888662006347899987867501544433310005677888874144433567888999999999 Q ss_pred --------------HHCCCCHHHHHHCCCCCEEEC Q ss_conf --------------420388489997899652622 Q gi|254780588|r 246 --------------IAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 246 --------------ealklTa~DL~~lGiID~II~ 266 (317) +.+.-|+..+.+.|+||+||+ T Consensus 593 ~~l~~~y~~va~~fadlhd~~~raa~~G~Id~vI~ 627 (760) T 3ff6_A 593 DLLLPIYHQVAVQFADFHDTPGRMLEKGVISDILE 627 (760) T ss_dssp HHHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEEEC T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCC T ss_conf 88778889999999985168999996581773058 No 12 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=100.00 E-value=6.4e-35 Score=267.27 Aligned_cols=212 Identities=16% Similarity=0.195 Sum_probs=166.9 Q ss_pred HHHH-HHHHHH----------HCCCC--EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCC-------------CC Q ss_conf 0223-799986----------22545--0672275334789729999887538008999845877-------------50 Q gi|254780588|r 68 NRPH-YIDYIN----------SLFTH--FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGS-------------DT 121 (317) Q Consensus 68 ~Rp~-~~dyi~----------~l~~d--f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~-------------~~ 121 (317) .+|| .++.|. .+||+ |+|++++ |+ +++||||||++|+||+|||+|... +. T Consensus 363 ~~pyD~r~vI~~~~~~~~~~~~i~D~~sF~E~~~~--~a--~~vVtG~ARLgG~pVGVIAn~~~~~~g~~~aDpa~~~s~ 438 (758) T 3k8x_A 363 DETYDVRWMIEGRETESGFEYGLFDKGSFFETLSG--WA--KGVVVGRARLGGIPLGVIGVETRTVENLIPADPANPNSA 438 (758) T ss_dssp SSCCCHHHHHHCEEETTEEECCSSCTTCCEEESTT--SC--TTEEEEEEEETTEEEEEEEECCSCEEEEECCCTTSTTCC T ss_pred CCCCCCEEEECCCCCCCCCCEEEEECCCEEECCCC--CC--CCEEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCCCH T ss_conf 88986405640567765444057726642422466--65--754899999999789999756652335456874454203 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-HHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 23442026776836899999999-99997199489999535324677843002799999998886237998899996167 Q gi|254780588|r 122 KSRIKHNFGSPRPEGYRKAVRLM-EMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 122 ~~~~~~n~G~~~p~g~rKa~r~~-~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) .....+++|++.|+++.|+.|++ ++|++|+||||+|+|||||++|.++|++|+..++|+++.++++++||+|+||+|.| T Consensus 439 ~~~~~~aGgv~~p~sa~K~ArfI~~lcd~~~LPLv~LvDtpGF~~G~~aE~~Giik~GA~iv~Ala~a~vP~itvI~~~g 518 (758) T 3k8x_A 439 ETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTG 518 (758) T ss_dssp CEEEEECTTEECHHHHHHHHHHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEECTTC T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 34443057856706899999999999861288669997188877678999833999999999999758998799994774 Q ss_pred -CCCCCCCCCCC----C--CEEEECCCCEEEECHHHHHHHHCCCCHHHHH--------------------HHH------- Q ss_conf -77754211332----0--0022046740121554422442156012256--------------------554------- Q gi|254780588|r 201 -GSGGAMGIAAA----N--FVYMLEHAIYSVISPEGAASILWRDSSRAAQ--------------------AAI------- 246 (317) Q Consensus 201 -~sGGA~a~~~~----d--~v~m~~~s~ysvisPEg~AsILwkd~~~a~e--------------------AAe------- 246 (317) ..|||++...+ + .+++|++|.++|++|||++.|+||+....+. ||+ T Consensus 519 ~~~GGayvv~~~~~~~~~~~vyAwp~A~~gVm~pEgav~I~fR~e~~~~~~~r~d~~~~el~~~l~~~~~aae~~~~~~~ 598 (758) T 3k8x_A 519 ELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGMVGIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISK 598 (758) T ss_dssp EEETHHHHTTCGGGSTTTEEEEEETTCEEESSCHHHHHHHHSCHHHHHHHHHHHCSCCCCC------------------- T ss_pred EECCHHHHHCCCCCCCCCCEEEECCCCEEEECCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 45121254237654776553778672038817899998978164110035221699999999986394326566888999 Q ss_pred ---------------------HCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf ---------------------203884899978996526228898444898999999999999 Q gi|254780588|r 247 ---------------------AMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIIS 288 (317) Q Consensus 247 ---------------------alklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i~ 288 (317) .|.-|+..+++.|+||+||+ |- ....-++..|+.-|. T Consensus 599 ~~~~re~~l~~~y~~va~~fa~lhd~~~rm~a~G~I~~vi~-~~----~tR~~~~~~l~r~l~ 656 (758) T 3k8x_A 599 QLADRERELLPIYGQISLQFADLHDRSSRMVAKGVISKELE-WT----EARRFFFWRLRRRLN 656 (758) T ss_dssp ---------HHHHHHHHHHHHHTTSBHHHHHHHTCSSEEEC-GG----GHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCC-HH----HHHHHHHHHHHHHHH T ss_conf 99999998778899999999983085877875283773328-78----879999999999986 No 13 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Probab=99.95 E-value=1.8e-28 Score=221.47 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=173.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECCCCCCCCC----CEEEEEEEEEC Q ss_conf 69999999999999999974269999988876350022379998622545--0672275334789----72999988753 Q gi|254780588|r 33 FSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAGDRLFGDD----PAMQIGLARFH 106 (317) Q Consensus 33 ~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~GDr~~~dD----~aii~G~a~i~ 106 (317) ..+++.+++++++++.++.+....++++.. + ..|.+.++.|+.|+|+ |.|++......+| -++|+|+|+|+ T Consensus 27 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--rGkltaReRI~~L~D~gSF~E~~~l~~~~~~~~~~~~vV~G~G~I~ 103 (587) T 1pix_A 27 NEEQLKKIEEEIHQLIKEAQEAGKADADVN-K--RGELTALQRIEKLVEPGSWRPLNTLFNPQGNKNGSVAIVKGLGRVN 103 (587) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCHHHHH-H--TTCCCHHHHHHHHSCTTCCEEESTTCCTTCCTTSCCSEEEEEEEET T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--HCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEEC T ss_conf 799999999999999999986488578798-6--0899999999985499963023144530368899975999999999 Q ss_pred CCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHH---HHHHHHHHH Q ss_conf 80089998458775023442026776836899999999999971994899995353246778430027---999999988 Q gi|254780588|r 107 GQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQ---GEAIARATE 183 (317) Q Consensus 107 g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~---~~aia~~l~ 183 (317) |++|+|++||.. ..+|+++|.+++|..|++++|.++++|+|+|+|++||.++.+.+..++ +..+..++. T Consensus 104 Gr~v~v~a~D~t--------v~gGs~g~~~~~K~~r~~~lA~~~~lP~I~l~ds~Garl~e~~~~~~~~~~~g~~~~~~~ 175 (587) T 1pix_A 104 GKWCVVVASDNK--------KLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNA 175 (587) T ss_dssp TEEEEEEEECTT--------TTTTEECTTHHHHHHHHHHHHHHHTCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHH T ss_pred CEEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999998682--------115087878989999999999982999899955788766651344100545649999999 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCC---CCHHHHHHHHH-------CCCCHH Q ss_conf 86237998899996167777542113320002204674012155442244215---60122565542-------038848 Q gi|254780588|r 184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWR---DSSRAAQAAIA-------MKIIAT 253 (317) Q Consensus 184 ~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwk---d~~~a~eAAea-------lklTa~ 253 (317) .++...||+|++|+|++++|||+..+.+|.++|.++|...+.+|.--...--+ +...+.+...+ --|-.. T Consensus 176 ~~s~~~vP~Isvv~G~~~gGgA~~~~s~~~ii~~~~s~i~laGP~vi~~~~~~~~~~~~~~~~v~~~~g~~~~~e~LGGa 255 (587) T 1pix_A 176 ELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDRTGKTEPPGAV 255 (587) T ss_dssp HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHTTCCCCCSSBH T ss_pred HHHCCCCCEEEECCCCCCCCCCHHHHHCEEEEEECCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCH T ss_conf 98469985675035786764201100021688724437995070564203443322323442011000443441025624 Q ss_pred HH--HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99--97899652622889844489899999999999 Q gi|254780588|r 254 DL--QDLSIIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317) Q Consensus 254 DL--~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317) ++ .+.|++|.+.+ |-.+.+..++..+ T Consensus 256 ~iH~~~sGv~d~va~--------de~~a~~~ir~~l 283 (587) T 1pix_A 256 DIHYTETGFMREVYA--------SEEGVLEGIKKYV 283 (587) T ss_dssp HHHTTTSCCSCEEES--------SHHHHHHHHHHHH T ss_pred HHHHHCCCCCCEEEC--------CHHHHHHHHHHHH T ss_conf 343310487641224--------6799999999998 No 14 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Probab=99.90 E-value=4.7e-21 Score=168.91 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=164.8 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC-----CCCCCC------CCEE Q ss_conf 769999999999999999974269999988876350022379998622545--067227-----533478------9729 Q gi|254780588|r 32 DFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG-----DRLFGD------DPAM 98 (317) Q Consensus 32 ~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G-----Dr~~~d------D~ai 98 (317) ....++++|+++.+.. .+...-++|+.-+..+|...++.|+.|+|+ |+|+.. +..++. .-++ T Consensus 11 ~~~~~~~~l~~~~~~~-----~~~gg~~~v~r~~~~GkltaReRI~~LlD~gSF~E~g~~~~~~~~~~~~~~~~~~~dgv 85 (523) T 1on3_A 11 TMEGRVEQLAEQRQVI-----EAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGV 85 (523) T ss_dssp SHHHHHHHHHHHHHHH-----HTTTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEECTTCCCCCCTTTTTTCCCGGGGE T ss_pred HHHHHHHHHHHHHHHH-----HHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECHHHHCCCCCCCCCCCCCCCCCEE T ss_conf 9999999999999999-----86589999999997399989999999639997557401227576521234564788749 Q ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHH Q ss_conf 99988753800899984587750234420267768368999999999999719948999953532467784300279999 Q gi|254780588|r 99 QIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAI 178 (317) Q Consensus 99 i~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~ai 178 (317) |+|+|+|+|++|+|++++.. ..+|.+.+...+|..|++++|.+.++|+|.|+|+.|+....+.+.-.+...+ T Consensus 86 v~G~G~I~Gr~v~v~a~D~t--------v~gGs~g~~~~~K~~~~~~~A~~~~~P~V~l~dsgG~rl~e~~~~l~~~~~~ 157 (523) T 1on3_A 86 VTGRGTILGRPVHAASQDFT--------VMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKM 157 (523) T ss_dssp EEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHHH T ss_pred EEEEEEECCEEEEEEEECCC--------EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHCCHH T ss_conf 99999999999999997586--------7363778888778988999998668988999806898665442203212599 Q ss_pred HHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHC Q ss_conf 99988862379988999961677775421133200022046740121554422442156012256554203884899978 Q gi|254780588|r 179 ARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDL 258 (317) Q Consensus 179 a~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~l 258 (317) ..++..++.. ||+|++|+|.+.+|+|+.++++|.++|.++|...+-+|.--....-.+.+ ++.+.=....+... T Consensus 158 ~~~~~~~sg~-vP~Isvv~G~~~gG~a~~~~~~d~vIm~~~a~l~l~GP~vV~~~~ge~v~-----~eelGGa~~h~~~s 231 (523) T 1on3_A 158 FFANVKLSGV-VPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVT-----ADELGGAEAHMAIS 231 (523) T ss_dssp HHHHHHHTTT-SCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCHHHHHHHHCCCCC-----HHHHHSHHHHHHTT T ss_pred HHHHHHHCCC-CCEEEEEECCCCCCCEECCCCCCEEEEECCEEEEECCCHHHHHHCCCCCC-----HHHCCCHHHHHHHC T ss_conf 9999985077-97799970788634020012383899815604884280877875078679-----68802587887612 Q ss_pred CCCCEEEC Q ss_conf 99652622 Q gi|254780588|r 259 SIIDGIIP 266 (317) Q Consensus 259 GiID~II~ 266 (317) |++|.+.+ T Consensus 232 G~~d~v~~ 239 (523) T 1on3_A 232 GNIHFVAE 239 (523) T ss_dssp CCCSEEES T ss_pred CCCCEEEC T ss_conf 76633413 No 15 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Probab=99.90 E-value=3.2e-22 Score=177.18 Aligned_cols=232 Identities=16% Similarity=0.231 Sum_probs=154.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC-----CCCCCCCCEEEEEEEEECC Q ss_conf 999999999999999974269999988876350022379998622545--067227-----5334789729999887538 Q gi|254780588|r 35 EEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG-----DRLFGDDPAMQIGLARFHG 107 (317) Q Consensus 35 ~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G-----Dr~~~dD~aii~G~a~i~g 107 (317) +++.++.+++.+..++....- .+.++..+...|...++.|+.|+|+ |+|++. +..+..| ++|+|+|+|+| T Consensus 29 ~~~~~~~~~l~~~~~~~~~~g--~~~~~k~h~rGkltaRERI~~LlD~gSF~E~~~l~~~~~~~~~~~-gvV~G~G~I~G 105 (588) T 3gf3_A 29 QEIKAVESDIHESIKKALDAG--ITSEEKLNERGQLSAMQRINALIDPGTWCPLNSLFNPENNKFGTT-NIVNGLGRVDG 105 (588) T ss_dssp HHHHHHHHHHHHHHHHHHHCS--SSCHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCTTCCTTSSC-SEEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCC-CEEEEEEEECC T ss_conf 999999999999999987367--767998997199999999999658997501266672046888998-68999999999 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC----HHHHHHHHHHHH Q ss_conf 0089998458775023442026776836899999999999971994899995353246778430----027999999988 Q gi|254780588|r 108 QPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA----RGQGEAIARATE 183 (317) Q Consensus 108 ~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~----~G~~~aia~~l~ 183 (317) ++|+|++||-. ..+|++++.+.+|.+|++++|.++++|+|+|+|++|+..+.+.+. .+ ...+..+.. T Consensus 106 r~V~V~a~D~t--------v~gGS~g~~~~~K~~r~~e~A~~~~lP~V~l~dsgGaRl~e~~~~~~~~~~-~g~~~~~~~ 176 (588) T 3gf3_A 106 KWVYIVASDNK--------KMAGAWVPGQAENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRG-GGTPFFRNS 176 (588) T ss_dssp EEEEEEEECTT--------SGGGCBCTTHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGHHHHSSSTTS-TTHHHHHHH T ss_pred EEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHH T ss_conf 99999999782--------115697878989999999999985989799944787666654223530444-438999999 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCC---CCHHHHHHH------HHC---CCC Q ss_conf 86237998899996167777542113320002204674012155442244215---601225655------420---388 Q gi|254780588|r 184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWR---DSSRAAQAA------IAM---KII 251 (317) Q Consensus 184 ~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwk---d~~~a~eAA------eal---klT 251 (317) +++...||+|++|+|.+.+|||+..+.+|.++|.+++...+..|.--..-.-+ +..-.++.. +.+ .+- T Consensus 177 ~~s~~~iP~Isvv~G~~~gG~a~~a~s~~~ii~~~~a~i~l~GP~vv~~~~g~~~~~~~~g~~~~~~~~~~e~l~~~~lg 256 (588) T 3gf3_A 177 ELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKGYIDDEAAEQIIAAQIENSKLKVPAPG 256 (588) T ss_dssp HHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC---------------CHHHHHHHHHHHHTTCCCTT T ss_pred HHHCCCCCEEEEECCCCCCCCCEEECCCCCCEEECCEEEEECCCHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCC T ss_conf 98569997799945776666530120465323524347997282353035774334311245554300222210234577 Q ss_pred HHHH--HHCCCCCEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 4899--9789965262288984448989999999999 Q gi|254780588|r 252 ATDL--QDLSIIDGIIPEPIGGAHRNPAQTISSVGEI 286 (317) Q Consensus 252 a~DL--~~lGiID~II~EP~GGAHrd~~~~~~~lk~~ 286 (317) ..++ .+.|++|.+.+ |-......+++. T Consensus 257 ga~~h~~~sGv~d~va~--------de~~a~~~~r~~ 285 (588) T 3gf3_A 257 SVPIHYDETGFFREVYQ--------NDLGVIDGIKKY 285 (588) T ss_dssp BHHHHTTTSCCSCEEES--------SHHHHHHHHHHH T ss_pred CHHHHHHCCCCCCCCCC--------CHHHHHHHHHHH T ss_conf 43544202465410247--------879999988889 No 16 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Probab=99.88 E-value=4.8e-20 Score=161.76 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=166.3 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCCC--C------CCCEEEE Q ss_conf 9999999999999999974269999988876350022379998622545--067227---5334--7------8972999 Q gi|254780588|r 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRLF--G------DDPAMQI 100 (317) Q Consensus 34 ~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~~--~------dD~aii~ 100 (317) ..+|.+|+++.+... ....-++|...+..+|...++.|+.|+|+ |+|+.. .+.+ . -+-++|+ T Consensus 26 ~~~l~~l~~r~~~~~-----~~gg~~~v~~~~~~GkltaRERI~~LlD~gSF~E~g~la~~~~~~~~~~~~~~~~dgvV~ 100 (548) T 2bzr_A 26 AGKLAELHKRREESL-----HPVGEDAVEKVHAKGKLTARERIYALLDEDSFVELDALAKHRSTNFNLGEKRPLGDGVVT 100 (548) T ss_dssp HHHHHHHHHHHHHHT-----STTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCCCCCSTTGGGCCCTTTTEEE T ss_pred HHHHHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECHHHCCCCCCCCCCCCCCCCCCEEEE T ss_conf 999999999999998-----627999999999739999999999860899864841010756666464445688875999 Q ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH Q ss_conf 98875380089998458775023442026776836899999999999971994899995353246778430027999999 Q gi|254780588|r 101 GLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 (317) Q Consensus 101 G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~ 180 (317) |+|+|+|++|+|+++|.. ..+|.+.+...+|..|++++|.+.++|+|+|+|+.|+....+.....+...++. T Consensus 101 G~G~I~Gr~vvv~a~D~t--------v~gGS~g~~~~~Ki~r~~elA~~~~lP~V~l~dSgGarlqeg~~~l~~~~~~~~ 172 (548) T 2bzr_A 101 GYGTIDGRDVCIFSQDAT--------VFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGARIQEGVVSLGLYSRIFR 172 (548) T ss_dssp EEEEETTEEEEEEEECTT--------SGGGCCCHHHHHHHHHHHHHHHHHTCCEEEEECCCSCCGGGTTHHHHHHHHHHH T ss_pred EEEEECCEEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECCCCHHHHHH T ss_conf 999999999999998787--------706684788999999999999971998799961577556654001432058999 Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCC Q ss_conf 9888623799889999616777754211332000220-467401215544224421560122565542038848999789 Q gi|254780588|r 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLS 259 (317) Q Consensus 181 ~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lG 259 (317) +. ..+...||+|++|+|.+++|||+.++++|.++|. +.|...+.+|.--..-.-.+.+ ++.+.=....+...| T Consensus 173 ~~-~~~s~~iP~Isvv~Gp~~gG~a~~~a~~d~vIm~~~~a~i~~aGP~vv~~atge~~~-----~eelGga~~h~~~sG 246 (548) T 2bzr_A 173 NN-ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEVT-----MEELGGAHTHMAKSG 246 (548) T ss_dssp HH-HHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCCC-----HHHHHBHHHHHHTSS T ss_pred HH-HHHCCCCCEEEEECCCCCCCCEEEHHHCCEEEEEECCCEEEECCHHHHHHHHCCCCC-----HHHHCCHHEEEECCC T ss_conf 99-997589977999627876441322333864899714633650478899997478768-----566067102640466 Q ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 965262288984448989999999999 Q gi|254780588|r 260 IIDGIIPEPIGGAHRNPAQTISSVGEI 286 (317) Q Consensus 260 iID~II~EP~GGAHrd~~~~~~~lk~~ 286 (317) ++|.+.+ |-.+.++.++.. T Consensus 247 ~~d~~~~--------de~~a~~~~r~~ 265 (548) T 2bzr_A 247 TAHYAAS--------GEQDAFDYVREL 265 (548) T ss_dssp CCSEEES--------SHHHHHHHHHHH T ss_pred CCCCCCC--------CHHHHHHHHHHH T ss_conf 5568779--------999999999999 No 17 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Probab=99.87 E-value=1.5e-19 Score=158.15 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=160.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCC--CC-C-----CCE Q ss_conf 7769999999999999999974269999988876350022379998622545--067227---533--47-8-----972 Q gi|254780588|r 31 EDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRL--FG-D-----DPA 97 (317) Q Consensus 31 ~~~~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~--~~-d-----D~a 97 (317) ....+++++|+++..... +..--++|..-+..+|.+.++.|+.|+|+ |+|+.- .+. +. + ..+ T Consensus 13 m~~~~~i~el~~r~~~~~-----~~Gg~~~v~k~~~~GkltaRERi~~LlD~gSF~E~g~l~~~~~~~~~~~~~~~~~dg 87 (527) T 1vrg_A 13 MSLRDKIEELKKIEKEIE-----QGGGPEKVEKQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDKVKLPRDG 87 (527) T ss_dssp CCHHHHHHHHHHHHHHHH-----TTTCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEECTTCCCCCCGGGGGGCCCGGGG T ss_pred CCHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCCCCE T ss_conf 668999999999999999-----748999999999729999999999965799874775431547755453345588871 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHH Q ss_conf 99998875380089998458775023442026776836899999999999971994899995353246778430027999 Q gi|254780588|r 98 MQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177 (317) Q Consensus 98 ii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~a 177 (317) +|+|+|+|+|++|+|++++.. ..+|.+.+...+|..|.+++|.+.++|+|.|+|+.|+....+.+--.+... T Consensus 88 vV~G~G~I~Gr~v~v~a~D~t--------v~gGS~g~~~~~k~~~~~~~A~~~~lPlV~l~~sgGar~~eg~~~l~~~g~ 159 (527) T 1vrg_A 88 VITGVGEINGRKVAVFSQDFT--------VMGGSLGEMHAKKIVKLLDLALKMGIPVIGINDSGGARIQEGVDALAGYGE 159 (527) T ss_dssp EEEEEEEETTEEEEEEEECTT--------TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSBCGGGTHHHHHHHHH T ss_pred EEEEEEEECCEEEEEEEECCC--------EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHH T ss_conf 899999999999999998787--------704077889999999999999965998899855788776555421244069 Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHH- Q ss_conf 9999888623799889999616777754211332000220-46740121554422442156012256554203884899- Q gi|254780588|r 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDL- 255 (317) Q Consensus 178 ia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL- 255 (317) +......++ ..||+|++|+|.+.+|+|+.++++|.++|. +.|...+.+|--- +++-.-.+++.+| T Consensus 160 i~~~~~~~s-g~vP~Isvv~Gp~~GG~A~~~~~~d~vim~~~~a~i~~aGP~vV------------~~~tGe~v~~eelG 226 (527) T 1vrg_A 160 IFLRNTLAS-GVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFITGPNVI------------KAVTGEEISQEDLG 226 (527) T ss_dssp HHHHHHHHT-TTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSSCHHHH------------HHHHCCCCCHHHHH T ss_pred HHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHCCEEEEECCCCEEEECCHHHH------------HHHCCCCCCHHHCC T ss_conf 999999966-99988999417876078777886885899617745871477889------------88607625856557 Q ss_pred ------HHCCCCCEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf ------97899652622889844489899999999999 Q gi|254780588|r 256 ------QDLSIIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317) Q Consensus 256 ------~~lGiID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317) ...|++|.+.+ +-...+..+++.+ T Consensus 227 G~~~h~~~sG~~~~~~~--------~e~~a~~~~r~~l 256 (527) T 1vrg_A 227 GAMVHNQKSGNAHFLAD--------NDEKAMSLVRTLL 256 (527) T ss_dssp BHHHHHHTSCCCSEEES--------SHHHHHHHHHHHH T ss_pred CCEEEEECCCCCCEEEC--------CHHHHHHHHHHHH T ss_conf 60476422555305421--------1477999999999 No 18 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Probab=99.87 E-value=9.7e-20 Score=159.56 Aligned_cols=227 Identities=15% Similarity=0.200 Sum_probs=165.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECCCCCCC-----------CCCEEEE Q ss_conf 9999999999999999974269999988876350022379998622545--06722753347-----------8972999 Q gi|254780588|r 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAGDRLFG-----------DDPAMQI 100 (317) Q Consensus 34 ~~ei~~Le~k~~~~~~~iy~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~GDr~~~-----------dD~aii~ 100 (317) ..++.+|+++.... .....-+++...+..+|...++.|+.|||+ |+|+...-.+. -..++|+ T Consensus 15 ~~~l~el~~r~~~~-----~~~g~~~~~~~~~~~gkltaReRi~~LlD~gSF~E~g~~a~~~~~~~~~~~~~~~~dgvV~ 89 (530) T 3iav_A 15 AGKLADLRRRIEEA-----THAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVT 89 (530) T ss_dssp HHHHHHHHHHHHHH-----TTCSCHHHHHHHHHTTCCCHHHHHHHHSCTTCCEEESTTCCCCCCGGGGGGCCCTTTTEEE T ss_pred HHHHHHHHHHHHHH-----HHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECHHHHCCCCCCCCCCCCCCCCCEEEE T ss_conf 99999999999999-----8718999999999759999999999962899875875332757643220016688975999 Q ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH Q ss_conf 98875380089998458775023442026776836899999999999971994899995353246778430027999999 Q gi|254780588|r 101 GLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 (317) Q Consensus 101 G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~ 180 (317) |+|+|+|++|+|++++.. ..+|.+.+.+.+|..|++++|.+.++|+|.|+|+.|+....+....++...+.+ T Consensus 90 G~G~I~Gr~v~v~a~Dft--------v~gGS~g~~~~~K~~r~~~~A~~~~lP~V~l~~sgGar~~e~~~~~~~~~~~~~ 161 (530) T 3iav_A 90 GYGTVDGRPVAVFSQDFT--------VFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFR 161 (530) T ss_dssp EEEEETTEEEEEEEECTT--------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHHHHHHHHH T ss_pred EEEEECCEEEEEEEECCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHH T ss_conf 999999999999998686--------424087888989998999999865999899952688776656444555307999 Q ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEC-CCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCC Q ss_conf 98886237998899996167777542113320002204-67401215544224421560122565542038848999789 Q gi|254780588|r 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLE-HAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLS 259 (317) Q Consensus 181 ~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~-~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lG 259 (317) .+..++ ..||+|++|+|.+.+|||+.++++|.++|.+ .|.+.+.+|.-.-.-.-.+- ..+.+.=........| T Consensus 162 ~~~~~s-~~iP~isvv~G~~~gG~A~~~~~~d~~im~~~~a~i~~aGP~vV~~atge~~-----~~eelGg~~~h~~~sG 235 (530) T 3iav_A 162 RNTHAS-GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDV-----GFEELGGARTHNSTSG 235 (530) T ss_dssp HHHHTT-TTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCHHHHHHHHCCCC-----CHHHHHBHHHHHHTSC T ss_pred HHHHHC-CCCCEEEEEECCCCCCHHHHHHHCCEEEEECCCCEEEECCHHHHHHHCCCCC-----CHHHCCCHHHEEECCC T ss_conf 999865-8998899962687624544045377169851675087237488897527888-----8122155122121367 Q ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf 9652622889844489899999999999 Q gi|254780588|r 260 IIDGIIPEPIGGAHRNPAQTISSVGEII 287 (317) Q Consensus 260 iID~II~EP~GGAHrd~~~~~~~lk~~i 287 (317) ++|-+.+ |-...+..++..+ T Consensus 236 ~~d~~~~--------de~~a~~~~r~~l 255 (530) T 3iav_A 236 VAHHMAG--------DEKDAVEYVKQLL 255 (530) T ss_dssp CCSEEES--------SHHHHHHHHHHHH T ss_pred CCCCCCC--------CHHHHHHHHHHHH T ss_conf 4320157--------6788999999999 No 19 >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114} Probab=99.86 E-value=2.6e-19 Score=156.50 Aligned_cols=203 Identities=18% Similarity=0.238 Sum_probs=150.0 Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCC---------CCCCCEEEEEEEEECCCEEEEEEECCCC Q ss_conf 69999988876350022379998622545--067227---533---------4789729999887538008999845877 Q gi|254780588|r 54 KLTPWQKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRL---------FGDDPAMQIGLARFHGQPVAIIGQEKGS 119 (317) Q Consensus 54 ~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~---------~~dD~aii~G~a~i~g~~v~vig~~kG~ 119 (317) +...-++|...+..+|...++.|+.|||+ |.|+.- .+. ...| ++|+|+|+|+|++|+|++++.. T Consensus 38 ~~Gg~~~v~r~h~~GkltaRERI~~LlD~gSF~E~g~l~~~~~~d~~~~~~~~~~d-gvV~G~G~I~Gr~v~v~a~Dft- 115 (531) T 3n6r_B 38 LGGGQKRIDAQHGRGKLTARERVDLLLDEGSFEEFDMFVTHRCTDFNMQDQKPAGD-GVVTGWGTINGRVVYVFSQDFT- 115 (531) T ss_dssp TTTCHHHHHHHHHTTCCCHHHHHHHHSSSSCCEEECTTCCCCCCGGGGGGCCCTTT-TEEEEEEEETTEEEEEEEECTT- T ss_pred HCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEECHHHHCCCCCCCCCCCCCCCCC-EEEEEEEEECCEEEEEEEECCC- T ss_conf 73899999999975999999999997189987035134354666655334677897-3999999999999999998687- Q ss_pred CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 50234420267768368999999999999719948999953532467784300279999999888623799889999616 Q gi|254780588|r 120 DTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 120 ~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) ..+|.+.+...+|..|++++|.+.++|+|.|+|+.|+....+.+...+...+.+... ..+..||+||+|+|. T Consensus 116 -------v~GGS~g~~~~~K~~ra~e~A~~~~lPlV~l~dsgGarl~eg~~~l~~~~~~~~~~~-~~s~~iP~Isvv~Gp 187 (531) T 3n6r_B 116 -------VLGGSVSETHSKKICKIMDMAMQNGAPVIGINDSGGARIQEGVDSLAGYGEVFQRNI-MASGVVPQISMIMGP 187 (531) T ss_dssp -------SGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCGGGTHHHHHHHHHHHHHHH-HTTTTSCEEEEECSC T ss_pred -------EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCEEEEEECC T ss_conf -------633078877889999999999984998799614788775545222344248999999-866899889998168 Q ss_pred CCCCCCCCCCCCCCEEEECC-CCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHH-------HHHCCCCCEEECCCCCC Q ss_conf 77775421133200022046-74012155442244215601225655420388489-------99789965262288984 Q gi|254780588|r 200 GGSGGAMGIAAANFVYMLEH-AIYSVISPEGAASILWRDSSRAAQAAIAMKIIATD-------LQDLSIIDGIIPEPIGG 271 (317) Q Consensus 200 g~sGGA~a~~~~d~v~m~~~-s~ysvisPEg~AsILwkd~~~a~eAAealklTa~D-------L~~lGiID~II~EP~GG 271 (317) +++|||+.++++|.++|.++ +...+.+|---. ++---.+|+.+ ....|++|-+.+ T Consensus 188 ~~Gg~A~~~a~sd~vim~~~~a~if~aGP~vV~------------~a~ge~~~~eelGGa~~h~~~sGv~d~~~~----- 250 (531) T 3n6r_B 188 CAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVK------------TVTNEQVSAEELGGATTHTRKSSVADAAFE----- 250 (531) T ss_dssp CBGGGGHHHHHSSEEEEETTTCBCBSSCHHHHH------------HHHCCCCCHHHHHBHHHHHHTTSCCSEEES----- T ss_pred CCHHHHHHHHHCCEEEEEECCEEEEECCHHHHH------------HCCCCCCCHHHCCCHHHHHCCCCCCEEEEC----- T ss_conf 750887337668758997166048833606653------------000256694771447664202464236626----- Q ss_pred CCCCHHHHHHHHHHH Q ss_conf 448989999999999 Q gi|254780588|r 272 AHRNPAQTISSVGEI 286 (317) Q Consensus 272 AHrd~~~~~~~lk~~ 286 (317) |-.+.+..++.. T Consensus 251 ---de~ea~~~~r~~ 262 (531) T 3n6r_B 251 ---NDVEALAEVRRL 262 (531) T ss_dssp ---SHHHHHHHHHHH T ss_pred ---CHHHHHHHHHHH T ss_conf ---728999999998 No 20 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Probab=99.85 E-value=8.2e-19 Score=152.99 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=147.7 Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCC--EEEECC---CCCC--------CCCCEEEEEEEEECCCEEEEEEECCCCCCHHHH Q ss_conf 988876350022379998622545--067227---5334--------789729999887538008999845877502344 Q gi|254780588|r 59 QKTQVSRHPNRPHYIDYINSLFTH--FISLAG---DRLF--------GDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRI 125 (317) Q Consensus 59 ~~v~~aRh~~Rp~~~dyi~~l~~d--f~el~G---Dr~~--------~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~ 125 (317) ++|+.-+..+|.+.++.|+.|||+ |.|+.. .+.+ ..+-++|+|+|+|+|++|+|++++.. T Consensus 29 ~~v~~~~~~gkltaRERi~~LlD~gSF~E~~~~~~~~~~~~~~~~~~~~~dgvv~G~G~I~Gr~v~v~a~D~t------- 101 (522) T 1x0u_A 29 ERIQFQHSKGKLTARERLALLFDDGKFNEIMTFATTRATEFGLDKQRFYGDGVVTGWGKVDGRTVFAYAQDFT------- 101 (522) T ss_dssp HHHHHHHTTTCCCHHHHHHHHSSSSCCEESSSSCCCCCCGGGTTTCCCTTTTEEEEEEEETTEEEEEEEECTT------- T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCEECHHHHCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEECCC------- T ss_conf 9999999749999999999965899755835221646553354345688985999999999999999998785------- Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 20267768368999999999999719948999953532467784300279999999888623799889999616777754 Q gi|254780588|r 126 KHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGA 205 (317) Q Consensus 126 ~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA 205 (317) ..+|.+.+.+.+|..|.+++|.+.++|+|.|+|+.|+....+.....+...+.... .+++..+|+|++|+|.+.+||| T Consensus 102 -v~gGS~g~~~~~K~~~a~e~A~~~~lPlV~l~~SgGar~~eg~~~l~~~~~~~~~~-~~~s~~iP~Isvv~G~~~gG~a 179 (522) T 1x0u_A 102 -VLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGARIQEGALSLEGYGAVFKMN-VMASGVIPQITIMAGPAAGGAV 179 (522) T ss_dssp -TGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSBCGGGTHHHHHHHHHHHHHH-HHHTTTSCEEEEECSEEEGGGG T ss_pred -EECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCCEEEEECCCCCCCHH T ss_conf -50427787785786799999985599989996788877776520023421789999-9975899779981478871052 Q ss_pred CCCCCCCCEEEECCCC--EEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH Q ss_conf 2113320002204674--01215544224421560122565542038848999789965262288984448989999999 Q gi|254780588|r 206 MGIAAANFVYMLEHAI--YSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSV 283 (317) Q Consensus 206 ~a~~~~d~v~m~~~s~--ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~l 283 (317) +.++++|.++|.+++- ..+.+|.--.+..-.+.+ .+.+.=..-...+.|++|-+.+ |-.+.+..+ T Consensus 180 ~~~~~~d~vim~~~~~~~~flaGP~vv~~~~ge~~~-----~~elGga~~h~~~sG~~d~v~~--------de~~a~~~~ 246 (522) T 1x0u_A 180 YSPALTDFIIMIKGDAYYMFVTGPEITKVVLGEEVS-----FQDLGGAVVHATKSGVVHFMVD--------SEQEAINLT 246 (522) T ss_dssp HHHHHSSEEEEECSTTCEEESSCHHHHHHTTCCCCC-----HHHHHBHHHHHHTTCCCSEEES--------CHHHHHHHH T ss_pred HHHHHCCCEEEECCCCEEEEECCCCEEEEECCCCCC-----CCCCCCHHHHHHCCCCCCCCCC--------CHHHHHHHH T ss_conf 326646721220476237874164101320255446-----1013443354421686410045--------368999999 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780588|r 284 GEII 287 (317) Q Consensus 284 k~~i 287 (317) +..+ T Consensus 247 r~~l 250 (522) T 1x0u_A 247 KRLL 250 (522) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 21 >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=99.83 E-value=4.8e-19 Score=154.65 Aligned_cols=207 Identities=17% Similarity=0.155 Sum_probs=163.3 Q ss_pred HHCCHHHHHHHHHHHCCCC--EEEECCCC------------CC-----------CCCCEEEEEEEEECCCEEEEEEECCC Q ss_conf 6350022379998622545--06722753------------34-----------78972999988753800899984587 Q gi|254780588|r 64 SRHPNRPHYIDYINSLFTH--FISLAGDR------------LF-----------GDDPAMQIGLARFHGQPVAIIGQEKG 118 (317) Q Consensus 64 aRh~~Rp~~~dyi~~l~~d--f~el~GDr------------~~-----------~dD~aii~G~a~i~g~~v~vig~~kG 118 (317) +-|..|-...++|+.|||+ |.|+.-+- .| +.+.++++|+|+|+|++|+|++++.. T Consensus 49 C~~H~ri~areRi~~l~D~gsf~E~~~~~~~~dpl~f~d~~~y~~~l~~~~~~tg~~d~vv~g~G~I~g~~v~v~a~Dft 128 (304) T 2f9y_B 49 CDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLYGMPVVAAAFEFA 128 (304) T ss_dssp TCCBCCCCHHHHHHHHSCSSCCEECSCSCCCCCSSCCSSGGGTC------CCSSCCSSSEEEEECEETTEECBEEEECTT T ss_pred CCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEEECCH T ss_conf 98987549999998762498378767876777854565455550668765314488772499999999988899997362 Q ss_pred CCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 75023442026776836899999999999971994899995353246778430027999999988862379988999961 Q gi|254780588|r 119 SDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIG 198 (317) Q Consensus 119 ~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~g 198 (317) ..+|.+++...+|..|++++|.+.++|+|.|+|++|+....+.....|...+...+..+....+|+|+|++| T Consensus 129 --------~~GGS~g~~~geKi~ra~e~A~~~~lPlI~l~~SgGaRm~eg~~sl~~~~~~~~~~~~~~~~~iP~I~v~~g 200 (304) T 2f9y_B 129 --------FMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTD 200 (304) T ss_dssp --------STTTCBCTHHHHHHHHHHHHHHHHTCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE T ss_pred --------HHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf --------322433244445633599999972997699845888035555520002467999999998189977999668 Q ss_pred CCCCCCCCCCCC-CCCEEEECCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHH Q ss_conf 677775421133-2000220467401215544224421560122565542038848999789965262288984448989 Q gi|254780588|r 199 EGGSGGAMGIAA-ANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPA 277 (317) Q Consensus 199 eg~sGGA~a~~~-~d~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~ 277 (317) .+++|+++.+++ +|.++|.++|...+.+|.=-....-.+- + +-+. ++.-+.+.|+||.|++- T Consensus 201 p~~GG~~as~a~~~d~ii~~~~a~i~~aGP~Vv~~~~ge~l---~---e~~g-~a~~~~~~G~vD~vv~~---------- 263 (304) T 2f9y_B 201 PTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKL---P---PGFQ-RSEFLIEKGAIDMIVRR---------- 263 (304) T ss_dssp EEEHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTSCC---C---TTTT-BHHHHGGGTCCSEECCH---------- T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC---C---HHHC-CHHHHHHCCCCEEEECC---------- T ss_conf 96613412636477489995540003658666654307738---8---2210-37999867671089798---------- Q ss_pred HHHHHHHHHHHHHHHHHHCCC Q ss_conf 999999999999999985899 Q gi|254780588|r 278 QTISSVGEIISQFLSETSTYS 298 (317) Q Consensus 278 ~~~~~lk~~i~~~L~~L~~~~ 298 (317) +.++..|.+-+..|..++ T Consensus 264 ---~e~a~~l~~~l~~L~~lP 281 (304) T 2f9y_B 264 ---PEMRLKLASILAKLMNLP 281 (304) T ss_dssp ---HHHHHHHHHHHHHHTTCC T ss_pred ---HHHHHHHHHHHHHHCCCC T ss_conf ---899999999999972489 No 22 >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=99.81 E-value=2.5e-18 Score=149.57 Aligned_cols=208 Identities=13% Similarity=0.112 Sum_probs=161.8 Q ss_pred HHHCCHHHHHHHHHHHCCCC--EEEECCCCCC--------------------CCCCEEEEEEEEECCCEEEEEEECCCCC Q ss_conf 76350022379998622545--0672275334--------------------7897299998875380089998458775 Q gi|254780588|r 63 VSRHPNRPHYIDYINSLFTH--FISLAGDRLF--------------------GDDPAMQIGLARFHGQPVAIIGQEKGSD 120 (317) Q Consensus 63 ~aRh~~Rp~~~dyi~~l~~d--f~el~GDr~~--------------------~dD~aii~G~a~i~g~~v~vig~~kG~~ 120 (317) -+-|..|-.++++|+.|||+ |.|+..+... +.+-++++|.|+++|++|++.+++. T Consensus 54 ~C~~H~rl~areRi~~L~D~gsf~Ei~~~~~~~DpL~f~~Y~~rl~~a~~ktg~~d~vi~g~G~i~g~~v~v~~~Df--- 130 (285) T 2f9i_B 54 NCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDS--- 130 (285) T ss_dssp TTCCBCCCCHHHHHHHTSCTTCCEEESTTCEECCTTCCTTHHHHHHHHHHHHCCSSSEEEEEEEETTEEEEEEEECT--- T ss_pred CCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEEECCEEEEEEEEHH--- T ss_conf 99799865999999998089964981476567885554331232277885249886499999999999988653024--- Q ss_pred CHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 02344202677683689999999999997199489999535324677843002799999998886237998899996167 Q gi|254780588|r 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 121 ~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) ...+|++.+..-+|..|++++|.+.++|+|.|.|++||....+..-..|...+...+..++...+|+|++++|.. T Consensus 131 -----~f~GGS~g~~~geki~ra~e~A~~~~lP~I~~~~SGGaRmqeg~~sl~~~~~~~~a~~~~~~~gip~I~v~~~p~ 205 (285) T 2f9i_B 131 -----RFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPT 205 (285) T ss_dssp -----TTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEE T ss_pred -----HCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf -----415781788898999999999985189769981587818476331045552999999999868997699983884 Q ss_pred CCCCCCCCCC-CCCEEEECCCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHH Q ss_conf 7775421133-200022046740121554422442156012256554203884899978996526228898444898999 Q gi|254780588|r 201 GSGGAMGIAA-ANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQT 279 (317) Q Consensus 201 ~sGGA~a~~~-~d~v~m~~~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~ 279 (317) ++|+++.+++ +|.+++-++|...+.+|.=-...+-. +.-+-. -||.-+.+.|.||.|++- T Consensus 206 ~GG~~as~a~~~diii~e~~a~i~faGPrVi~~~~ge------~~pe~f-~~a~~~~~~G~iD~vv~r------------ 266 (285) T 2f9i_B 206 TGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINE------KLPDDF-QTAEFLLEHGQLDKVVHR------------ 266 (285) T ss_dssp EHHHHTTGGGCCSEEEECTTCBEESSCHHHHHHHHTS------CCCTTT-TBHHHHHHTTCCSEECCG------------ T ss_pred CHHHHHHHHHCCCEEEEECCEEEEEECHHHHHHHHCC------CCCCCC-CCHHHHHHCCCCCEEECH------------ T ss_conf 5003212231774899857718998787578786189------898232-345889966786768767------------ Q ss_pred HHHHHHHHHHHHHHHHCCC Q ss_conf 9999999999999985899 Q gi|254780588|r 280 ISSVGEIISQFLSETSTYS 298 (317) Q Consensus 280 ~~~lk~~i~~~L~~L~~~~ 298 (317) +.+++.|.+-|.-+...+ T Consensus 267 -~e~r~~l~~ll~~~~~~~ 284 (285) T 2f9i_B 267 -NDMRQTLSEILKIHQEVT 284 (285) T ss_dssp -GGHHHHHHHHHHHTCCSC T ss_pred -HHHHHHHHHHHHHHHHCC T ss_conf -999999999999665536 No 23 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Probab=99.70 E-value=1.1e-15 Score=130.94 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=138.1 Q ss_pred HHHHHHHCCCC---EEEECCCCCCCCC-CEEEEEEEEE------CCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHH Q ss_conf 79998622545---0672275334789-7299998875------380089998458775023442026776836899999 Q gi|254780588|r 72 YIDYINSLFTH---FISLAGDRLFGDD-PAMQIGLARF------HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAV 141 (317) Q Consensus 72 ~~dyi~~l~~d---f~el~GDr~~~dD-~aii~G~a~i------~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~ 141 (317) ..++-+.++|+ ++|+ +|..|++ -+||+|++++ +|++|+|+++|-. ..+|+..|...+|.. T Consensus 61 ~~~~~el~~d~~~~l~~~--~r~~g~n~~g~V~~~~~~~tpe~p~GR~vvVianD~T--------~~gGS~G~~~~~ki~ 130 (758) T 3k8x_A 61 FFISNELIEDENGELTEV--EREPGANAIGMVAFKITVKTPEYPRGRQFVVVANDIT--------FKIGSFGPQEDEFFN 130 (758) T ss_dssp GEEEEEEEECTTSCEEEE--CCCTTCCSSSEEEEEEEECCSSCTTCEEEEEEEECTT--------SGGGCBCHHHHHHHH T ss_pred EEEEEEEEECCCCCCCCC--CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC--------CCCCCCCHHHHHHHH T ss_conf 125666665478871123--5578988612697798968986889968999988476--------206578889999999 Q ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCC--------------------------------------------------- Q ss_conf 99999997199489999535324677843--------------------------------------------------- Q gi|254780588|r 142 RLMEMADRFKIPVISFIDTAGAYPGVDAE--------------------------------------------------- 170 (317) Q Consensus 142 r~~~~A~~f~lPiv~lvDtpGa~~g~~aE--------------------------------------------------- 170 (317) |..++|.+.++|+|+|+|+.||..|...| T Consensus 131 ~a~elA~~~glP~I~l~~sgGARi~~~eev~~~~~va~~~~~~p~~G~~ylyl~~e~~~~l~~~~~~~~v~~~~~~~~Ge 210 (758) T 3k8x_A 131 KVTEYARKRGIPRIYLAANSGARIGMAEEIVPLFQVAWNDAANPDKGFQYLYLTSEGMETLKKFDKENSVLTERTVINGE 210 (758) T ss_dssp HHHHHHHHHTCCEEEEECCCCBCCCCCGGGTTTCEEEESSTTCGGGCEEEEEECHHHHHHHHHTTCGGGEEEEEEEETTE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCC T ss_conf 99999998399989996588868643201023321134676673347552013667776664203456202210135776 Q ss_pred ------------------CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHH Q ss_conf ------------------00279999999888623799889999616777754211332000220467401215544224 Q gi|254780588|r 171 ------------------ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAAS 232 (317) Q Consensus 171 ------------------~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~As 232 (317) --..++.|+.....++. .+|+||+|+|.+.+||||.++++|+++|.+++-+-...|-.--. T Consensus 211 ~~~~i~~iiG~~~~~GVe~L~g~G~I~~~~s~as~-~iP~Is~V~G~~~GggAy~~~l~D~vImv~~~~i~ltGp~av~k 289 (758) T 3k8x_A 211 ERFVIKTIIGSEDGLGVECLRGSGLIAGATSRAYH-DIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINK 289 (758) T ss_dssp EEEEEEEECCSSSCSSHHHHHHHHHHHHHHHHHHT-TSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESSCHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHCCCCEEEECCCEEEEECCHHHHH T ss_conf 42000344465455552000455799999876612-57679997067652356532205602663685389978578888 Q ss_pred HHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 4215601225655420388489997899652622 Q gi|254780588|r 233 ILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 233 ILwkd~~~a~eAAealklTa~DL~~lGiID~II~ 266 (317) .+-++....++-.- .+.-+.+.|++|-+.+ T Consensus 290 ~~G~ev~~~~~~~G----~~~~~~~nGv~d~~a~ 319 (758) T 3k8x_A 290 MLGREVYTSNLQLG----GTQIMYNNGVSHLTAV 319 (758) T ss_dssp HHTSCCCSCTHHHH----SHHHHTTTTSSSEEES T ss_pred HHCCCCCCCCCCCC----HHHHHHCCCCEEEEEC T ss_conf 74572556654542----5767634664058644 No 24 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=99.67 E-value=6.6e-15 Score=125.27 Aligned_cols=195 Identities=19% Similarity=0.216 Sum_probs=143.7 Q ss_pred HHHH-HHHHHHHCCCC---EEEECCCCCCCC-CCEEEEEEEEE------CCCEEEEEEECCCCCCHHHHHHCCCCCCHHH Q ss_conf 0223-79998622545---067227533478-97299998875------3800899984587750234420267768368 Q gi|254780588|r 68 NRPH-YIDYINSLFTH---FISLAGDRLFGD-DPAMQIGLARF------HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEG 136 (317) Q Consensus 68 ~Rp~-~~dyi~~l~~d---f~el~GDr~~~d-D~aii~G~a~i------~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g 136 (317) ..|. ..++.+.++|+ ++|. +|.-|. +-+||+|++++ +|++|+|+++|-. ...|...|.. T Consensus 46 ~~~~~~~~~~el~ld~~~~l~~~--~r~~g~n~~gmV~~~~~~~t~~~~~GR~vvvianD~T--------~~~GS~g~~~ 115 (760) T 3ff6_A 46 KYPKDILTYTELVLDSQGQLVEM--NRLPGGNEVGMVAFKMRFKTQEYPEGRDVIVIGNDIT--------FRIGSFGPGE 115 (760) T ss_dssp TCCSCSEEEEEEEECTTSCEEEE--CCCSSCCSSSEEEEEEEECCSSCTTCEEEEEEEECTT--------SGGGCBCHHH T ss_pred CCCCCCEEEEEEEECCCCCEEEC--CCCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCC--------EECCCCCHHH T ss_conf 79875225678888599975654--5578888613596899867987869808999998476--------4054787899 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---------------------------------------------- Q ss_conf 9999999999997199489999535324677843---------------------------------------------- Q gi|254780588|r 137 YRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAE---------------------------------------------- 170 (317) Q Consensus 137 ~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE---------------------------------------------- 170 (317) .+|..|..++|.+.++|+|+|+|+.||.+|.+.| T Consensus 116 ~~k~~~a~elA~~~~lP~I~l~~ssGARi~~~e~~~~~~~va~~~~~~~~~G~~yly~t~~~~~~~~~~~~v~~~~~~~~ 195 (760) T 3ff6_A 116 DLLYLRASEMARAEGIPKIYVAANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYLYLTPQDYTRISSLNSVHCKHIEEG 195 (760) T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCCBCCCCCHHHHTTCEEEESCTTCTTSCEEEEEECHHHHHHHHTTTCEEEEEECGG T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHCCCCEEEEECCC T ss_conf 99999999999984998899954788686432211112321345777744562122057788876541364201100247 Q ss_pred --------------------CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHH Q ss_conf --------------------002799999998886237998899996167777542113320002204674012155442 Q gi|254780588|r 171 --------------------ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGA 230 (317) Q Consensus 171 --------------------~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~ 230 (317) --+.+..|+... .++...+|+||+|+|.+.+|||+..+++|+++|.+++...+.+|..- T Consensus 196 ge~~~~i~~iig~~~~~GVe~L~g~g~i~~~~-s~a~~~Iptis~V~G~~~GggAyl~~L~d~~I~~~~s~i~LtGp~vl 274 (760) T 3ff6_A 196 GESRYMITDIIGKDDGLGVENLRGSGMIAGES-SLAYEEIVTISLVTCRAIGIGAYLVRLGQRVIQVENSHIILTGASAL 274 (760) T ss_dssp GCCEEEEEEECCSSSSSSHHHHHHHHHHHHHH-HHHHHHSCEEEEESSCEETHHHHHHHHHCEEEEETTCBEESSCHHHH T ss_pred CCCCCEECCCCCCCCCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEECCCCCCHHHHHHHCCCEEEEECCCEEEEECCHHH T ss_conf 76421002333665565500267779999999-97547898899971686515664321064378757835885184777 Q ss_pred HHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHH Q ss_conf 2442156012256554203884899978996526228898444898999999999 Q gi|254780588|r 231 ASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGE 285 (317) Q Consensus 231 AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~~lk~ 285 (317) -..+-+.....+ +.++ .+.-+...|++|.+.+ |-.+.+..++. T Consensus 275 ~~~~G~ev~~s~---e~~G-g~~~~~~nGvad~~a~--------dd~eai~~ir~ 317 (760) T 3ff6_A 275 NKVLGREVYTSN---NQLG-GVQIMHYNGVSHITVP--------DDFEGVYTILE 317 (760) T ss_dssp HHHHSSCCCCCH---HHHH-BHHHHTTTTSSSEEES--------SHHHHHHHHHH T ss_pred HHHCCCCCCCCC---HHCC-HHHHHCCCCCCCEEEC--------CHHHHHHHHHH T ss_conf 653586304780---3217-0555334777660116--------88999999999 No 25 >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Probab=98.69 E-value=1.8e-07 Score=72.57 Aligned_cols=128 Identities=14% Similarity=0.177 Sum_probs=93.6 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEE---CCCCCCC Q ss_conf 6776836899999999999971994-89999535324677843002799999998886237998899996---1677775 Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEMADRFKIP-VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIII---GEGGSGG 204 (317) Q Consensus 129 ~G~~~p~g~rKa~r~~~~A~~f~lP-iv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~---geg~sGG 204 (317) .|+.+|..++...|.++.|+.-+.. ||-.|||||-.+ -++..|++. +..++.|++++|. |..+||| T Consensus 16 ~G~I~~~~~~~i~~~l~~a~~~~~kaivL~IdSPGG~v-------~~~~~I~~~---i~~~~~~v~~~v~~~~~~AaS~g 85 (230) T 3bpp_A 16 KGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRA-------DAMMNIVQR---IQQSKIPVIIYVYPPGASAASAG 85 (230) T ss_dssp ESSBCHHHHHHHHHHHHHHHHTTCSEEEEEEEBSCBCH-------HHHHHHHHH---HHTCSSCEEEEECSTTCEEETHH T ss_pred EEEECHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH-------HHHHHHHHH---HHHCCCCCCEEEEECCHHHHHHH T ss_conf 76888699999999999997689986999985988189-------999999999---86046788579997344677778 Q ss_pred CCCCCCCCCEEEECCCCEEEECHHHHHHHHC-------------------------CCCHHHHH-HHHHCCCCHHHHHHC Q ss_conf 4211332000220467401215544224421-------------------------56012256-554203884899978 Q gi|254780588|r 205 AMGIAAANFVYMLEHAIYSVISPEGAASILW-------------------------RDSSRAAQ-AAIAMKIIATDLQDL 258 (317) Q Consensus 205 A~a~~~~d~v~m~~~s~ysvisPEg~AsILw-------------------------kd~~~a~e-AAealklTa~DL~~l 258 (317) ++....||+++|.++|....+.|=+...-.+ ++.+.+++ ..+..-+|+++.+++ T Consensus 86 ~~ia~a~d~i~~~p~s~iGs~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~~~~~~~~~eA~~~ 165 (230) T 3bpp_A 86 TYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKY 165 (230) T ss_dssp HHHHHTSSEEEECTTCEEECCCCEEECCSSSCCEECCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHTCCEECHHHHHHT T ss_pred HHHHHCCCEEEECCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHC T ss_conf 99885089899789981756454235788502677788889999999999999939499999988766878649999981 Q ss_pred CCCCEEEC Q ss_conf 99652622 Q gi|254780588|r 259 SIIDGIIP 266 (317) Q Consensus 259 GiID~II~ 266 (317) |++|.|.. T Consensus 166 GlvD~i~~ 173 (230) T 3bpp_A 166 GVIEVVAR 173 (230) T ss_dssp TSCSEECS T ss_pred CCCCEECC T ss_conf 97300238 No 26 >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Probab=98.61 E-value=2.7e-06 Score=64.15 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=95.2 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCC---------C-HHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 77683689999999999997-199489999535324-677843---------0-02799999998886237998899996 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAE---------A-RGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE---------~-~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ...+++-++.....++.+++ -++-+|-|.-.++++ .|.+-. + ........+.+..+..+.+|+|++|- T Consensus 46 Nal~~~~~~eL~~al~~~~~d~~i~vvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~PvIa~v~ 125 (263) T 2j5g_A 46 LVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVN 125 (263) T ss_dssp CEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 88899999999999999975999859999788997528872313344455310146678999999999966997587618 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEE-------EECHHHHHHHHCCCC---HHHHHH-HHHCCCCHHHHHHCCCCCEEEC Q ss_conf 16777754211332000220467401-------215544224421560---122565-5420388489997899652622 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYS-------VISPEGAASILWRDS---SRAAQA-AIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ys-------visPEg~AsILwkd~---~~a~eA-AealklTa~DL~~lGiID~II~ 266 (317) |-..+||.++++ ||.+++.+++.|. -+.|.+.++.+|... .++.+. -..-.++|++++++|+||+|+| T Consensus 126 G~a~GGg~lal~-cD~~ia~~~a~f~~~pe~~~G~~p~~g~~~~l~~~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~ 204 (263) T 2j5g_A 126 GAALLHSEYILT-TDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLP 204 (263) T ss_dssp SEECSCGGGGGG-CSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHTTSCSEEEC T ss_pred CCEEEEEEECCC-CCEEEECCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEEC T ss_conf 854788774255-6347864786687641111166767560778898846999976561398012999977799309878 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 267 E 267 (317) Q Consensus 267 E 267 (317) . T Consensus 205 ~ 205 (263) T 2j5g_A 205 Q 205 (263) T ss_dssp G T ss_pred H T ss_conf 7 No 27 >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Probab=98.39 E-value=6.6e-06 Score=61.41 Aligned_cols=138 Identities=14% Similarity=0.171 Sum_probs=97.7 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCC-----------CHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 7683689999999999997199489999535324-677843-----------0027999999988862379988999961 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAE-----------ARGQGEAIARATEMCLKLQVPILSIIIG 198 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE-----------~~G~~~aia~~l~~~~~~~vP~i~vv~g 198 (317) .++++-++-..+.++-++.-.+=+|-|.-.+.++ .|.+-. ..-....+.+.+..+..+.+|+|+.|-| T Consensus 30 al~~~~~~el~~~l~~~~~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G 109 (267) T 3hp0_A 30 TINDTLIEECLQVLNQCETSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRG 109 (267) T ss_dssp CBCSHHHHHHHHHHHHHHHSSCCEEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEEECS T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 99999999999999997469955999978998734799732252002210022232168999999997389888999656 Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC--CHHHHHH-HHHCCCCHHHHHHCCCCCEEECCC Q ss_conf 67777542113320002204674012------1554422442156--0122565-542038848999789965262288 Q gi|254780588|r 199 EGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD--SSRAAQA-AIAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 199 eg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd--~~~a~eA-AealklTa~DL~~lGiID~II~EP 268 (317) ...+||+--...||.+++.+++.|+. +.|-+..+.|.|- ..++.+. -..-.++|++++++|+||+|++++ T Consensus 110 ~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~iG~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~ 188 (267) T 3hp0_A 110 KVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAES 188 (267) T ss_dssp EEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSSSCBCSCT T ss_pred CEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCH T ss_conf 3231306877764766665401114741250678870243587772969999998628978899998889946766955 No 28 >2fbm_A Y chromosome chromodomain protein 1, telomeric isoform B; acetyltransferase, structural genomics, structural genomics consortium, SGC; 2.28A {Homo sapiens} SCOP: c.14.1.3 Probab=98.38 E-value=1.1e-05 Score=59.74 Aligned_cols=138 Identities=17% Similarity=0.253 Sum_probs=97.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC--------H-----HHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 77683689999999999997199489999535324-6778430--------0-----27999999988862379988999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA--------R-----GQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~--------~-----G~~~aia~~l~~~~~~~vP~i~v 195 (317) ...+++-++...+.++.++.-..-+|-|.-.++++ .|.+-.+ . -....+.+.+..+..+..|+|+. T Consensus 46 Nal~~~~~~eL~~al~~~~~d~~~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa 125 (291) T 2fbm_A 46 NALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS 125 (291) T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 79899999999999999873998799997889956748875545322223210237999999999999998679989999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHHH-HHHCCCCHHHHHHCCCCCEEE Q ss_conf 96167777542113320002204674012------1554422442156---0122565-542038848999789965262 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQA-AIAMKIIATDLQDLSIIDGII 265 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~eA-AealklTa~DL~~lGiID~II 265 (317) |-|-+.+||..-...||.+++.++++|+. +.|.++++.++.. ..++.+. -..-.++|.+++++|+||+|+ T Consensus 126 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gi~p~~~~~~~l~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv 205 (291) T 2fbm_A 126 VNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVF 205 (291) T ss_dssp ECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHTSCCEEEHHHHHHTTSCSEEE T ss_pred ECCEECCCCCCEEECCCEECCCHHHHHHHHHCEECCCCCCCCCCCHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEEE T ss_conf 79910318873002356530144333231120006534654431004550456887999808724599999849930870 Q ss_pred CC Q ss_conf 28 Q gi|254780588|r 266 PE 267 (317) Q Consensus 266 ~E 267 (317) |. T Consensus 206 ~~ 207 (291) T 2fbm_A 206 LT 207 (291) T ss_dssp CS T ss_pred CH T ss_conf 82 No 29 >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Probab=98.35 E-value=8e-06 Score=60.82 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=96.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC-------------HHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 77683689999999999997199489999535324-6778430-------------027999999988862379988999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA-------------RGQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~-------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317) ..++++-++-....++.++.-..-+|-+--.++++ .|.+-.+ ......+.+.+..+..+.+|+|+. T Consensus 28 Nal~~~~~~el~~al~~~~~d~~~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 107 (261) T 2gtr_A 28 NSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA 107 (261) T ss_dssp TEECHHHHHHHHHHHHHHHHSSCSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 58899999999999999862997699997899864668887354221123320247899999988767875099989999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHH-HHHHCCCCHHHHHHCCCCCEEE Q ss_conf 96167777542113320002204674012------1554422442156---012256-5542038848999789965262 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQ-AAIAMKIIATDLQDLSIIDGII 265 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~e-AAealklTa~DL~~lGiID~II 265 (317) |-|.+.+||+.-...||.++|.++++|+. +.|.++++-++.. ..++.+ +-..-.++|++++++|+||+|+ T Consensus 108 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 187 (261) T 2gtr_A 108 VNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVF 187 (261) T ss_dssp ECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEE T ss_pred ECCEEEECCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 87814662117530001412335456553210147778843477899981952224542356767788997679736870 Q ss_pred C Q ss_conf 2 Q gi|254780588|r 266 P 266 (317) Q Consensus 266 ~ 266 (317) | T Consensus 188 ~ 188 (261) T 2gtr_A 188 W 188 (261) T ss_dssp C T ss_pred C T ss_conf 8 No 30 >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, structural genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Probab=98.32 E-value=5.9e-05 Score=54.69 Aligned_cols=138 Identities=15% Similarity=0.296 Sum_probs=94.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC-------------HHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 77683689999999999997199489999535324-6778430-------------027999999988862379988999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA-------------RGQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~-------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317) ..++++-.+.....++.+++-.--+|-+.-.++++ .|.+-.+ +.....+.+.+..+..+..|+|+. T Consensus 48 Nals~~~~~el~~~l~~~~~d~~v~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa 127 (280) T 2f6q_A 48 NAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAV 127 (280) T ss_dssp TCBCHHHHHHHHHHHHHHHHSSCSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 89899999999999998744999899996899877689867887413223320145778999999999999689988999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHC-C--CCHHHHHHH-HHCCCCHHHHHHCCCCCEEE Q ss_conf 96167777542113320002204674012------15544224421-5--601225655-42038848999789965262 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILW-R--DSSRAAQAA-IAMKIIATDLQDLSIIDGII 265 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILw-k--d~~~a~eAA-ealklTa~DL~~lGiID~II 265 (317) |-|...+||..-...||.+++.+++.|.. +.|.+.++..+ | -..++.+.. ..-.++|++++++|+||+|+ T Consensus 128 v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~vv 207 (280) T 2f6q_A 128 VNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVF 207 (280) T ss_dssp ECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEE T ss_pred ECCEEEECCCCCCCCCCCCCCCCCCEEECHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCEEEEE T ss_conf 76868755541003445322056858976143258584516689977761867779998727989899998779935880 Q ss_pred CC Q ss_conf 28 Q gi|254780588|r 266 PE 267 (317) Q Consensus 266 ~E 267 (317) |. T Consensus 208 ~~ 209 (280) T 2f6q_A 208 PD 209 (280) T ss_dssp CT T ss_pred CH T ss_conf 85 No 31 >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Probab=98.28 E-value=3.3e-05 Score=56.43 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=103.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECC-CCC-CCCCCC----------CHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 776836899999999999971-99489999535-324-677843----------00279999999888623799889999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTA-GAY-PGVDAE----------ARGQGEAIARATEMCLKLQVPILSII 196 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtp-Ga~-~g~~aE----------~~G~~~aia~~l~~~~~~~vP~i~vv 196 (317) ...+++-++.....++.++.- .+-+|-|.-.. .++ .|.+-. .......+.+.+..+.++.+|+|+.| T Consensus 22 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaai 101 (250) T 2a7k_A 22 NPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV 101 (250) T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99999999999999999963999649999828999665887633333223305689999889999999996798748866 Q ss_pred ECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 6167777542113320002204674012------155442244215--6012256-554203884899978996526228 Q gi|254780588|r 197 IGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 197 ~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) -|...+||.--...||.+++.+++.|+. +.|.+.++.|.| ...++.+ .-..-.++|+++++.|+||+|+|. T Consensus 102 ~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 181 (250) T 2a7k_A 102 DGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAAILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVES 181 (250) T ss_dssp CSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTCCSEEECH T ss_pred CCEEECCCCHHHHCCCCCCCCCCCEEEEECCCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECH T ss_conf 76274264432322454523414277640355525576168789887339999999983990068999980997777684 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 8984448989999999999999999985899899999 Q gi|254780588|r 268 PIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304 (317) Q Consensus 268 P~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~ 304 (317) +.+.+...+....+.+.++..+.. T Consensus 182 -------------~~l~~~a~~~a~~la~~~~~a~~~ 205 (250) T 2a7k_A 182 -------------SALLDAAITQAHVMASYPASAFIN 205 (250) T ss_dssp -------------HHHHHHHHHHHHHHHTSCHHHHHH T ss_pred -------------HHHHHHHHHHHHHHHCCCHHHHHH T ss_conf -------------799999999999998589999999 No 32 >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Probab=98.26 E-value=2.2e-05 Score=57.71 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=91.3 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-CCCCCC--------HHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 76836899999999999971994899995353246-778430--------027999999988862379988999961677 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYP-GVDAEA--------RGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~-g~~aE~--------~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) ..+++-.+-....++.++.-. -||-+-.+|+++. |.+-++ .-....+.+.+..+....+|+|+.|-|.+. T Consensus 28 al~~~~~~~l~~~l~~~~~d~-~Vvi~s~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~Ia~v~G~~~ 106 (232) T 3ot6_A 28 AISPDVIIAFNAALDQAEKDR-AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAV 106 (232) T ss_dssp CBCHHHHHHHHHHHHHHHHTT-CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEE T ss_pred CCCHHHHHHHHHHHHHHCCCC-EEEEEECCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEE T ss_conf 899999999999999855498-2999977999676432243111111246677678999999997089977999806350 Q ss_pred CCCCCCCCCCCCEEEECCCC-E-------EEECHHHHHHHHCC--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEEC Q ss_conf 77542113320002204674-0-------12155442244215--60122565-5420388489997899652622 Q gi|254780588|r 202 SGGAMGIAAANFVYMLEHAI-Y-------SVISPEGAASILWR--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 202 sGGA~a~~~~d~v~m~~~s~-y-------svisPEg~AsILwk--d~~~a~eA-AealklTa~DL~~lGiID~II~ 266 (317) +||..-...||.+++.+++. | .+..|-|.+..+.+ ...++.+. -..-.+||+++++.|+||+|++ T Consensus 107 GgG~~lal~~D~ria~~~~~~~~~pe~~~Gi~p~~~~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 182 (232) T 3ot6_A 107 AKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVS 182 (232) T ss_dssp THHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHHHTSCCEECHHHHHHHTSCSEEEC T ss_pred CCCCHHHHHCCCHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEEEC T ss_conf 6621445514613453055433230015666567634457777727257778987089898999997799758708 No 33 >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Probab=98.23 E-value=3.6e-06 Score=63.30 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=83.6 Q ss_pred CCCCCHHHHHHHHHHHHHHH-H-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC Q ss_conf 67768368999999999999-7-199489999535324677843002799999998886237998899996167777542 Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEMAD-R-FKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAM 206 (317) Q Consensus 129 ~G~~~p~g~rKa~r~~~~A~-~-f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~ 206 (317) +|..+++-.......+...+ + -.-||..++++||-.. .+.....-.|...+.|+.+++.|-..|.|++ T Consensus 36 ~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~INSpGG~v----------~~g~ai~d~i~~~~~~V~Tv~~G~aaS~a~l 105 (201) T 3p2l_A 36 NGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMV----------TAGMGVYDTMQFIKPDVSTICIGLAASMGSL 105 (201) T ss_dssp ESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEEEETHHHH T ss_pred CCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH----------HHHHHHHHHHHHCCCCEEEEEECCHHHHHHH T ss_conf 986868999999999999873368898699981899878----------8999999999847999899994528767999 Q ss_pred CCCCC--CCEEEECCCCEEEECHH----HHHHHHCCCC-------------------HHHHHHHHHC----CCCHHHHHH Q ss_conf 11332--00022046740121554----4224421560-------------------1225655420----388489997 Q gi|254780588|r 207 GIAAA--NFVYMLEHAIYSVISPE----GAASILWRDS-------------------SRAAQAAIAM----KIIATDLQD 257 (317) Q Consensus 207 a~~~~--d~v~m~~~s~ysvisPE----g~AsILwkd~-------------------~~a~eAAeal----klTa~DL~~ 257 (317) -++.+ +.-.|++||.+..=.|- |-++=++... ...++..+.+ -+||++.++ T Consensus 106 il~aG~k~~R~~~pns~iMiHq~~~~~~G~~~di~~~~~el~~~~~~i~~i~a~~tg~~~~~i~~~~~rd~~lta~EAle 185 (201) T 3p2l_A 106 LLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKA 185 (201) T ss_dssp HHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHH T ss_pred HHHCCCCCEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 99679988687574704677156778885799999999999999999999999997959999998614784357999998 Q ss_pred CCCCCEEECC Q ss_conf 8996526228 Q gi|254780588|r 258 LSIIDGIIPE 267 (317) Q Consensus 258 lGiID~II~E 267 (317) +|+||+||+. T Consensus 186 yGliD~Ii~~ 195 (201) T 3p2l_A 186 YGLIDHVIES 195 (201) T ss_dssp HTSCSEECCC T ss_pred CCCCCEEECC T ss_conf 4998497055 No 34 >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Probab=98.20 E-value=4.4e-05 Score=55.55 Aligned_cols=138 Identities=16% Similarity=0.112 Sum_probs=92.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEC-CCCC-CCCCCC-------------CHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 776836899999999999971-9948999953-5324-677843-------------00279999999888623799889 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDT-AGAY-PGVDAE-------------ARGQGEAIARATEMCLKLQVPIL 193 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDt-pGa~-~g~~aE-------------~~G~~~aia~~l~~~~~~~vP~i 193 (317) ...+++-++.....++.+++- .+-+|-|.=+ ++++ .|.+-. .+.....+.+.+..+..+..|+| T Consensus 26 Nals~~~~~el~~~l~~~~~d~~v~~vVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvI 105 (263) T 3lke_A 26 NGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTV 105 (263) T ss_dssp TBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHTCSSEEE T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 89899999999999999850999579999638986416886210232001111157788889999999999983999899 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHH-HHHCC--CCHHHHHHH-HHCCCCHHHHHHCCCCCE Q ss_conf 9996167777542113320002204674012------1554422-44215--601225655-420388489997899652 Q gi|254780588|r 194 SIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAA-SILWR--DSSRAAQAA-IAMKIIATDLQDLSIIDG 263 (317) Q Consensus 194 ~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~A-sILwk--d~~~a~eAA-ealklTa~DL~~lGiID~ 263 (317) ++|-|-+.+||..-...||.+++.++++|+. +.|.++. ..|-| ...++.+.. ..-+++|+++++.|+||+ T Consensus 106 aav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~G~~~~~g~~~~l~r~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~ 185 (263) T 3lke_A 106 ALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQE 185 (263) T ss_dssp EEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSE T ss_pred EEECCCCCCCCHHHHHHCCEEEECCCCEECCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCEE T ss_conf 99768356065488740201022466614263114653778207899999976899999996599743314887797248 Q ss_pred EECC Q ss_conf 6228 Q gi|254780588|r 264 IIPE 267 (317) Q Consensus 264 II~E 267 (317) |++. T Consensus 186 vv~~ 189 (263) T 3lke_A 186 ICEN 189 (263) T ss_dssp EESS T ss_pred EECC T ss_conf 7399 No 35 >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Probab=98.19 E-value=8.9e-06 Score=60.51 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=84.8 Q ss_pred CCCCCHHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC Q ss_conf 67768368999999-99999971994899995353246778430027999999988862379988999961677775421 Q gi|254780588|r 129 FGSPRPEGYRKAVR-LMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMG 207 (317) Q Consensus 129 ~G~~~p~g~rKa~r-~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a 207 (317) +|..+++-....+. +.-+...-.-||.-+|++||-... .+-+| .-.|..++.|+.+|+.|-.+|-|++. T Consensus 45 ~g~Id~~~a~~ii~~Ll~L~~~~~~~I~l~INS~GG~v~-------~g~aI---yd~i~~~~~~V~Tv~~G~aaS~as~I 114 (215) T 2f6i_A 45 TDEINKKTADELISQLLYLDNINHNDIKIYINSPGGSIN-------EGLAI---LDIFNYIKSDIQTISFGLVASMASVI 114 (215) T ss_dssp CSCBCHHHHHHHHHHHHHHHHHCCSCEEEEEEECCBCHH-------HHHHH---HHHHHHSSSCEEEEEEEEECHHHHHH T ss_pred CCEECHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH-------HHHHH---HHHHHHCCCCEEEEEECCCHHHHHHH T ss_conf 981278999999999999755899785999989997688-------99999---99998669985999978850456888 Q ss_pred CCCCCC--EEEECCCCEEEECHHH----HHHHH---CC-------------------CCHHHHHHHH-HCCCCHHHHHHC Q ss_conf 133200--0220467401215544----22442---15-------------------6012256554-203884899978 Q gi|254780588|r 208 IAAANF--VYMLEHAIYSVISPEG----AASIL---WR-------------------DSSRAAQAAI-AMKIIATDLQDL 258 (317) Q Consensus 208 ~~~~d~--v~m~~~s~ysvisPEg----~AsIL---wk-------------------d~~~a~eAAe-alklTa~DL~~l 258 (317) ++.+++ ..|++||.+..=.|-+ -++=+ ++ +.++.++..+ -.-+||++.+++ T Consensus 115 l~aG~kg~R~~~pns~iMiHq~s~~~~G~~~di~~~~~el~~~~~~i~~~~a~~tg~~~e~I~~~~~~d~~lsa~EA~e~ 194 (215) T 2f6i_A 115 LASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQY 194 (215) T ss_dssp HHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHH T ss_pred HHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHC T ss_conf 86078884683477569973687677887579999999999999999999998829999999987158815049999983 Q ss_pred CCCCEEECCCCC Q ss_conf 996526228898 Q gi|254780588|r 259 SIIDGIIPEPIG 270 (317) Q Consensus 259 GiID~II~EP~G 270 (317) |+||+||+-... T Consensus 195 GliD~Ii~~k~~ 206 (215) T 2f6i_A 195 GIIDEVIETKLP 206 (215) T ss_dssp TSCSEECCCSSC T ss_pred CCCCEECCCCCC T ss_conf 998698216999 No 36 >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* Probab=98.17 E-value=5.5e-06 Score=62.01 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=85.4 Q ss_pred HHHCCCCCCHHHHHHHHHH-HHHHHH-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 4202677683689999999-999997-19948999953532467784300279999999888623799889999616777 Q gi|254780588|r 125 IKHNFGSPRPEGYRKAVRL-MEMADR-FKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGS 202 (317) Q Consensus 125 ~~~n~G~~~p~g~rKa~r~-~~~A~~-f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~s 202 (317) +-.-+|..+++-....... ..+..+ -.-||-.++++||-.. .+...-.-.|-..++|+.+|+.|-..| T Consensus 28 iifl~~~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InSpGG~v----------~~gl~i~D~i~~~~~~V~Tv~~G~aaS 97 (193) T 1yg6_A 28 VIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVI----------TAGMSIYDTMQFIKPDVSTICMGQAAS 97 (193) T ss_dssp EEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEEEET T ss_pred EEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCH----------HHHHHHHHHHHHCCCCEEEEEEHHHHH T ss_conf 8988988646889999999999980499999799997899627----------579999999842799999998249998 Q ss_pred CCCCCCCCCC--CEEEECCCCEEEECHH----HHHHHHCCCCH-------------------HHHHHHHHCC----CCHH Q ss_conf 7542113320--0022046740121554----42244215601-------------------2256554203----8848 Q gi|254780588|r 203 GGAMGIAAAN--FVYMLEHAIYSVISPE----GAASILWRDSS-------------------RAAQAAIAMK----IIAT 253 (317) Q Consensus 203 GGA~a~~~~d--~v~m~~~s~ysvisPE----g~AsILwkd~~-------------------~a~eAAealk----lTa~ 253 (317) -|++-++.++ +-+|++||.+..=.|- |-++=++...+ ..++..+.|+ +||+ T Consensus 98 ~a~lIl~~G~~g~R~~~pns~iMiHq~s~~~~G~~~di~~~~~el~~~~~~i~~i~a~~tg~~~~~i~~~~~rd~~l~a~ 177 (193) T 1yg6_A 98 MGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAP 177 (193) T ss_dssp HHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHH T ss_pred HHHHHHHCCCCCCEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHH T ss_conf 99999975999974576653776225664657549999999999999999999999999793999999872478337799 Q ss_pred HHHHCCCCCEEECC Q ss_conf 99978996526228 Q gi|254780588|r 254 DLQDLSIIDGIIPE 267 (317) Q Consensus 254 DL~~lGiID~II~E 267 (317) +.+++|+||+||.. T Consensus 178 EAl~~GiiD~Ii~~ 191 (193) T 1yg6_A 178 EAVEYGLVDSILTH 191 (193) T ss_dssp HHHHHTSSSEECCC T ss_pred HHHHCCCCCEEECC T ss_conf 99980998589356 No 37 >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Bordetella parapertussis} Probab=98.14 E-value=6.1e-05 Score=54.57 Aligned_cols=159 Identities=13% Similarity=0.116 Sum_probs=101.6 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCCC---------HHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 7683689999999999997199489999535324-6778430---------02799999998886237998899996167 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAEA---------RGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE~---------~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) .++++-++-....++.++.-.+-+|-|--.+.+| .|.+-.+ .-....+.+.+..+.++.+|+|+.|-|.. T Consensus 30 al~~~m~~el~~al~~~~~~~v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a 109 (254) T 3isa_A 30 ALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRN 109 (254) T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECSEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCE T ss_conf 99999999999999997579954999978899711698704310110012456678999999999858998999679718 Q ss_pred CCCCCCCCCCCCCEEEECCCCEEEECHHHH------HHHHCC--CCHHHHHHH-HHCCCCHHHHHHCCCCCEEECCCCCC Q ss_conf 777542113320002204674012155442------244215--601225655-42038848999789965262288984 Q gi|254780588|r 201 GSGGAMGIAAANFVYMLEHAIYSVISPEGA------ASILWR--DSSRAAQAA-IAMKIIATDLQDLSIIDGIIPEPIGG 271 (317) Q Consensus 201 ~sGGA~a~~~~d~v~m~~~s~ysvisPEg~------AsILwk--d~~~a~eAA-ealklTa~DL~~lGiID~II~EP~GG 271 (317) .+||+--...||.+++.+++.|+. ||.- +..|.+ ...++.+.. ..-.++|+++++.|+||+|++.. T Consensus 110 ~GgG~~lal~~D~ria~~~a~f~~--pe~~~Gl~pg~~~l~r~iG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~--- 184 (254) T 3isa_A 110 FGAGVDLFAACKWRYCTPEAGFRM--PGLKFGLVLGTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQA--- 184 (254) T ss_dssp ETHHHHHHHHSSEEEECTTCEEEC--CGGGGTCCCSHHHHHHHHCHHHHHHHHTTTCEEEHHHHHHTTSSSEECCGG--- T ss_pred EECCCCCCCCCCEEEECCCCCCCC--CCEEEEECCCCCCCHHHCCHHHHHHHHHHCCCCCHHHHHHCCCHHEECCHH--- T ss_conf 764762355577689765435557--510250057765434441699999998606776778999769731562887--- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 448989999999999999999985899899999 Q gi|254780588|r 272 AHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304 (317) Q Consensus 272 AHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~ 304 (317) .+...+......+...++..+.. T Consensus 185 ----------~l~~~~~~~a~~l~~~~p~a~~~ 207 (254) T 3isa_A 185 ----------QWPALIDAAAEAATALDPATRAT 207 (254) T ss_dssp ----------GHHHHHHHHHHHHTTSCHHHHHH T ss_pred ----------HHHHHHHHHHHHHHCCCHHHHHH T ss_conf ----------99999999999998399999999 No 38 >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on protein structural and functional analyses; 2.00A {Geobacillus kaustophilus} Probab=98.13 E-value=4.7e-05 Score=55.38 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=94.9 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCC--------CHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 77683689999999999997-199489999535324-677843--------00279999999888623799889999616 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAE--------ARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE--------~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) ..++++-.+-..+.++.+++ -.+-+|.+--.++++ .|.+-. .......+.+.+..+..+.+|+|+.|-|- T Consensus 25 Nal~~~~~~~l~~~l~~~~~d~~v~vvvl~g~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kP~Iaav~G~ 104 (257) T 2ej5_A 25 NAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGA 104 (257) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEECSE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCE T ss_conf 89999999999999999964989089999789988657776798642000135677666789998753699599997884 Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHH-HHCC--CCHHHHHHH-HHCCCCHHHHHHCCCCCEEECC Q ss_conf 7777542113320002204674012------15544224-4215--601225655-4203884899978996526228 Q gi|254780588|r 200 GGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAAS-ILWR--DSSRAAQAA-IAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 200 g~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~As-ILwk--d~~~a~eAA-ealklTa~DL~~lGiID~II~E 267 (317) +.+||..-...||.+++.+++.|+. +.|.+.++ .|-+ ...++.+.. ..-.++|.++++.|+||+|++. T Consensus 105 a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 182 (257) T 2ej5_A 105 AAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPL 182 (257) T ss_dssp EETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEEECG T ss_pred EEHHHHHHHHHCCEEEECCCCEEECHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCEEEEECH T ss_conf 646889999850689836887898343261868860399999999574026678641798988899878963897287 No 39 >3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A Probab=98.12 E-value=0.00014 Score=52.08 Aligned_cols=138 Identities=14% Similarity=0.215 Sum_probs=94.1 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCC--------CHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 77683689999999999997-199489999535324-677843--------00279999999888623799889999616 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAE--------ARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE--------~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) ..++++=.+-....++.+++ -.+-+|-+--.++.+ .|.+-. ...........+..+..+..|+|+.|-|- T Consensus 22 Nals~~~~~~l~~al~~~~~d~~v~~vvl~~~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa~v~G~ 101 (254) T 3gow_A 22 NAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGV 101 (254) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCE T ss_conf 89999999999999999976889389999678987565630565214523578999999999999971999899998784 Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHH-HHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 7777542113320002204674012------15544224-4215--6012256-554203884899978996526228 Q gi|254780588|r 200 GGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAAS-ILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 200 g~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~As-ILwk--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) +.+||..-...||.++|.+++.|+. +.|.++.+ +|.+ ...++.+ .-..-.++++++++.|+||+|++. T Consensus 102 a~GgG~~la~~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~~~ltg~~~~a~eA~~~Glv~~vv~~ 179 (254) T 3gow_A 102 AAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPA 179 (254) T ss_dssp EETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG T ss_pred EEHHHHHHHHCCCEEEECCCCEEECHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCEECHHHHHHCCCEEEEECC T ss_conf 212548877525515873887898611075768752499999998676679999863953259999987997998273 No 40 >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Probab=98.12 E-value=0.00011 Score=52.62 Aligned_cols=160 Identities=13% Similarity=0.124 Sum_probs=94.5 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCC-CCCC---------CCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 7683689999999999997-1994899995353246-7784---------300279999999888623799889999616 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAYP-GVDA---------EARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~~-g~~a---------E~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) ..+++-++-....++.++. -.+-+|-|--.+++|. |.+- +..-......+.+..+.....|+|++|-|- T Consensus 39 al~~~~~~el~~~l~~~~~d~~v~~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~g~ 118 (257) T 1szo_A 39 VWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP 118 (257) T ss_dssp EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 99999999999999999749995499996688762157644332344411477889999999999870897189997135 Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEE-------ECHHHHHHHHCC---CCHHHHHHH-HHCCCCHHHHHHCCCCCEEECCC Q ss_conf 7777542113320002204674012-------155442244215---601225655-42038848999789965262288 Q gi|254780588|r 200 GGSGGAMGIAAANFVYMLEHAIYSV-------ISPEGAASILWR---DSSRAAQAA-IAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 200 g~sGGA~a~~~~d~v~m~~~s~ysv-------isPEg~AsILwk---d~~~a~eAA-ealklTa~DL~~lGiID~II~EP 268 (317) .++|+.+++ .||.+++.+++.|.. +.|.+.++-+|. ...++.+.. ..-.++++++++.|+||+|++. T Consensus 119 ~~GG~~lal-~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~- 196 (257) T 1szo_A 119 VTNAPEIPV-MSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSE- 196 (257) T ss_dssp BCSSTHHHH-TSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHHHHHTTCEEEHHHHHHHTSCSEEECH- T ss_pred CCEEEEEEC-CCCEEEECCCCEEECCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEEECH- T ss_conf 550577505-776489858886753773244647765421110776089999989863981639999856998877676- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 984448989999999999999999985899899999 Q gi|254780588|r 269 IGGAHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304 (317) Q Consensus 269 ~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~ 304 (317) +.+.....+-...+.+.++..+.. T Consensus 197 ------------~~l~~~a~~~a~~l~~~~~~a~~~ 220 (257) T 1szo_A 197 ------------QELLPRAWELARGIAEKPLLARRY 220 (257) T ss_dssp ------------HHHHHHHHHHHHHHHTSCHHHHHH T ss_pred ------------HHHHHHHHHHHHHHHCCCHHHHHH T ss_conf ------------899999999999998489999999 No 41 >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium 104} Probab=98.10 E-value=0.00018 Score=51.18 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=100.0 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCC----------HH-- Q ss_conf 0089998458775023442026776836899999999999971-99489999535324-6778430----------02-- Q gi|254780588|r 108 QPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEA----------RG-- 173 (317) Q Consensus 108 ~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~----------~G-- 173 (317) -+|++|-=+ |+.+ -..++++-++-....++.+++- .+-+|-+--++.++ .|.+-.+ .. T Consensus 19 G~Va~itln-------rP~~-~Nal~~~~~~~l~~~l~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 90 (267) T 3oc7_A 19 GPVARLTLN-------SPHN-RNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMA 90 (267) T ss_dssp SSEEEEEEC-------CGGG-TSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHH T ss_pred CCEEEEEEC-------CCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHH T ss_conf 878999973-------8886-79989999999999999996599955999978899774898779875324430246778 Q ss_pred --HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHH Q ss_conf --799999998886237998899996167777542113320002204674012------1554422442156---01225 Q gi|254780588|r 174 --QGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAA 242 (317) Q Consensus 174 --~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~ 242 (317) ......+.+..+..+.+|+|+.|-|...+||+.-...||.+++.+++.|+. +.|.+.++.++.- ...++ T Consensus 91 ~~~~~~~~~~~~~l~~~~kPvIa~v~G~a~GgG~~la~~~D~ria~~~a~f~~~~~~~Gl~p~~g~~~~~~~~~~~~~~~ 170 (267) T 3oc7_A 91 VERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAAR 170 (267) T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECEECCCCHHHHHHCCCCEECCCCCEEHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999999999977998899982766115337765123011177543112530207787301889999988999999 Q ss_pred HHHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 6554203884899978996526228 Q gi|254780588|r 243 QAAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 243 eAAealklTa~DL~~lGiID~II~E 267 (317) -.-..-.++++++++.|+||++.+| T Consensus 171 llltg~~~~a~eA~~~Glv~~v~e~ 195 (267) T 3oc7_A 171 YYLTGEKFDARRAEEIGLITMAAED 195 (267) T ss_dssp HHHHCCCBCHHHHHHHTSSSEECSS T ss_pred HHHCCCCCCHHHHHHCCCEEEECHH T ss_conf 9985897787999988985887604 No 42 >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Probab=98.10 E-value=6e-05 Score=54.62 Aligned_cols=140 Identities=14% Similarity=0.141 Sum_probs=93.1 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCC---------------CC-----HHHHHHHHHHHHHHHCC Q ss_conf 76836899999999999971-99489999535324-67784---------------30-----02799999998886237 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDA---------------EA-----RGQGEAIARATEMCLKL 188 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~a---------------E~-----~G~~~aia~~l~~~~~~ 188 (317) .++++-+.-....++.+++- .+=+|-+--++.+| .|.+- ++ ..........+..+... T Consensus 32 al~~~~~~~l~~al~~~~~d~~v~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 111 (280) T 1pjh_A 32 ALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKH 111 (280) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 98999999999999999749997699996699874388726888722345421110134789999999999999999968 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEECCCC-EEE------ECHHHHHHHHCCC---CHHHHHHH-HHCCCCHHHHHH Q ss_conf 998899996167777542113320002204674-012------1554422442156---01225655-420388489997 Q gi|254780588|r 189 QVPILSIIIGEGGSGGAMGIAAANFVYMLEHAI-YSV------ISPEGAASILWRD---SSRAAQAA-IAMKIIATDLQD 257 (317) Q Consensus 189 ~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~-ysv------isPEg~AsILwkd---~~~a~eAA-ealklTa~DL~~ 257 (317) ..|+|+.|-|.+.+||..-...||.+++.+++. ++. +.|.++++..|.. ..++.+.. ..-.++|+++++ T Consensus 112 ~kPvIaav~G~a~GgG~~lal~~D~ria~~d~~~~~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~eA~~ 191 (280) T 1pjh_A 112 SKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCE 191 (280) T ss_dssp CSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHHHHHHHTTCCEEHHHHHH T ss_pred CCCEEEEECCEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99989997781014664233221057764442342362016783887323211477735999999998399577999998 Q ss_pred CCCCCEEECCCCC Q ss_conf 8996526228898 Q gi|254780588|r 258 LSIIDGIIPEPIG 270 (317) Q Consensus 258 lGiID~II~EP~G 270 (317) +|+||+|++.|.. T Consensus 192 ~Glv~~vv~~~~~ 204 (280) T 1pjh_A 192 NGFISKNFNMPSS 204 (280) T ss_dssp TTCCSEECCCCTT T ss_pred CCCEEEEECCCHH T ss_conf 7994487487124 No 43 >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Probab=98.10 E-value=1.6e-05 Score=58.76 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=90.7 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-HH-HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 34420267768368999999999-99-97199489999535324677843002799999998886237998899996167 Q gi|254780588|r 123 SRIKHNFGSPRPEGYRKAVRLME-MA-DRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 123 ~~~~~n~G~~~p~g~rKa~r~~~-~A-~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) +|+-.-+|..+.+-....+.-+- |. +.-.-||-.+|++||-.. -.+-+|- -+|-..+.|+.++++|.. T Consensus 82 ~RIIfl~g~Idd~~a~~iiaqLl~Le~ed~~k~I~lyINSpGGsv-------~~GlaIy---D~m~~i~~~V~Tv~~G~A 151 (277) T 1tg6_A 82 ERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVV-------TAGLAIY---DTMQYILNPICTWCVGQA 151 (277) T ss_dssp TTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH-------HHHHHHH---HHHHHSCSCEEEEEEEEE T ss_pred CCEEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-------HHHHHHH---HHHHHCCCCCEEEEEEEE T ss_conf 688998987758999999999999866599987899997999568-------7899999---999854888569986322 Q ss_pred CCCCCCCCCCCCC--EEEECCCCEEEECHHHHH----HHHCCC-------------------CHHHHHHHHHCC----CC Q ss_conf 7775421133200--022046740121554422----442156-------------------012256554203----88 Q gi|254780588|r 201 GSGGAMGIAAANF--VYMLEHAIYSVISPEGAA----SILWRD-------------------SSRAAQAAIAMK----II 251 (317) Q Consensus 201 ~sGGA~a~~~~d~--v~m~~~s~ysvisPEg~A----sILwkd-------------------~~~a~eAAealk----lT 251 (317) +|=|++-++.++. -.|++||.+.+=.|.+.+ +=+... ....++..+.|. +| T Consensus 152 aSmaslIlaaG~kgkR~a~pns~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~TG~~~e~I~~~m~rD~~ms 231 (277) T 1tg6_A 152 ASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMS 231 (277) T ss_dssp ETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEEC T ss_pred CCHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 30567898726777103389987887258657775899999999999999999999999987939999998750684065 Q ss_pred HHHHHHCCCCCEEECCCCCCCC Q ss_conf 4899978996526228898444 Q gi|254780588|r 252 ATDLQDLSIIDGIIPEPIGGAH 273 (317) Q Consensus 252 a~DL~~lGiID~II~EP~GGAH 273 (317) |++.+++|+||+||..+.-.+. T Consensus 232 a~EA~eyGliD~Ii~~~~~~~~ 253 (277) T 1tg6_A 232 PMEAQEFGILDKVLVHPPQDGE 253 (277) T ss_dssp HHHHHHHTSCSEECSSCC---- T ss_pred HHHHHHCCCCCEEECCCCCCCC T ss_conf 9999983998789337876676 No 44 >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Probab=98.08 E-value=1.4e-05 Score=59.04 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=86.0 Q ss_pred CCCCCCHHHHHHHHHHHH-H-HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 267768368999999999-9-99719948999953532467784300279999999888623799889999616777754 Q gi|254780588|r 128 NFGSPRPEGYRKAVRLME-M-ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGA 205 (317) Q Consensus 128 n~G~~~p~g~rKa~r~~~-~-A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA 205 (317) -+|..+++-..+.+..+- + .+.-.-||-.++++||-.+- .+-+| .-.|-..+.|+.+++.|..+|-|+ T Consensus 32 l~~~Id~~~a~~ii~~L~~L~~~~~~k~I~l~InS~GG~v~-------~glaI---~d~i~~~~~~V~ti~~G~aaS~as 101 (208) T 2cby_A 32 LGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSIS-------AGMAI---YDTMVLAPCDIATYAMGMAASMGE 101 (208) T ss_dssp ECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHH-------HHHHH---HHHHHHCSSCEEEEEEEEEETHHH T ss_pred ECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH-------HHHHH---HHHHHHCCCCEEEEECCCCCCHHH T ss_conf 89836789999999999997451889980788679988787-------89999---999986599879996363543899 Q ss_pred CCCCCCC--CEEEECCCCEEEECHH----HHHHHHCCCC-------------------HHHHHHHHHC----CCCHHHHH Q ss_conf 2113320--0022046740121554----4224421560-------------------1225655420----38848999 Q gi|254780588|r 206 MGIAAAN--FVYMLEHAIYSVISPE----GAASILWRDS-------------------SRAAQAAIAM----KIIATDLQ 256 (317) Q Consensus 206 ~a~~~~d--~v~m~~~s~ysvisPE----g~AsILwkd~-------------------~~a~eAAeal----klTa~DL~ 256 (317) +-++.++ .-+|++||.+..=.|. |.++=+...+ ...++..+.| -+||++.+ T Consensus 102 lIl~aG~kg~R~~~pns~iMiHq~~~~~~G~~~di~~~a~el~~~~~~i~~iya~~Tg~~~e~I~~~~~rd~~lsa~EAl 181 (208) T 2cby_A 102 FLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEAL 181 (208) T ss_dssp HHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHH T ss_pred HHHHCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH T ss_conf 99867898956887986278888873667777689999999999999999999999795999999860688434599999 Q ss_pred HCCCCCEEECC Q ss_conf 78996526228 Q gi|254780588|r 257 DLSIIDGIIPE 267 (317) Q Consensus 257 ~lGiID~II~E 267 (317) ++|+||+||.. T Consensus 182 ~yGliD~Ii~~ 192 (208) T 2cby_A 182 EYGFVDHIITR 192 (208) T ss_dssp HHTSCSEECSC T ss_pred HCCCCCEEECC T ss_conf 84998798357 No 45 >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Probab=98.07 E-value=4.5e-05 Score=55.51 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=97.7 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-CC-CCCCCCCHH------------HHHHHHHHHHHHHCCC Q ss_conf 42026776836899999999999971-994899995353-24-677843002------------7999999988862379 Q gi|254780588|r 125 IKHNFGSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAG-AY-PGVDAEARG------------QGEAIARATEMCLKLQ 189 (317) Q Consensus 125 ~~~n~G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpG-a~-~g~~aE~~G------------~~~aia~~l~~~~~~~ 189 (317) +.+| .++++-++...+.++.++.- .+-+|-|.-..| ++ .|.+-.+-. ....+.+.+..+.++. T Consensus 26 p~~N--al~~~m~~eL~~al~~~~~d~~v~vvVl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 103 (289) T 3h0u_A 26 PPMN--LIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLP 103 (289) T ss_dssp TTTC--CBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCS T ss_pred CCCC--CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9868--89999999999999998539895699992789980114015454443201013433456789999999999689 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEE------ECHHHHHHHHCC---CCHHHHH-HHHHCCCCHHHHHHC Q ss_conf 9889999616777754211332000220-4674012------155442244215---6012256-554203884899978 Q gi|254780588|r 190 VPILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSV------ISPEGAASILWR---DSSRAAQ-AAIAMKIIATDLQDL 258 (317) Q Consensus 190 vP~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysv------isPEg~AsILwk---d~~~a~e-AAealklTa~DL~~l 258 (317) +|+|+.|-|...+||..-...||.+++. ++++|+. +.|.+.++.++. ...++.+ .-..-+++|+++++. T Consensus 104 kPvIaav~G~a~GgG~~lal~cD~~iaa~e~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~llltg~~~~a~eA~~~ 183 (289) T 3h0u_A 104 AVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERY 183 (289) T ss_dssp SEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHH T ss_pred CCEEEECCCCCCCCHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC T ss_conf 98998059952463037877177135635886153664465258886425777765109999999983994769999987 Q ss_pred CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH Q ss_conf 9965262288984448989999999999999999985899899999 Q gi|254780588|r 259 SIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304 (317) Q Consensus 259 GiID~II~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~ 304 (317) |+||+|+|. +.+.+...+....+.+.++..+.. T Consensus 184 Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~a~~~ 216 (289) T 3h0u_A 184 GWVNRAVPD-------------AELDEFVAGIAARMSGFPRDALIA 216 (289) T ss_dssp TSSSEEECH-------------HHHHHHHHHHHHHHHTSCHHHHHH T ss_pred CCCCEEECH-------------HHHHHHHHHHHHHHHCCCHHHHHH T ss_conf 997187188-------------799999999999998679999999 No 46 >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Probab=98.06 E-value=7e-05 Score=54.13 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=93.4 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCCCCC--------CCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 76836899999999999971994899995353---2467784--------300279999999888623799889999616 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIPVISFIDTAG---AYPGVDA--------EARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpG---a~~g~~a--------E~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) ..+++-.+-..+.++.++.-..-+|-|..+.| |-.|.+- +.......+.+.+..+.++.+|+|+.|-|- T Consensus 27 al~~~~~~~L~~al~~~~~~~~~~vVl~g~~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~ 106 (261) T 1ef8_A 27 ALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS 106 (261) T ss_dssp CCCHHHHHHHHHHHHHTCSTTCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCE T ss_conf 99999999999999997379987999971489974766877113434674302466999999999997799889997748 Q ss_pred CCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHHHHH-HCCCCHHHHHHCCCCCEEECC Q ss_conf 7777542113320002204674012------155442244215---6012256554-203884899978996526228 Q gi|254780588|r 200 GGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQAAI-AMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 200 g~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~eAAe-alklTa~DL~~lGiID~II~E 267 (317) ..+||..-...||.+++.+++.|.. +.|.+.++.++. ...++.+..= .-.++|++++++|+||+|+++ T Consensus 107 a~GgG~~lala~D~ria~~~a~f~~pe~~~G~~~~~g~~~~l~~~~G~~~a~~~~l~g~~~~a~eA~~~Glv~~v~~~ 184 (261) T 1ef8_A 107 VWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEV 184 (261) T ss_dssp EETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECH T ss_pred EEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCEECHHHHHHCCCCCEECCC T ss_conf 864010244534440000001235840001235564203244677173678999980984459999975992275680 No 47 >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Probab=98.05 E-value=2.2e-05 Score=57.78 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=88.5 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH-H-HHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 344202677683689999999999-9-97199489999535324677843002799999998886237998899996167 Q gi|254780588|r 123 SRIKHNFGSPRPEGYRKAVRLMEM-A-DRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 123 ~~~~~n~G~~~p~g~rKa~r~~~~-A-~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) +|+-.-+|..+.+-..+....+-. . +.-.-||..+|++||-.. .+.....-.|-.++.|+.+++.|-. T Consensus 45 ~RiIfL~g~Id~~~a~~iia~Ll~l~~~d~~k~I~l~INS~GG~v----------~~glaI~D~m~~~~~~V~Ti~~G~A 114 (218) T 1y7o_A 45 DRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSV----------SAGLAIVDTMNFIKADVQTIVMGMA 114 (218) T ss_dssp TTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCH----------HHHHHHHHHHHHSSSCEEEEEEEEE T ss_pred CCEEEECCEECHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCH----------HHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 688998989868999999999998885199987899982897868----------7899999999856998799996255 Q ss_pred CCCCCCCCCCC--CCEEEECCCCEEEECHHH----HHH--HHCCCCHHH-------------------HHHHH----HCC Q ss_conf 77754211332--000220467401215544----224--421560122-------------------56554----203 Q gi|254780588|r 201 GSGGAMGIAAA--NFVYMLEHAIYSVISPEG----AAS--ILWRDSSRA-------------------AQAAI----AMK 249 (317) Q Consensus 201 ~sGGA~a~~~~--d~v~m~~~s~ysvisPEg----~As--ILwkd~~~a-------------------~eAAe----alk 249 (317) +|-|++-++.+ ++.+|++||.+..-.|-+ -+. -.+...... ++..+ -.- T Consensus 115 aS~aslIl~aG~kg~R~~~pns~iMiHqp~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~a~~Tg~~~~~I~~~~~rd~~ 194 (218) T 1y7o_A 115 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNW 194 (218) T ss_dssp ETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCC T ss_pred CCHHHHHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCEE T ss_conf 44356898716888468745588883788556555531779999999999999999999998879799999986217906 Q ss_pred CCHHHHHHCCCCCEEECCC Q ss_conf 8848999789965262288 Q gi|254780588|r 250 IIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 250 lTa~DL~~lGiID~II~EP 268 (317) +||++.++.|+||+||.+. T Consensus 195 lsa~EAleyGliD~Ii~~~ 213 (218) T 1y7o_A 195 MSAQETLEYGFIDEIMANN 213 (218) T ss_dssp BCHHHHHHHTSCSEECCCC T ss_pred ECHHHHHHCCCCCEECCCC T ss_conf 5399999859986982468 No 48 >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Probab=98.03 E-value=0.00023 Score=50.51 Aligned_cols=138 Identities=17% Similarity=0.197 Sum_probs=92.6 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCC------------CHHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 76836899999999999971-99489999535324-677843------------00279999999888623799889999 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAE------------ARGQGEAIARATEMCLKLQVPILSII 196 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE------------~~G~~~aia~~l~~~~~~~vP~i~vv 196 (317) ..+++-++-..+.++.+++- ++-+|-+--+++.+ .|.+-. .......+.+.+..+..+..|+|++| T Consensus 22 al~~~~~~el~~~l~~~~~d~~v~~vvi~g~g~~f~~g~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaai 101 (253) T 1uiy_A 22 PLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV 101 (253) T ss_dssp CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 98999999999999999739996599997888664456406766412345530122321236689999996899889999 Q ss_pred ECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 6167777542113320002204674012------155442244215--60122565-54203884899978996526228 Q gi|254780588|r 197 IGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 197 ~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk--d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) -|-..+||..-...||.+++.+++.|+. +.|.+..+.|-+ ...++.+. -..-.++|+++++.|+||+|++. T Consensus 102 ~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~g~~~~~g~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 181 (253) T 1uiy_A 102 NGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPP 181 (253) T ss_dssp CSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECT T ss_pred CCEEEHHHHHHHHHCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCH T ss_conf 38576288999973478895455511574000622674599999998789999998732985779999867996386576 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 268 P 268 (317) Q Consensus 268 P 268 (317) . T Consensus 182 ~ 182 (253) T 1uiy_A 182 G 182 (253) T ss_dssp T T ss_pred H T ss_conf 8 No 49 >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Probab=98.03 E-value=0.00012 Score=52.57 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=92.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCC----CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 77683689999999999997199489999535324-6778----430027999999988862379988999961677775 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVD----AEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGG 204 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~----aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGG 204 (317) ...+++-++.....++.++.-.+-+|-|--.++++ .|.+ .+..............+..+..|+|+.|-|-+.+|| T Consensus 43 Nal~~~m~~eL~~~l~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG 122 (264) T 3he2_A 43 NALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAG 122 (264) T ss_dssp TCBCHHHHHHHHHHHHCC---CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETHH T ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEHHH T ss_conf 89899999999999997018995599996899851345454344430103589999999998589989999778564488 Q ss_pred CCCCCCCCCEEEECCCCEEE------ECHHH-HHHHHCC--CCHHHHHHH-HHCCCCHHHHHHCCCCCEEEC Q ss_conf 42113320002204674012------15544-2244215--601225655-420388489997899652622 Q gi|254780588|r 205 AMGIAAANFVYMLEHAIYSV------ISPEG-AASILWR--DSSRAAQAA-IAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 205 A~a~~~~d~v~m~~~s~ysv------isPEg-~AsILwk--d~~~a~eAA-ealklTa~DL~~lGiID~II~ 266 (317) ..-...||.+++.+++.|.. +.|.+ ....|+| ...++.+.. ..-+++|+++++.|+||+|.+ T Consensus 123 ~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~GLv~~v~~ 194 (264) T 3he2_A 123 LQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGT 194 (264) T ss_dssp HHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC T ss_pred HHHHHHCCEEEEECCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCCCCEECC T ss_conf 999984466652034445474012300677168889999819167789998389788899976894638546 No 50 >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomics, center for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Probab=98.02 E-value=9e-05 Score=53.35 Aligned_cols=138 Identities=19% Similarity=0.225 Sum_probs=95.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEC-CCCCCCCCC----------CCHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 776836899999999999971-9948999953-532467784----------3002799999998886237998899996 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDT-AGAYPGVDA----------EARGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDt-pGa~~g~~a----------E~~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ..++++-++-....++.+++- ++-+|-|.-. ++++.+-.- +.........+.+..+..+..|+|+.|- T Consensus 31 Nal~~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaaV~ 110 (265) T 3kqf_A 31 NSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAIN 110 (265) T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 99999999999999999864899569999658996132431255542000011000013565799999968988899996 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHH-HHCC--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------15544224-4215--60122565-54203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAAS-ILWR--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~As-ILwk--d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) |...+||+.-...||.+++.+++.|+. +.|.+.++ .|.+ ...++.+. -..-.++|+++++.|+||+|++. T Consensus 111 G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~llltg~~~~a~ea~~~Glv~~vv~~ 190 (265) T 3kqf_A 111 GIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPV 190 (265) T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG T ss_pred EEEEEHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEECCH T ss_conf 68951788998737889976998898864487208884288870887329999999984886788999974997676687 No 51 >2iex_A Dihydroxynapthoic acid synthetase; crotonase-like family, beta-BETA-alpha, coenzyme biosyntheses, naphthoate synthase; 2.20A {Geobacillus kaustophilus HTA426} PDB: 2uzf_A* Probab=98.02 E-value=3.8e-05 Score=56.03 Aligned_cols=137 Identities=15% Similarity=0.259 Sum_probs=92.0 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-CCCCCCCCC-HHH----------HHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 76836899999999999971-994899995353-246778430-027----------99999998886237998899996 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAG-AYPGVDAEA-RGQ----------GEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpG-a~~g~~aE~-~G~----------~~aia~~l~~~~~~~vP~i~vv~ 197 (317) .++++-++.....++.+++- .+-+|-+.-..+ +..|-+-.+ ... .......+..+.++..|+|+.|- T Consensus 35 als~~m~~~l~~al~~~~~d~~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~ 114 (272) T 2iex_A 35 AFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCSGGDQKVRGHGGYVGEDEIPRLNVLDLQRLIRVIPKPVIAMVA 114 (272) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBC---------------CCCTHHHHHHHHHHSSSCEEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 98999999999999998619995599984378654003771877603564202456777777899999839998999988 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------155442244215---60122565-54203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) |-..+||.--...||.+++.++++|+. +.|.++.+.++. ...++.+. -..-.+++++++++|+||+|.+. T Consensus 115 G~a~GgG~~lal~~D~ria~~~a~f~~pe~~lGl~p~~~~~~~l~r~vg~~~a~~lll~g~~i~a~eA~~~Glv~~v~~~ 194 (272) T 2iex_A 115 GYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAREIWYLCRQYTAQEALEMGLVNKVVPL 194 (272) T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEECG T ss_pred CEEEHHHHHHHHCCCCCEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECH T ss_conf 98437899998603644566887898750013407660157899999729999999970886569999767997698077 No 52 >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus HB8} SCOP: c.14.1.3 Probab=97.99 E-value=7.6e-05 Score=53.89 Aligned_cols=137 Identities=11% Similarity=0.093 Sum_probs=96.7 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCC-----------HHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 76836899999999999971-99489999535324-6778430-----------02799999998886237998899996 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEA-----------RGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~-----------~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) .++++-++-..+.++.++.- ++-+|-|--+++++ .|.+-.+ ....+.+.+.+..+.++..|+|+.|- T Consensus 33 al~~~~~~el~~~l~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 112 (264) T 1wz8_A 33 AMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVE 112 (264) T ss_dssp CBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 88999999999999998668998699997899984389975202554334778888899999999999978998999974 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------1554422442156---012256-554203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) |-..+||..-...||.+++.+++.|.. +.|.+..+.+|.. ..++.+ .-..-.+||+++++.|+||+|++. T Consensus 113 G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~ 192 (264) T 1wz8_A 113 KVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVED 192 (264) T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHHHHHHHTCCEEHHHHHHHTSSSEEECG T ss_pred CCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCH T ss_conf 84052888999864403011555432532111778884278999999988899999980996269999984996475287 No 53 >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula 19L} PDB: 2q34_A 2q2x_A Probab=97.99 E-value=5e-05 Score=55.21 Aligned_cols=136 Identities=17% Similarity=0.251 Sum_probs=89.5 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCCHHHHH----HHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 76836899999999999971-99489999535324-677843002799----9999988862379988999961677775 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEARGQGE----AIARATEMCLKLQVPILSIIIGEGGSGG 204 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~~G~~~----aia~~l~~~~~~~vP~i~vv~geg~sGG 204 (317) ..+++-++-..+.++.+++- .+-+|-|--.++++ .|.+-++-.... .+.+.+..+.++..|+|+.|-|-..+|| T Consensus 26 al~~~~~~el~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG 105 (243) T 2q35_A 26 GFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGG 105 (243) T ss_dssp BSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEECSEEETHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEECC T ss_conf 98999999999999999769896799997889844798844544202211378999999998489989999688577166 Q ss_pred CCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHHH-HHHCCCCHHHHHHCCCCCEEEC Q ss_conf 42113320002204674012------155442244215---60122565-5420388489997899652622 Q gi|254780588|r 205 AMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQA-AIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 205 A~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~eA-AealklTa~DL~~lGiID~II~ 266 (317) ..-...||.+++.++++|+. +.|.+..+.++. ...++.+. -..-.++|++++++|+||+|+| T Consensus 106 ~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 177 (243) T 2q35_A 106 LLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVS 177 (243) T ss_dssp HHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTCSSCEEC T ss_pred CHHCCCCCEEEECCCCEECCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEECCC T ss_conf 620204667875243433165003145556764112122345388877650389898999997799407088 No 54 >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics, protein structure initiative; 1.58A {Legionella pneumophila subsp} Probab=97.98 E-value=0.00019 Score=51.03 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=90.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-CCCCCCCCC------------HHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 776836899999999999971-994899995353-246778430------------027999999988862379988999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAG-AYPGVDAEA------------RGQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpG-a~~g~~aE~------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317) ...+++-.+-..+.++.+++- .+=+|-+--.+. |..|.+-.+ ........+.+..+..+..|+|+. T Consensus 26 Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaa 105 (268) T 3i47_A 26 NAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAM 105 (268) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 99999999999999999974999069999167776335641554311122210000246788999999998489878999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC--CHHHHH-HHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 96167777542113320002204674012------1554422442156--012256-55420388489997899652622 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD--SSRAAQ-AAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd--~~~a~e-AAealklTa~DL~~lGiID~II~ 266 (317) |-|-..+||..-...||.+++.+++.|+. +.|.+..+.+.+- ..++.+ .-..-+++|+++++.|+||+|+| T Consensus 106 v~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 185 (268) T 3i47_A 106 VQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISPYVVRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVP 185 (268) T ss_dssp ECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEEC T ss_pred ECCEEEECCCHHHCCCCEEECCCCCEEECCEEEEEECCCCCHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEC T ss_conf 67858505521110442456279979987424566457642132220345667899876089788899977798108608 No 55 >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, alternative splicing, fatty acid metabolism, enoyl coenzyme A hydratase; 2.3A {Homo sapiens} Probab=97.96 E-value=0.00052 Score=47.99 Aligned_cols=154 Identities=13% Similarity=0.134 Sum_probs=95.2 Q ss_pred EECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCC----------C Q ss_conf 75380089998458775023442026776836899999999999971-99489999535324-677843----------0 Q gi|254780588|r 104 RFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAE----------A 171 (317) Q Consensus 104 ~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE----------~ 171 (317) .+|| |+.|-- +|+.+ ...++++-++-....++-+++- .+-+|-+-=+++++ .|.+-. . T Consensus 39 ~~DG--Va~Itl-------nrP~~-~Nals~~~~~~l~~~l~~~~~d~~v~vvvltg~g~~F~aG~Dl~~~~~~~~~~~~ 108 (287) T 2vx2_A 39 QLDG--IRNIVL-------SNPKK-RNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYH 108 (287) T ss_dssp EETT--EEEEEE-------CCGGG-TTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHH T ss_pred EECC--EEEEEE-------CCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCHHHHH T ss_conf 3088--899997-------48887-7999999999999999998508996699997889986477541222000012466 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC--CCHHHHH Q ss_conf 02799999998886237998899996167777542113320002204674012------155442244215--6012256 Q gi|254780588|r 172 RGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR--DSSRAAQ 243 (317) Q Consensus 172 ~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk--d~~~a~e 243 (317) .-....+...+..+..+.+|+|+.|-|...+||..-...||.+++.+++.|+. +.|-.-.+-|+| ...++.+ T Consensus 109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~l~r~lg~~~a~~ 188 (287) T 2vx2_A 109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALE 188 (287) T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHHHHTTSCHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCCCEECCCCEEECHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 77776799999999728987799968866166788876056453778868987111527078722788999999999999 Q ss_pred H-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 5-54203884899978996526228 Q gi|254780588|r 244 A-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 244 A-AealklTa~DL~~lGiID~II~E 267 (317) . -..-.++|+++++.|+||+|+|. T Consensus 189 llltg~~~~a~eA~~~GLv~~vv~~ 213 (287) T 2vx2_A 189 MLFTGEPISAQEALLHGLLSKVVPE 213 (287) T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECG T ss_pred HHHCCCCCCHHHHHHCCCEEEECCH T ss_conf 9983994788999878770261786 No 56 >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Probab=97.96 E-value=0.00026 Score=50.10 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=88.7 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEE-CCCCC-CCCCC---------CCHHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 76836899999999999971-994899995-35324-67784---------30027999999988862379988999961 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFID-TAGAY-PGVDA---------EARGQGEAIARATEMCLKLQVPILSIIIG 198 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvD-tpGa~-~g~~a---------E~~G~~~aia~~l~~~~~~~vP~i~vv~g 198 (317) .++++-++.....++.+++- .+-+|-|.= -+++| .|.+- +.......+.+.+..+..+..|+|+.|-| T Consensus 27 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa~v~G 106 (260) T 1sg4_A 27 SLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAING 106 (260) T ss_dssp EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 89999999999999999858995599998289994528997655421010012221256789999975589978998567 Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEE--------CHHHHHH-HHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 677775421133200022046740121--------5544224-4215--6012256-55420388489997899652622 Q gi|254780588|r 199 EGGSGGAMGIAAANFVYMLEHAIYSVI--------SPEGAAS-ILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 199 eg~sGGA~a~~~~d~v~m~~~s~ysvi--------sPEg~As-ILwk--d~~~a~e-AAealklTa~DL~~lGiID~II~ 266 (317) ...+||.--...||.+++.+++-|..- .|.+.++ .|-+ -..++.+ .-..-.++|.+++++|+||+|+| T Consensus 107 ~a~GgG~~la~~~D~ria~~~ak~~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 186 (260) T 1sg4_A 107 ACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVP 186 (260) T ss_dssp EBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHHHHHHTCCBCHHHHHHHTSSSEEEC T ss_pred CEECCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHCCCCEEECC T ss_conf 31056311110233234222232211132234486788104555777608999999998289887067754784046488 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 267 E 267 (317) Q Consensus 267 E 267 (317) . T Consensus 187 ~ 187 (260) T 1sg4_A 187 E 187 (260) T ss_dssp G T ss_pred H T ss_conf 6 No 57 >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Probab=97.94 E-value=0.00036 Score=49.07 Aligned_cols=139 Identities=12% Similarity=0.152 Sum_probs=93.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCC-CCCCCCC------H----HHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 7768368999999999999719-9489999535324-6778430------0----2799999998886237998899996 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFK-IPVISFIDTAGAY-PGVDAEA------R----GQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~-lPiv~lvDtpGa~-~g~~aE~------~----G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ..++++-++-..+.++.++.-. +-+|-+--.++++ .|.+-.+ . .......+.+..+..+..|+|+.|- T Consensus 48 Nals~~~~~eL~~al~~~~~d~~vrvvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 127 (286) T 3myb_A 48 NALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVH 127 (286) T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 89899999999999999974899569999569997137878899834676778888887778999999849998899988 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC--CHHHHH-HHHHCCCCHHHHHHCCCCCEEECCC Q ss_conf 167777542113320002204674012------1554422442156--012256-5542038848999789965262288 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD--SSRAAQ-AAIAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd--~~~a~e-AAealklTa~DL~~lGiID~II~EP 268 (317) |-+.+||.--...||.+++.+++.|+. +.|-.....|.+- ..++.+ .-..-.++|++++++|+||+|++.. T Consensus 128 G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~l~~~vG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 207 (286) T 3myb_A 128 GIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFCSTPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPK 207 (286) T ss_dssp SCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCHHHHHHHTTTSCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG T ss_pred CEEEHHHHHHHHHCCEEEECCCCEEECCCEEECCCCCCCCCCHHHHHCHHHHHHHHHCCCEECHHHHHHCCCCEECCCHH T ss_conf 98752668898716668976998898863015506787654147671899999995569755778998779974517867 No 58 >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Probab=97.94 E-value=0.00044 Score=48.50 Aligned_cols=137 Identities=14% Similarity=0.219 Sum_probs=90.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCC----HH----------HHHHHHHHHHHHHCCCCCEE Q ss_conf 776836899999999999971-99489999535324-6778430----02----------79999999888623799889 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEA----RG----------QGEAIARATEMCLKLQVPIL 193 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~----~G----------~~~aia~~l~~~~~~~vP~i 193 (317) ..++++-++.....++.++.- ++-+|-|--.++++ .|.+-.+ .+ ......+.+..+..+..|+| T Consensus 25 Nal~~~~~~el~~~l~~~~~d~~v~vvvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kp~I 104 (269) T 1nzy_A 25 NALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL 104 (269) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 89899999999999999985889169999799986357864887641345431156788888889999999996899999 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC---CHHH-HHHHHHCCCCHHHHHHCCCCCE Q ss_conf 9996167777542113320002204674012------1554422442156---0122-5655420388489997899652 Q gi|254780588|r 194 SIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD---SSRA-AQAAIAMKIIATDLQDLSIIDG 263 (317) Q Consensus 194 ~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd---~~~a-~eAAealklTa~DL~~lGiID~ 263 (317) +.|-|...+||..-...||.+++.+++.|.. +.|.+..+..+.. ..++ +-.-..-.++|++++++|+||+ T Consensus 105 aav~G~a~GgG~~lal~~D~ria~~~a~f~~~~~~~g~~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~ 184 (269) T 1nzy_A 105 AAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSR 184 (269) T ss_dssp EEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHTSCSC T ss_pred EEEHHHHCCCCHHHHHCCCHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHCCCCE T ss_conf 97330205640565541214456453011476542621578238999999809465312023489887999998099887 Q ss_pred EEC Q ss_conf 622 Q gi|254780588|r 264 IIP 266 (317) Q Consensus 264 II~ 266 (317) |++ T Consensus 185 vv~ 187 (269) T 1nzy_A 185 VYP 187 (269) T ss_dssp EEC T ss_pred ECC T ss_conf 548 No 59 >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Probab=97.94 E-value=0.00036 Score=49.12 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=97.8 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCC---------------HHHHHHHHHHHHHHHCCCCCEE Q ss_conf 7683689999999999997-199489999535324-6778430---------------0279999999888623799889 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEA---------------RGQGEAIARATEMCLKLQVPIL 193 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~---------------~G~~~aia~~l~~~~~~~vP~i 193 (317) .++++-++-....++.++. -.+-+|-|--.+++| .|.+-.+ .-........+..+..+..|+| T Consensus 29 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvI 108 (263) T 3l3s_A 29 PLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTI 108 (263) T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 99999999999999999758895699997899985867520213344445420024678999999999999986799889 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEE Q ss_conf 9996167777542113320002204674012------155442244215--6012256-554203884899978996526 Q gi|254780588|r 194 SIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGI 264 (317) Q Consensus 194 ~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk--d~~~a~e-AAealklTa~DL~~lGiID~I 264 (317) +.|-|-+.+||.--...||.+++.+++.|.. +.|-+....+.| -..++.+ +-..-.++|+++++.|+||+| T Consensus 109 aav~G~a~GgG~~lal~~D~ria~~~a~~~~p~~~~g~~~~~~~~~l~r~ig~~~a~~l~ltg~~i~a~eA~~~Glv~~v 188 (263) T 3l3s_A 109 ALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFCTTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRI 188 (263) T ss_dssp EEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCCHHHHHHHHTTSCHHHHHHHHHHCCEEEHHHHHHHTSSSEE T ss_pred EEECCCEECCCHHHHHCCCCCEECCCCEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCEE T ss_conf 98458076141634542233222102412164220611510133102334546666542265886689999986996386 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 228898444898999999999999999998589989999 Q gi|254780588|r 265 IPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIR 303 (317) Q Consensus 265 I~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li 303 (317) +|. +.+.....+-...+.+.++..+. T Consensus 189 v~~-------------~~l~~~a~~~a~~la~~~~~ai~ 214 (263) T 3l3s_A 189 LPE-------------AALATHVADLAGALAARNQAPLR 214 (263) T ss_dssp CCH-------------HHHHHHHHHHHHHHHSSCHHHHH T ss_pred CCH-------------HHHHHHHHHHHHHHHCCCHHHHH T ss_conf 288-------------89999999999999868999999 No 60 >3h02_A Naphthoate synthase; IDP00995, lyase, structural genomics, center for structural genomics of infectious diseases, csgid; 2.15A {Salmonella typhimurium} Probab=97.93 E-value=8.3e-05 Score=53.60 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=89.1 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCC-EEEEEECC-CCC-CCCCCCC-----------HHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 76836899999999999971994-89999535-324-6778430-----------0279999999888623799889999 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIP-VISFIDTA-GAY-PGVDAEA-----------RGQGEAIARATEMCLKLQVPILSII 196 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lP-iv~lvDtp-Ga~-~g~~aE~-----------~G~~~aia~~l~~~~~~~vP~i~vv 196 (317) ..+++-++-....++.++.-.-. +|-|.-.. .++ .|..-.+ ......+...+..+..+..|+|+.| T Consensus 50 als~~m~~eL~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~d~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIaav 129 (288) T 3h02_A 50 AFRPLTVKEMIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAMV 129 (288) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCC---------------CCCTHHHHHHHHHHCSSCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99999999999999999739996689998799974234630776643254420145655323689999970999899998 Q ss_pred ECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHH-HHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 6167777542113320002204674012------155442244215---6012256-55420388489997899652622 Q gi|254780588|r 197 IGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 197 ~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~e-AAealklTa~DL~~lGiID~II~ 266 (317) -|-+.+||+.-...||.+++.+++.|+. +.|.++.+.+|. ...++.+ +...-.++|+++++.|+||+|++ T Consensus 130 ~G~a~GgG~~la~~cD~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~ 209 (288) T 3h02_A 130 AGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVP 209 (288) T ss_dssp CSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSHHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSEEEC T ss_pred CCEEEEHHHHHHHHCCEEECCCCCEEECHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCEEEECC T ss_conf 89875063899873571041698589872442176786658999999848999999997598415999998899878546 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 267 E 267 (317) Q Consensus 267 E 267 (317) . T Consensus 210 ~ 210 (288) T 3h02_A 210 L 210 (288) T ss_dssp G T ss_pred H T ss_conf 3 No 61 >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Probab=97.92 E-value=0.00033 Score=49.37 Aligned_cols=137 Identities=16% Similarity=0.234 Sum_probs=90.2 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCCHHH--------------------HHHHHHHHHHHHCC Q ss_conf 7683689999999999997-199489999535324-6778430027--------------------99999998886237 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEARGQ--------------------GEAIARATEMCLKL 188 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~~G~--------------------~~aia~~l~~~~~~ 188 (317) .++++-.+-..+.++.++. -.+-+|-|--.++++ .|.+-.+.+. .....+.+..+..+ T Consensus 27 als~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 106 (275) T 1dci_A 27 AMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKC 106 (275) T ss_dssp CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHS T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999758996799996789874166438887401134542100025677888899999999999738 Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHH-HHCCC---CHHHHHHH-HHCCCCHHHHHH Q ss_conf 998899996167777542113320002204674012------15544224-42156---01225655-420388489997 Q gi|254780588|r 189 QVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAAS-ILWRD---SSRAAQAA-IAMKIIATDLQD 257 (317) Q Consensus 189 ~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~As-ILwkd---~~~a~eAA-ealklTa~DL~~ 257 (317) .+|+|+.|-|.+.+||..-...||.+++.+++.|+. +.|.+..+ .+++- ...+.+.. ..-.+||+++++ T Consensus 107 ~kPvIaav~G~a~GGG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~~~~~ll~~g~~~~a~eA~~ 186 (275) T 1dci_A 107 PKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALD 186 (275) T ss_dssp SSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGGTCSCHHHHHHHHHHCCEEEHHHHHH T ss_pred CCCEEEEECCEEEHHHHHHHHCCCEEEECCCCCEECCCEEECCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHH T ss_conf 99899998896230648987544651104787223632146456465627789998520666566662156668778876 Q ss_pred CCCCCEEECC Q ss_conf 8996526228 Q gi|254780588|r 258 LSIIDGIIPE 267 (317) Q Consensus 258 lGiID~II~E 267 (317) .|+||+|+|. T Consensus 187 ~Glv~~vv~~ 196 (275) T 1dci_A 187 SGLVSRVFPD 196 (275) T ss_dssp HTSSSEEESS T ss_pred CCCEEEEECC T ss_conf 8953697185 No 62 >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA; 1.80A {Geobacillus kaustophilus HTA426} PDB: 2qq3_A Probab=97.91 E-value=0.00022 Score=50.60 Aligned_cols=137 Identities=17% Similarity=0.220 Sum_probs=88.6 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCC-CCCCCCCCHH-----HHH--HHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 76836899999999999971-9948999953532-4677843002-----799--9999988862379988999961677 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGA-YPGVDAEARG-----QGE--AIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa-~~g~~aE~~G-----~~~--aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) .++++-.+-....++.+++- .+=+|-|--..+. ..|.+-.+.. ... ........+..+.+|+|+.|-|-.. T Consensus 28 al~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Iaai~G~a~ 107 (258) T 2pbp_A 28 ALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLAL 107 (258) T ss_dssp CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEEEECSEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE T ss_conf 99999999999999998609985899990798640127538877313211467777767889985189988999806576 Q ss_pred CCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHH-HCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 77542113320002204674012------155442244-215--6012256-554203884899978996526228 Q gi|254780588|r 202 SGGAMGIAAANFVYMLEHAIYSV------ISPEGAASI-LWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 202 sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsI-Lwk--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) +||..-...||.++|.+++.|+. +.|.+.++- |-| ...++.+ .-..-.+++++++++|+||+|+|. T Consensus 108 GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (258) T 2pbp_A 108 GGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSP 183 (258) T ss_dssp THHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEEECG T ss_pred EHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCEEEEECH T ss_conf 1668998627879987997898731156879872299999998689999999982997879999988990187257 No 63 >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Probab=97.88 E-value=0.00029 Score=49.79 Aligned_cols=138 Identities=15% Similarity=0.229 Sum_probs=90.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCC----------HHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 776836899999999999971-99489999535324-6778430----------02799999998886237998899996 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEA----------RGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~----------~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ..++++-.+-....++.+++- .+-+|-+--.++++ .|.+-.+ ..........+..+..+.+|+|+.|- T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvIaav~ 106 (261) T 3pea_A 27 NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH 106 (261) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 88999999999999999986889289999489997358874555410001110001222124677776624786899994 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHC-C--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------15544224421-5--60122565-54203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILW-R--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILw-k--d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) |-..+||..-...||.++|.+++.|+. +.|.++.+-.+ | ...++.+. -..-.++|++++++|+||+|++. T Consensus 107 G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (261) T 3pea_A 107 GAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAE 186 (261) T ss_dssp SEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSSSEEECG T ss_pred EEEEHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHCCCCCCCCCH T ss_conf 38862888877504559987999897873156768661399999999575523331221871449999864997767785 No 64 >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Probab=97.86 E-value=0.00044 Score=48.51 Aligned_cols=137 Identities=19% Similarity=0.241 Sum_probs=89.1 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCC-CCCCCCC---CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 7683689999999999997-19948999953532-4677843---00279999999888623799889999616777754 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGA-YPGVDAE---ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGA 205 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa-~~g~~aE---~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA 205 (317) .++++-.+.....++.+++ -.+.+|-+--++.. ..|..-. ..............+..+.+|+|+.|-|-+.+||+ T Consensus 29 al~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~ 108 (255) T 3p5m_A 29 AVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFGC 108 (255) T ss_dssp EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCEEEEHHH T ss_conf 98999999999999999749992799996667653357743012223431257799999981999899997898873778 Q ss_pred CCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHHHHH-HCCCCHHHHHHCCCCCEEECC Q ss_conf 2113320002204674012------155442244215---6012256554-203884899978996526228 Q gi|254780588|r 206 MGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQAAI-AMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 206 ~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~eAAe-alklTa~DL~~lGiID~II~E 267 (317) .-...||.+++.+++.|+. +.|.+.++-+.+ ....+.+..- .-.++++++++.|+||+|++. T Consensus 109 ~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~vv~~ 180 (255) T 3p5m_A 109 SLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSA 180 (255) T ss_dssp HHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHHHHHHCCCEEHHHHHHTTSCSEECCT T ss_pred HHHHHCCEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHCCCCCEEECH T ss_conf 998737889978998896772040646555763245544543100211113787889999876993488182 No 65 >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative; 2.00A {Acinetobacter baumannii atcc 17978} Probab=97.82 E-value=0.0011 Score=45.61 Aligned_cols=138 Identities=19% Similarity=0.267 Sum_probs=91.5 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCC-----------HHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 7683689999999999997-199489999535324-6778430-----------02799999998886237998899996 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEA-----------RGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~-----------~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) .++++-++-....++-+++ -++-+|-|.-.++++ .|.+-.+ ..........+..+.++..|+|+.|- T Consensus 28 al~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~ 107 (266) T 3fdu_A 28 ALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVK 107 (266) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEEC T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999999999999999758994699997898425157316665420013103444432589999999977998799863 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHH-HHHHHHCC--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------1554-42244215--60122565-54203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPE-GAASILWR--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPE-g~AsILwk--d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) |-..+||.--...||.+++.+++.|+. +.|. |.+..|.+ -..++.+. -..-.++|++++++|+||+|+++ T Consensus 108 G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~ 187 (266) T 3fdu_A 108 GVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVED 187 (266) T ss_dssp SEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHHHHHHHHCCEECHHHHHHTTSCSEECSC T ss_pred CEEEECCCEEECCCCCCEECCCCEEECCHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCEECHHHHHHCCCEEEECCC T ss_conf 84746452322152311114797897862532888211078999999550265321105856228889778972277784 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 268 P 268 (317) Q Consensus 268 P 268 (317) + T Consensus 188 ~ 188 (266) T 3fdu_A 188 A 188 (266) T ss_dssp H T ss_pred H T ss_conf 8 No 66 >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Probab=97.81 E-value=0.00039 Score=48.84 Aligned_cols=138 Identities=12% Similarity=0.185 Sum_probs=86.8 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCCCHHH---------HHH-----HHHHHHHHHCCCCCEE Q ss_conf 776836899999999999971-99489999535324-6778430027---------999-----9999888623799889 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAEARGQ---------GEA-----IARATEMCLKLQVPIL 193 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE~~G~---------~~a-----ia~~l~~~~~~~vP~i 193 (317) ..++++-.+-....++.+++- .+-+|-+--.++++ .|.+-.+-.. ... ....+..+..+.+|+| T Consensus 31 Nal~~~~~~~l~~al~~~~~d~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI 110 (276) T 2j5i_A 31 NAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTI 110 (276) T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCSSCEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 78899999999999999973999179999789886417887899864100221035666667778889999997899899 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCEEEE------CHHHHH-HHHCC--CCHHHHHHH-HHCCCCHHHHHHCCCCCE Q ss_conf 99961677775421133200022046740121------554422-44215--601225655-420388489997899652 Q gi|254780588|r 194 SIIIGEGGSGGAMGIAAANFVYMLEHAIYSVI------SPEGAA-SILWR--DSSRAAQAA-IAMKIIATDLQDLSIIDG 263 (317) Q Consensus 194 ~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvi------sPEg~A-sILwk--d~~~a~eAA-ealklTa~DL~~lGiID~ 263 (317) +.|-|...+||..-...||.++|.+++.|+.- .|.+.. ..|.+ ...++.+.. ..-++||.++++.|+||+ T Consensus 111 aav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~ 190 (276) T 2j5i_A 111 AMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNE 190 (276) T ss_dssp EEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHHHHHHHHHCCEEEHHHHHHHTSSSE T ss_pred EECCCCEEHHHHHHHHCCCHHEECCCCCEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHCCCCCE T ss_conf 94699450043487753441006788840033232324886117999999828145545530588787468997299347 Q ss_pred EECC Q ss_conf 6228 Q gi|254780588|r 264 IIPE 267 (317) Q Consensus 264 II~E 267 (317) |+|. T Consensus 191 vv~~ 194 (276) T 2j5i_A 191 SVPL 194 (276) T ss_dssp EECH T ss_pred ECCC T ss_conf 6381 No 67 >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Probab=97.81 E-value=0.00019 Score=51.04 Aligned_cols=137 Identities=14% Similarity=0.201 Sum_probs=89.5 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCC-------CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 76836899999999999971-99489999535324-67784-------30027999999988862379988999961677 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDA-------EARGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~a-------E~~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) .++++-++-..+.++.+++- .+-+|-|--.+..+ .|-.- ........+...+..+..+..|+|+.|-|... T Consensus 33 al~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIa~i~G~a~ 112 (263) T 3moy_A 33 ALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYAL 112 (263) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHCCCCCEEEEECCCCH T ss_conf 98999999999999987328981699986785454167633542035631022201210023430499979999886153 Q ss_pred CCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 77542113320002204674012------155442244215---6012256-554203884899978996526228 Q gi|254780588|r 202 SGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 202 sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) +||..-...||.+++.+++.|+. +.|.++.+-++. ...++.+ +-..-.+++++++++|+||+|++. T Consensus 113 GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 188 (263) T 3moy_A 113 GGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPA 188 (263) T ss_dssp THHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECG T ss_pred HHHHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECC T ss_conf 9999999978999982998998964180658550289999998529999999982997889999987996795042 No 68 >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Probab=97.80 E-value=0.00085 Score=46.46 Aligned_cols=136 Identities=16% Similarity=0.078 Sum_probs=88.2 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCC------------------------------------ Q ss_conf 77683689999999999997-199489999535324-6778430------------------------------------ Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEA------------------------------------ 171 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~------------------------------------ 171 (317) ..++++-++-....++.++. -.+-+|-|-=.+.++ .|.+-.+ T Consensus 57 Nals~~m~~el~~~l~~~~~d~~vrviVltG~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (333) T 3njd_A 57 NAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDP 136 (333) T ss_dssp TCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHHTTCSSSCCCH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH T ss_conf 89999999999999999972999459999789998558887688761232334554200011101455420354223452 Q ss_pred ---HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHH------HHCC--CCHH Q ss_conf ---0279999999888623799889999616777754211332000220467401215544224------4215--6012 Q gi|254780588|r 172 ---RGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAAS------ILWR--DSSR 240 (317) Q Consensus 172 ---~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~As------ILwk--d~~~ 240 (317) .-......+.+..+..+.+|+|+.|-|-+.+||..-...||.++|.+++.|+. ||.--- .|++ -..+ T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lal~~D~ria~~~a~f~~--pe~~~G~~p~~~~l~r~iG~~~ 214 (333) T 3njd_A 137 MVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGY--PPMRVWGVPAAGLWAHRLGDQR 214 (333) T ss_dssp HHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEEEC--GGGGTTCCCTTCCHHHHHCHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCEECCCCCEEEECCCCEEEC--CCEEECCCCCCCHHHHHHCHHH T ss_conf 67899999999999999958998899978878624331103577799879988988--7044126775205656515798 Q ss_pred HHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 2565-54203884899978996526228 Q gi|254780588|r 241 AAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 241 a~eA-AealklTa~DL~~lGiID~II~E 267 (317) +.+. -..-.++|+++++.|+||+|+|. T Consensus 215 A~~llltg~~i~A~eA~~~Glv~~vv~~ 242 (333) T 3njd_A 215 AKRLLFTGDCITGAQAAEWGLAVEAPDP 242 (333) T ss_dssp HHHHHTTCCEEEHHHHHHTTSSSBCCCG T ss_pred HHHHHHHCCCCHHHHHHHCCCEEEECCH T ss_conf 9999860883029999987990196287 No 69 >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metabolism, lipid metabolism, lyase; 1.80A {Mycobacterium tuberculosis} Probab=97.80 E-value=0.00011 Score=52.82 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=93.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCC-CCCCCCCC-------HHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 7768368999999999999719-948999953532-46778430-------02799999998886237998899996167 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRFK-IPVISFIDTAGA-YPGVDAEA-------RGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f~-lPiv~lvDtpGa-~~g~~aE~-------~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) ..++++-++.....++.+++-. +-+|-+--.+++ ..|.+-.+ ........+.+..+..+..|+|+.|-|.. T Consensus 47 Nal~~~~~~~l~~al~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvIa~v~G~a 126 (278) T 3h81_A 47 NALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYA 126 (278) T ss_dssp TCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEECBEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEE T ss_conf 89999999999999999975888489999479874003675787652111121367888887775348998999980727 Q ss_pred CCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHC-C--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECCC Q ss_conf 777542113320002204674012------15544224421-5--6012256-5542038848999789965262288 Q gi|254780588|r 201 GSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILW-R--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 201 ~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILw-k--d~~~a~e-AAealklTa~DL~~lGiID~II~EP 268 (317) .+||+--...||.+++.+++.|+. +.|.+..+-.+ | ...++.+ +-..-.++|++++++|+||+|++.+ T Consensus 127 ~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 204 (278) T 3h81_A 127 LGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPAD 204 (278) T ss_dssp ETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGG T ss_pred CHHHHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHH T ss_conf 179899999789999839988978511816686413999999984899999999829967899999869972500067 No 70 >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.05A {Streptomyces coelicolor A3} Probab=97.79 E-value=0.00064 Score=47.33 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=89.7 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-CCCCCCCCC-------------HHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 76836899999999999971-994899995353-246778430-------------027999999988862379988999 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAG-AYPGVDAEA-------------RGQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpG-a~~g~~aE~-------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317) .++++-++-....++.+++- .+-+|-+--.+. +..|-+-.+ ........+.+..+..+.+|+|+. T Consensus 40 als~~~~~el~~al~~~~~d~~v~~vVitg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaa 119 (279) T 3g64_A 40 ALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAA 119 (279) T ss_dssp CBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 98999999999999999609995799994798736812505754311210002455555555666667887199989999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEE------ECH-HHHHHHHC-C--CCHHHH-HHHHHCCCCHHHHHHCCCCCEE Q ss_conf 96167777542113320002204674012------155-44224421-5--601225-6554203884899978996526 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISP-EGAASILW-R--DSSRAA-QAAIAMKIIATDLQDLSIIDGI 264 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysv------isP-Eg~AsILw-k--d~~~a~-eAAealklTa~DL~~lGiID~I 264 (317) |-|-..+||.--...||.+++.+++.|+. +.| .+.++.++ | ...++. -+-..-.++|+++++.|+||+| T Consensus 120 v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~~g~~~~l~r~iG~~~a~~l~l~g~~i~a~eA~~~Glv~~v 199 (279) T 3g64_A 120 LHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISEL 199 (279) T ss_dssp ECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTCCSEE T ss_pred ECCEEEHHHHHHHHHCCEEECCCCCEEECCHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCCCCC T ss_conf 78965303289987346764164565536211028476522399999998485799999981899989999974995403 Q ss_pred ECC Q ss_conf 228 Q gi|254780588|r 265 IPE 267 (317) Q Consensus 265 I~E 267 (317) +|. T Consensus 200 v~~ 202 (279) T 3g64_A 200 TEE 202 (279) T ss_dssp CCT T ss_pred CCH T ss_conf 587 No 71 >3ome_A Enoyl-COA hydratase; ssgcid, structural genomics, structural genomics center for infectious disease, lyase; 2.05A {Mycobacterium smegmatis str} Probab=97.79 E-value=0.00036 Score=49.14 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=87.4 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCC-------CCHHH-------HHHHHHHHHHHHCCCCCEEE Q ss_conf 7683689999999999997-199489999535324-67784-------30027-------99999998886237998899 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDA-------EARGQ-------GEAIARATEMCLKLQVPILS 194 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~a-------E~~G~-------~~aia~~l~~~~~~~vP~i~ 194 (317) .++++-.+-..+.++.++. -.+.+|-|-=++..+ .|.+- +..+. .......+..+..+.+|+|+ T Consensus 46 als~~~~~eL~~al~~~~~d~~v~~vVltg~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa 125 (282) T 3ome_A 46 AQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRGGGEVPEKISLEFIIQHEARRYLDYTLRWRNVPKPSIA 125 (282) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC-------CCCHHHHHHHHHHHTTHHHHHHHHCSSCEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 99999999999999999868891799982687740135224312444433202455788999999999999819998999 Q ss_pred EEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC-CHHHHH-HHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 996167777542113320002204674012------1554422442156-012256-55420388489997899652622 Q gi|254780588|r 195 IIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD-SSRAAQ-AAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 195 vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd-~~~a~e-AAealklTa~DL~~lGiID~II~ 266 (317) .|-|.+.+||..-...||.+++.++++|+. +.|-+.+...++- ..++.+ .-..-.++|+++++.|+||+|+| T Consensus 126 av~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~~~~~l~~~~g~~~A~~llltG~~~~a~eA~~~Glv~~vv~ 205 (282) T 3ome_A 126 AVQGRCISGGLLLCWPCDLILASDDALFSDPVALMGIGGVEYHGHTWELGPRKAKEILFTGRALTAEEAERTGMVNRVVA 205 (282) T ss_dssp EECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSCSSCCHHHHHCHHHHHHHHHHCCEEEHHHHHHHTSCSEEEC T ss_pred EECCCCCHHHHHHHHHCCHHHHCCCCEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEC T ss_conf 96583132689997600415535576763452356106430257888861789999997288567999865499667417 No 72 >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure initiative; 2.00A {Rhodopseudomonas palustris} Probab=97.75 E-value=4.3e-05 Score=55.62 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=88.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CCCCCC---------CHHHHHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 7683689999999999997199489999535324-677843---------002799999998886237998899996167 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY-PGVDAE---------ARGQGEAIARATEMCLKLQVPILSIIIGEG 200 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~-~g~~aE---------~~G~~~aia~~l~~~~~~~vP~i~vv~geg 200 (317) .++++-++-..+.++-++ -++-+|-|--++++| .|.+-. ..-....+.+.+..+..+..|+|+.|-|-. T Consensus 39 al~~~~~~~L~~al~~~d-~~~rvvvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a 117 (275) T 3hin_A 39 ALNDGLMAALKDCLTDIP-DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKGAV 117 (275) T ss_dssp CBCHHHHHHHHHHTSSCC-TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSEE T ss_pred CCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEE T ss_conf 989999999999998416-6884899967899745888367753200123355667899999999718998899986877 Q ss_pred CCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 777542113320002204674012------155442244215---6012256-554203884899978996526228 Q gi|254780588|r 201 GSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 201 ~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) .+||..-...||.+++.+++.|.. +.|.+..+..+. -..++.+ .-..-.++|++++++|+||+|++. T Consensus 118 ~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~iG~~~a~~l~ltg~~~~A~eA~~~Glv~~vv~~ 194 (275) T 3hin_A 118 IGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIEN 194 (275) T ss_dssp ETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEESS T ss_pred EHHHHHHHHHCCCCHHHHHCHHHHHHCEEEECCCHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCH T ss_conf 42889999822613375523324221106225654888889987054677667640896869999983996876682 No 73 >3p85_A Enoyl-COA hydratase; ssgcid, mycobacerium avium, structural seattle structural genomics center for infectious disease,; HET: 1PE; 1.90A {Mycobacterium avium} Probab=97.70 E-value=0.00016 Score=51.68 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=95.6 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC Q ss_conf 77683689999999999997-199489999535324-6778430027999999988862379988999961677775421 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMG 207 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a 207 (317) ..++++-.+.....++-+++ -.+-+|-|.-.++++ .|.+-.+.............+..+..|+|+.|-|-+.+||..- T Consensus 47 Nal~~~~~~el~~al~~~~~d~~vr~vvltg~g~~F~aG~dl~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~l 126 (270) T 3p85_A 47 NALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAGLDLKELGGSSALPDISPRWPALTKPVIGAINGAAVTGGLEL 126 (270) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC------CCCCCCCCCCSSCEEEEECSEEETHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHH T ss_conf 99899999999999999975989169999799867246751454122113456899998689999999889755077999 Q ss_pred CCCCCCEEEECCCCEEE------ECHHHHH-HHHCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 13320002204674012------1554422-44215--6012256-554203884899978996526228 Q gi|254780588|r 208 IAAANFVYMLEHAIYSV------ISPEGAA-SILWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 208 ~~~~d~v~m~~~s~ysv------isPEg~A-sILwk--d~~~a~e-AAealklTa~DL~~lGiID~II~E 267 (317) ...||.+++.+++.|+. +.|.+.. ..|.+ ...++.+ .-..-++++.+++++|+||+|+|. T Consensus 127 al~~D~ria~~~a~f~~pe~~lGl~p~~g~~~~l~~~ig~~~a~~llltg~~~~a~eA~~~Glv~~vv~~ 196 (270) T 3p85_A 127 ALYCDILIASENARFADTHARVGLLPTWGLSVRLPQKVGIGLARRMSLTGDYLSAADALRAGLVTEVVPH 196 (270) T ss_dssp HHHSSEEEEETTCEEECCTTTTTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECG T ss_pred HHHCCEEEECCCCEEECHHHHHCCCCCCCCCEEEEECCCCCHHHCCCCCCCCCCHHHHHHCCCEEEEECH T ss_conf 8626758966887798856751877665753232001232021111003785878999877991297187 No 74 >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Probab=97.68 E-value=0.00016 Score=51.55 Aligned_cols=138 Identities=14% Similarity=0.179 Sum_probs=91.1 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCC----C---HHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 76836899999999999971-99489999535324-677843----0---027999999988862379988999961677 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAE----A---RGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE----~---~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) .++++-.+-....++.+++- .+-+|-+.-.++++ .|.+-. . ......+.+.+..+..+.+|+|+.|-|-.. T Consensus 30 als~~~~~~L~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaai~G~a~ 109 (260) T 1mj3_A 30 ALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYAL 109 (260) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEE T ss_conf 99999999999999999858990799997799953278765653235314567889999998852599829999887561 Q ss_pred CCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCC---CCHHH-HHHHHHCCCCHHHHHHCCCCCEEECCC Q ss_conf 77542113320002204674012------155442244215---60122-565542038848999789965262288 Q gi|254780588|r 202 SGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWR---DSSRA-AQAAIAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 202 sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwk---d~~~a-~eAAealklTa~DL~~lGiID~II~EP 268 (317) +||..-...||.++|-+++.|+. +.|.++.+-.+. -..++ +-+-..-.++|++++++|+||+|++.. T Consensus 110 GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 186 (260) T 1mj3_A 110 GGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVE 186 (260) T ss_dssp THHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECTT T ss_pred HHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCEEEECHH T ss_conf 99999999789999769988989501506586413999999984289999996538714778898789817872325 No 75 >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Streptomyces avermitilis} Probab=97.63 E-value=0.00063 Score=47.39 Aligned_cols=141 Identities=19% Similarity=0.173 Sum_probs=85.0 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECC-CCCC-CCCCCCH---HHH-----------HHHHHHHHHHH Q ss_conf 442026776836899999999999971-99489999535-3246-7784300---279-----------99999988862 Q gi|254780588|r 124 RIKHNFGSPRPEGYRKAVRLMEMADRF-KIPVISFIDTA-GAYP-GVDAEAR---GQG-----------EAIARATEMCL 186 (317) Q Consensus 124 ~~~~n~G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtp-Ga~~-g~~aE~~---G~~-----------~aia~~l~~~~ 186 (317) |+.+| .++++-++-..+.++.++.- .+-+|-|.=.. .|+. |.+-.+. ... ..+...+..+. T Consensus 26 rP~~N--al~~~~~~~L~~al~~~~~d~~vr~vVl~g~g~~ffs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (287) T 3gkb_A 26 NPPVN--VIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIR 103 (287) T ss_dssp CTTTT--CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHH T ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 89858--8999999999999999986899459999678988550032788765200103333210778899999999998 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCEEE-ECCCCEEE------ECHH-HHHHHHCC--CCHHHHH-HHHHCCCCHHHH Q ss_conf 379988999961677775421133200022-04674012------1554-42244215--6012256-554203884899 Q gi|254780588|r 187 KLQVPILSIIIGEGGSGGAMGIAAANFVYM-LEHAIYSV------ISPE-GAASILWR--DSSRAAQ-AAIAMKIIATDL 255 (317) Q Consensus 187 ~~~vP~i~vv~geg~sGGA~a~~~~d~v~m-~~~s~ysv------isPE-g~AsILwk--d~~~a~e-AAealklTa~DL 255 (317) .+.+|+|+.|-|-+.+||..-...||.+++ -++++|+. +.|. |....|-+ -..++.+ +-..-.++|+++ T Consensus 104 ~~pkPvIaav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~a~eA 183 (287) T 3gkb_A 104 HQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETA 183 (287) T ss_dssp HCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHH T ss_pred HCCCCEEEEECCCEEEECCHHCCCCCCCCCCHHHHCCCCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH T ss_conf 39998899957947860511210466343210100135741134658864689999997188889999865884468999 Q ss_pred HHCCCCCEEEC Q ss_conf 97899652622 Q gi|254780588|r 256 QDLSIIDGIIP 266 (317) Q Consensus 256 ~~lGiID~II~ 266 (317) +++|+||+|+| T Consensus 184 ~~~Glv~~vv~ 194 (287) T 3gkb_A 184 ASYGWINRALP 194 (287) T ss_dssp HHHTSSSEEEC T ss_pred HHCCCCEEEEC T ss_conf 98599049838 No 76 >1q52_A MENB; lyase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.14.1.3 PDB: 1q51_A 1rjm_A* 1rjn_A* Probab=97.59 E-value=0.0015 Score=44.76 Aligned_cols=137 Identities=12% Similarity=0.180 Sum_probs=87.2 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEE------------CCCCCCCCCCC----------------CHHHHHHHHHH Q ss_conf 76836899999999999971-994899995------------35324677843----------------00279999999 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFID------------TAGAYPGVDAE----------------ARGQGEAIARA 181 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvD------------tpGa~~g~~aE----------------~~G~~~aia~~ 181 (317) .++++-++-....++.++.- .+-+|-|.= +.|++...-.+ .+.....+... T Consensus 60 Al~~~m~~eL~~al~~~~~d~~vrvvVltG~~~~~~sgG~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (314) T 1q52_A 60 AFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEV 139 (314) T ss_dssp CCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHH T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 98999999999999999749997589995788766552102334767566531244433334201266788888999999 Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCC-EEE------ECHHHH-HHHHCC--CCHHHHHH-HHHCCC Q ss_conf 8886237998899996167777542113320002204674-012------155442-244215--60122565-542038 Q gi|254780588|r 182 TEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAI-YSV------ISPEGA-ASILWR--DSSRAAQA-AIAMKI 250 (317) Q Consensus 182 l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~-ysv------isPEg~-AsILwk--d~~~a~eA-Aealkl 250 (317) +..+..+..|+|+.|-|-..+||..-...||.+++.+++. |+. +.|.+. ...|.+ -..++.+. -..-++ T Consensus 140 ~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ias~~a~~f~~pe~~lGl~p~~g~~~~L~~~vG~~~A~~llltg~~i 219 (314) T 1q52_A 140 QRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTY 219 (314) T ss_dssp HHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCCSTTTHHHHHHHCHHHHHHHHHHCCEE T ss_pred HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99998589988999837661021388761231121003777664440458788850699999985699999999858988 Q ss_pred CHHHHHHCCCCCEEECC Q ss_conf 84899978996526228 Q gi|254780588|r 251 IATDLQDLSIIDGIIPE 267 (317) Q Consensus 251 Ta~DL~~lGiID~II~E 267 (317) +|+++++.|+||+|++. T Consensus 220 ~a~eA~~~Glv~~vv~~ 236 (314) T 1q52_A 220 TAEQMHQMGAVNAVAEH 236 (314) T ss_dssp CHHHHHHHTSCSEEECG T ss_pred CHHHHHCCCCEEEECCH T ss_conf 88897307832796387 No 77 >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.30A {Shewanella oneidensis mr-1} Probab=97.54 E-value=0.0076 Score=39.69 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=98.2 Q ss_pred EEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC--CC-CCCCCCC---- Q ss_conf 9998875380089998458775023442026776836899999999999971994899995353--24-6778430---- Q gi|254780588|r 99 QIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAG--AY-PGVDAEA---- 171 (317) Q Consensus 99 i~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpG--a~-~g~~aE~---- 171 (317) .--+..-+|+.|++|-= +|+.. -..++++-++...+.++.++.-.---+-++...| +| .|-+--+ T Consensus 41 ~~~~~~~~~~~Vg~ItL-------NRP~~-lNAl~~~m~~~l~~~l~~~~~d~~v~~vVl~g~G~kaFcAG~Dl~~l~~~ 112 (407) T 3ju1_A 41 FQTLATASGKLVGVVTL-------NVEKA-LNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHA 112 (407) T ss_dssp EEEEECTTSCEEEEEEE-------CCGGG-TSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHH T ss_pred EEEEEECCCCCEEEEEE-------CCCCC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHHC T ss_conf 89972037984899998-------17886-78989999999999999997498957999980799971078188988513 Q ss_pred ------------HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHH Q ss_conf ------------02799999998886237998899996167777542113320002204674012------155442244 Q gi|254780588|r 172 ------------RGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASI 233 (317) Q Consensus 172 ------------~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsI 233 (317) +.......+....+.....|+|+.|-|-..+||.--...||.+++.+++.|+. +.|.+.++- T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~riate~a~f~~pe~~iGl~P~~G~s~ 192 (407) T 3ju1_A 113 SVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSY 192 (407) T ss_dssp HHHHTSSCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCCCCCCCCCCCCCCCEEECHHHCEEECCCCHHHH T ss_conf 33333430158999999888999999855993899976702045520002456465589879832341454279811546 Q ss_pred HCCCC--HHH-HHHHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 21560--122-56554203884899978996526228 Q gi|254780588|r 234 LWRDS--SRA-AQAAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 234 Lwkd~--~~a-~eAAealklTa~DL~~lGiID~II~E 267 (317) +.+-- ..+ .-+--.-+++|.|+++.|++|+|+|. T Consensus 193 ~~~~~~~~~~~~l~ltG~~i~a~eA~~~Glv~~vv~~ 229 (407) T 3ju1_A 193 FLNRMPGKMGLFLGLTAYHMNAADACYVGLADHYLNR 229 (407) T ss_dssp HTTTSSTTHHHHHHHHCCCBCHHHHHHHTSCSEECCG T ss_pred HHHHCCHHHHHHHHHHCCCCCHHHHHHCCCCEEECCH T ss_conf 7462352888898865897765789874974175386 No 78 >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabolism, lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus HTA426} Probab=97.53 E-value=0.002 Score=43.83 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=87.4 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEE-CCCCC-CCCCCC---------CHHHHHHHHHHHHHHHCCCCCE Q ss_conf 42026776836899999999999971-994899995-35324-677843---------0027999999988862379988 Q gi|254780588|r 125 IKHNFGSPRPEGYRKAVRLMEMADRF-KIPVISFID-TAGAY-PGVDAE---------ARGQGEAIARATEMCLKLQVPI 192 (317) Q Consensus 125 ~~~n~G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvD-tpGa~-~g~~aE---------~~G~~~aia~~l~~~~~~~vP~ 192 (317) +++| ..+++-++-....++.++.- .+-+|-+.- -+.++ .|.+-. ..-......+.+..+..+..|+ T Consensus 27 pk~N--al~~~m~~~l~~~l~~~~~d~~vr~vil~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpv 104 (265) T 2ppy_A 27 NKSN--SYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVY 104 (265) T ss_dssp STTC--CBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSSEE T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE T ss_conf 9989--99999999999999999849996599996178960567852102101005678899998889999986089878 Q ss_pred EEEEECCCCCCCCCCCCCCCCEEE-ECCCCEEE------ECHHHHHHHHCC---CCHHHHH-HHHHCCCCHHHHHHCCCC Q ss_conf 999961677775421133200022-04674012------155442244215---6012256-554203884899978996 Q gi|254780588|r 193 LSIIIGEGGSGGAMGIAAANFVYM-LEHAIYSV------ISPEGAASILWR---DSSRAAQ-AAIAMKIIATDLQDLSII 261 (317) Q Consensus 193 i~vv~geg~sGGA~a~~~~d~v~m-~~~s~ysv------isPEg~AsILwk---d~~~a~e-AAealklTa~DL~~lGiI 261 (317) |+.|-|-..+||..-...||.+++ -+.+.|+. +.|.++.+-++. ...++.+ +-..-.++|++.+++|+| T Consensus 105 Iaav~G~a~GgG~~lal~~D~ri~~~~~a~~~~pe~~~Gl~p~~~~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv 184 (265) T 2ppy_A 105 IACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLV 184 (265) T ss_dssp EEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCCBCHHHHHHHTSS T ss_pred EEEECCEECCCCCEEECCCCEEEEECCCCCCCCCCCEECCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHCCCE T ss_conf 99981723368634410242689951542344720356778885689999998589999999975997789999986992 Q ss_pred CEEECCC Q ss_conf 5262288 Q gi|254780588|r 262 DGIIPEP 268 (317) Q Consensus 262 D~II~EP 268 (317) |+|++.. T Consensus 185 ~~v~~~~ 191 (265) T 2ppy_A 185 NRVFPQA 191 (265) T ss_dssp SEEECGG T ss_pred EEECCHH T ss_conf 4634828 No 79 >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Probab=97.46 E-value=0.00058 Score=47.64 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=89.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEEC-CCCCC-CCCCC---------CHHHHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 776836899999999999971-9948999953-53246-77843---------002799999998886237998899996 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDT-AGAYP-GVDAE---------ARGQGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDt-pGa~~-g~~aE---------~~G~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ..++++-++-....++.+++- .+-+|-+.-. ++++. |-.-. .........+.+..+..+..|+|+.|- T Consensus 34 Nal~~~~~~el~~~l~~~~~d~~~~~vVl~g~g~~~F~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~ 113 (272) T 1hzd_A 34 NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAID 113 (272) T ss_dssp TCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEES T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999999999999999985999649999627887113551000110012034456677899999999978998999978 Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHH-HHHHCC--CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECC Q ss_conf 167777542113320002204674012------155442-244215--60122565-54203884899978996526228 Q gi|254780588|r 198 GEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGA-ASILWR--DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 198 geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~-AsILwk--d~~~a~eA-AealklTa~DL~~lGiID~II~E 267 (317) |-+.+||..-...||.+++.+++.|+. +.|.+. ...|-+ ...++.+. -..-.++|++++++|+||+|++. T Consensus 114 G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~lll~g~~i~a~eA~~~Glv~~vv~~ 193 (272) T 1hzd_A 114 GLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 193 (272) T ss_dssp EEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTCEEEHHHHHHHTSCSEEECC T ss_pred CEECCCCCEEECCCCHHHHCCCCEEECCCCCEEECCCCCCCEEECHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEECC T ss_conf 80335775110030322306898897754265136752441043034439999878612884689999757972698486 No 80 >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Probab=97.41 E-value=0.0002 Score=50.97 Aligned_cols=163 Identities=9% Similarity=0.096 Sum_probs=98.6 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCC---------CC-HHHHHHHHHHHHHHHCCCCCEEEEEEC Q ss_conf 76836899999999999971-99489999535324-67784---------30-027999999988862379988999961 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDA---------EA-RGQGEAIARATEMCLKLQVPILSIIIG 198 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~a---------E~-~G~~~aia~~l~~~~~~~vP~i~vv~g 198 (317) ..+++-.+-....++.+++- .+-+|-|--.++++ .|.+- +. +-....+......+....+|+|+.|-| T Consensus 35 als~~~~~~l~~~l~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIa~v~G 114 (258) T 3lao_A 35 AFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQG 114 (258) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECS T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 98999999999999999739996599997799866158746652533303567766533348999987389988999818 Q ss_pred CCCCCCCCCCCCCCCEEEECCCCEEEE------CHHHHHHHHCC---CCHHHHHH-HHHCCCCHHHHHHCCCCCEEECCC Q ss_conf 677775421133200022046740121------55442244215---60122565-542038848999789965262288 Q gi|254780588|r 199 EGGSGGAMGIAAANFVYMLEHAIYSVI------SPEGAASILWR---DSSRAAQA-AIAMKIIATDLQDLSIIDGIIPEP 268 (317) Q Consensus 199 eg~sGGA~a~~~~d~v~m~~~s~ysvi------sPEg~AsILwk---d~~~a~eA-AealklTa~DL~~lGiID~II~EP 268 (317) ...+||+.-...||.+++.++++|+.- .|.+.++.++. ...++.+. -..-.++|+++++.|+||+|++.. T Consensus 115 ~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~r~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 194 (258) T 3lao_A 115 TCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPG 194 (258) T ss_dssp EEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHHHHHHTTCCCEEHHHHHHTTSCSEEECTT T ss_pred EEECCCCHHHHCCCHHHHHHCCEEECHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCC T ss_conf 26037644310335221301367716433007884200688888884678999884128805699997779920884820 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 98444898999999999999999998589989999999 Q gi|254780588|r 269 IGGAHRNPAQTISSVGEIISQFLSETSTYSETEIREHR 306 (317) Q Consensus 269 ~GGAHrd~~~~~~~lk~~i~~~L~~L~~~~~~~Li~~R 306 (317) +. .....+..+.+.+.++..+...+ T Consensus 195 ------~l-------~~~a~~~a~~l~~~~~~a~~~~k 219 (258) T 3lao_A 195 ------EE-------LARALEYAERIARAAPLAVRAAL 219 (258) T ss_dssp ------CH-------HHHHHHHHHHHHHSCHHHHHHHH T ss_pred ------HH-------HHHHHHHHHHHHHCCHHHHHHHH T ss_conf ------89-------99999999987625999999999 No 81 >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, quercetin, structural genomics consortium, SGC, alternative splicing; HET: QUE; 1.50A {Homo sapiens} Probab=97.35 E-value=0.0033 Score=42.24 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=87.6 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCC-CC-CCCCC---------CC---HHHHHHHHHHHHHHHCCCCCEEE Q ss_conf 776836899999999999971-994899995353-24-67784---------30---02799999998886237998899 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAG-AY-PGVDA---------EA---RGQGEAIARATEMCLKLQVPILS 194 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpG-a~-~g~~a---------E~---~G~~~aia~~l~~~~~~~vP~i~ 194 (317) ..++++-.+-..+.++.++.- .+-+|-+.-+.| ++ .|.+- +. ..........+..+..+..|+|+ T Consensus 28 Nal~~~m~~eL~~~l~~~~~d~~v~~vvltga~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa 107 (363) T 3bpt_A 28 NALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVA 107 (363) T ss_dssp TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 89999999999999999984999769999668998211781678774122332100367776776899999968998998 Q ss_pred EEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHH-HCCCC-HHH-HHHHHHCCCCHHHHHHCCCCCEEE Q ss_conf 996167777542113320002204674012------155442244-21560-122-565542038848999789965262 Q gi|254780588|r 195 IIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASI-LWRDS-SRA-AQAAIAMKIIATDLQDLSIIDGII 265 (317) Q Consensus 195 vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsI-Lwkd~-~~a-~eAAealklTa~DL~~lGiID~II 265 (317) .|-|-..+||.--...||.+++.+++.|+. +.|.+.++. |.|=. ..+ .-+-..-+++|+++++.|+||+|+ T Consensus 108 av~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~Gl~P~~g~~~~l~rl~g~~a~~l~ltg~~~~a~eA~~~Glv~~vv 187 (363) T 3bpt_A 108 LIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFV 187 (363) T ss_dssp EECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHHHHHHHHCCCEETHHHHHTTSCSEEC T ss_pred ECCCCEEECCHHHHCCCEEEECCCCCEEECCHHCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEC T ss_conf 06994735125552033131038974892413221468887602342103369999999848974399999859970863 Q ss_pred CC Q ss_conf 28 Q gi|254780588|r 266 PE 267 (317) Q Consensus 266 ~E 267 (317) |. T Consensus 188 ~~ 189 (363) T 3bpt_A 188 DS 189 (363) T ss_dssp CG T ss_pred CH T ss_conf 85 No 82 >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Probab=97.26 E-value=0.0045 Score=41.28 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=85.9 Q ss_pred CCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCC------------HHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 77683689999999999997-199489999535324-6778430------------027999999988862379988999 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEA------------RGQGEAIARATEMCLKLQVPILSI 195 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~------------~G~~~aia~~l~~~~~~~vP~i~v 195 (317) ...+++-.+-....++-++. -.+-+|-|.-.+++| .|.+-.+ ........+.+..+.++.+|+|+. T Consensus 30 Nal~~~~~~el~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIAa 109 (715) T 1wdk_A 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAA 109 (715) T ss_dssp CBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 79899999999999999974889769999888997165809898963557886788876789999999998499989999 Q ss_pred EECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHH--------CC---CCHHHH-HHHHHCCCCHHHHHHCCCCCE Q ss_conf 961677775421133200022046740121554422442--------15---601225-655420388489997899652 Q gi|254780588|r 196 IIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASIL--------WR---DSSRAA-QAAIAMKIIATDLQDLSIIDG 263 (317) Q Consensus 196 v~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsIL--------wk---d~~~a~-eAAealklTa~DL~~lGiID~ 263 (317) |-|-..+||.--...||.+++.+++.|+. ||----|. +- ...++. -.-..-.+++.+++++|+||+ T Consensus 110 i~G~a~GgG~elalacD~ria~~~a~f~~--pev~lGl~p~~gg~~~l~r~iG~~~a~~l~ltg~~~~a~eA~~~Glvd~ 187 (715) T 1wdk_A 110 INGIALGGGLEMCLAADFRVMADSAKIGL--PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187 (715) T ss_dssp ECSCEETHHHHHHHTSSEEEEETTCEEEC--GGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHTTSSSE T ss_pred ECCHHHHHHHHHHHHCCEEEEECCCEEEC--HHHHHCCCCCCCCCEECHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCC T ss_conf 78633299999999789999829989988--6776388888774455101024367888630233404999998599742 Q ss_pred EECC Q ss_conf 6228 Q gi|254780588|r 264 IIPE 267 (317) Q Consensus 264 II~E 267 (317) |+|+ T Consensus 188 vv~~ 191 (715) T 1wdk_A 188 VVTA 191 (715) T ss_dssp EECG T ss_pred CCCH T ss_conf 4888 No 83 >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Probab=97.18 E-value=0.00095 Score=46.11 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=61.7 Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHH-HHCC--CCHHHHH-HHHHCCCC Q ss_conf 8886237998899996167777542113320002204674012------15544224-4215--6012256-55420388 Q gi|254780588|r 182 TEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAAS-ILWR--DSSRAAQ-AAIAMKII 251 (317) Q Consensus 182 l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~As-ILwk--d~~~a~e-AAealklT 251 (317) +..+..+.+|+|+.|-|-..+||..-...||.+++.+++.|+. +.|.++++ .|-| ...++.+ +-..-+++ T Consensus 133 ~~~~~~~~kP~IAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~ 212 (305) T 3m6n_A 133 FHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLEGNLYS 212 (305) T ss_dssp HHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHTTTSCHHHHHHHHHHCCEEE T ss_pred HHHHHCCCCCEEEEECCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCC T ss_conf 99975699989999887050899999998547705344313570430588988535899998606999999996589998 Q ss_pred HHHHHHCCCCCEEECC Q ss_conf 4899978996526228 Q gi|254780588|r 252 ATDLQDLSIIDGIIPE 267 (317) Q Consensus 252 a~DL~~lGiID~II~E 267 (317) |+++++.|+||+|+|. T Consensus 213 a~eA~~~Glv~~vv~~ 228 (305) T 3m6n_A 213 AEQLLGMGLVDRVVPR 228 (305) T ss_dssp HHHHHHHTSCSEEECT T ss_pred HHHHHHCCCCEEEECH T ss_conf 9999877993087185 No 84 >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Probab=97.13 E-value=0.0001 Score=53.01 Aligned_cols=136 Identities=18% Similarity=0.105 Sum_probs=85.6 Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCCEEEEEE--------------CCCCCCC-----C----CCCCHHHHHHHHHHH---- Q ss_conf 76836899999999999971-994899995--------------3532467-----7----843002799999998---- Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADRF-KIPVISFID--------------TAGAYPG-----V----DAEARGQGEAIARAT---- 182 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~f-~lPiv~lvD--------------tpGa~~g-----~----~aE~~G~~~aia~~l---- 182 (317) ..+++-++-....++.++.- .+=+|-|-= +.|++.. . +...+.....+.+.+ T Consensus 190 Als~~m~~eL~~al~~~~~D~~VrvVVLtGa~~~~~~~~gGr~FcAG~DL~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (440) T 2np9_A 190 AEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVL 269 (440) T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999629996499996888666657888877548199988616776421566654567889998876 Q ss_pred --------HHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHHHCCC--CHHHHH-HH Q ss_conf --------886237998899996167777542113320002204674012------1554422442156--012256-55 Q gi|254780588|r 183 --------EMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASILWRD--SSRAAQ-AA 245 (317) Q Consensus 183 --------~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsILwkd--~~~a~e-AA 245 (317) ..+.++..|+|++|-|-..+||.--...||.+++.++++|+. |.|.+.+..|+|- ..++.+ .- T Consensus 270 ~~~~~~~~~~~~~~~KPvIAaVnG~A~GGG~eLalacD~rIAae~A~F~lPe~~lGi~Pg~gs~~L~r~vG~~~A~ellL 349 (440) T 2np9_A 270 TNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAANLRLGRFAGPRVSRQVIL 349 (440) T ss_dssp CCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEEECCEEECCCCEEECCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCHHHHHHHHH T ss_conf 55467999999848998899966845617650123755020030130258654451288702879999859999999997 Q ss_pred HHCCCCHHHHHHCCCCCEEEC Q ss_conf 420388489997899652622 Q gi|254780588|r 246 IAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 246 ealklTa~DL~~lGiID~II~ 266 (317) ..-.++|+++++.|+||+|+| T Consensus 350 tG~~isA~EA~~~GLV~eVVp 370 (440) T 2np9_A 350 EGRRIWAKEPEARLLVDEVVE 370 (440) T ss_dssp HCCCEETTSGGGGGTCSEEEC T ss_pred CCCCCCHHHHHHCCCCEEECC T ss_conf 499177999997698507768 No 85 >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Probab=97.10 E-value=0.0018 Score=44.07 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 89999999999997199--4899995353246778430027999999988862379988999961677775421133200 Q gi|254780588|r 136 GYRKAVRLMEMADRFKI--PVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213 (317) Q Consensus 136 g~rKa~r~~~~A~~f~l--Piv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~ 213 (317) |+....+.++-|.+-.- -||--||+||-.+ .+++.|.+.+..+....-|+|+.+-+-++|||.+.-..||+ T Consensus 323 ~~~~~~~~l~~a~~d~~vkavvLrInSpGGs~-------~as~~i~~~i~~~k~~~KPVv~~~~~~aASggY~ia~~ad~ 395 (593) T 3bf0_A 323 GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSV-------TASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANY 395 (593) T ss_dssp EHHHHHHHHHHHHHCTTEEEEEEEEEEEEECH-------HHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSE T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCH-------HHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCE T ss_conf 61788999986650754217999997989857-------78999999999998549978999878664155576533674 Q ss_pred EEEECCCCEE-------------------------------------EECHHHHHHHH------C----------C--CC Q ss_conf 0220467401-------------------------------------21554422442------1----------5--60 Q gi|254780588|r 214 VYMLEHAIYS-------------------------------------VISPEGAASIL------W----------R--DS 238 (317) Q Consensus 214 v~m~~~s~ys-------------------------------------visPEg~AsIL------w----------k--d~ 238 (317) ++|-++++.. .++||.-+.+- | | +. T Consensus 396 I~A~p~titGSIGV~~~~~~~~~~~~k~Gi~~~~v~~g~~~~~~~~~~~~~e~~~~~q~~~~~~y~~F~~~Va~~R~~~~ 475 (593) T 3bf0_A 396 IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTP 475 (593) T ss_dssp EEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH T ss_pred EEECCCCEEEECCEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 78668651442220475156888888679536665435567678666799899999999999999999999986369996 Q ss_pred HHHHHHHHHCCCCHHHHHHCCCCCEEE Q ss_conf 122565542038848999789965262 Q gi|254780588|r 239 SRAAQAAIAMKIIATDLQDLSIIDGII 265 (317) Q Consensus 239 ~~a~eAAealklTa~DL~~lGiID~II 265 (317) +...+.|..--.|+.+.+++|+||+|- T Consensus 476 ~~v~~ia~Grv~tg~~A~~~GLVD~iG 502 (593) T 3bf0_A 476 EQIDKIAQGHVWTGQDAKANGLVDSLG 502 (593) T ss_dssp HHHHTTCTTCEEEHHHHHHHTSCSEEC T ss_pred HHHHHHCCCCEEEHHHHHHCCCCCCCC T ss_conf 787875587588789998869975459 No 86 >2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus} Probab=97.06 E-value=0.0041 Score=41.61 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=87.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCC-CCCCCC---CHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 776836899999999999971-99489999535324-677843---0027999999988862379988999961677775 Q gi|254780588|r 130 GSPRPEGYRKAVRLMEMADRF-KIPVISFIDTAGAY-PGVDAE---ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGG 204 (317) Q Consensus 130 G~~~p~g~rKa~r~~~~A~~f-~lPiv~lvDtpGa~-~g~~aE---~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGG 204 (317) ...+++-.+-....++.++.- .+=+|-|.-.++.| .|.+-. .......+...+..+.++..|+|+.|-|-+.+|| T Consensus 27 Nal~~~~~~~l~~~l~~~~~d~~v~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG 106 (727) T 2x58_A 27 NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGGG 106 (727) T ss_dssp TCBCHHHHHHHHHHHHHHHSCTTCCEEEEEESTTCSBCCBCGGGCSSSCSCSHHHHHHHHHHTCSSCEEEEECSEEETHH T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHH T ss_conf 78999999999999999864899769999898997556808575653590579999999999499989999884532999 Q ss_pred CCCCCCCCCEEEECCCCEEE------ECHHHHHHH-HCC--CCHHH-HHHHHHCCCCHHHHHHCCCCCEEECC Q ss_conf 42113320002204674012------155442244-215--60122-56554203884899978996526228 Q gi|254780588|r 205 AMGIAAANFVYMLEHAIYSV------ISPEGAASI-LWR--DSSRA-AQAAIAMKIIATDLQDLSIIDGIIPE 267 (317) Q Consensus 205 A~a~~~~d~v~m~~~s~ysv------isPEg~AsI-Lwk--d~~~a-~eAAealklTa~DL~~lGiID~II~E 267 (317) .--...||..++.+++.|+. |.|.++.+- |.| ...++ +-.-..-.++|.+.+++|+||.|.+. T Consensus 107 ~elalacD~ria~~~a~~g~pev~lGl~p~~ggt~~l~r~iG~~~a~~l~l~g~~~~a~~A~~~Glvd~v~~~ 179 (727) T 2x58_A 107 LELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKS 179 (727) T ss_dssp HHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCCEEEHHHHHTTTSCSEEESS T ss_pred HHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCC T ss_conf 9999965989975997998830051618861699999885257789998753787878999865997176475 No 87 >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Probab=96.90 E-value=0.0016 Score=44.48 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=86.2 Q ss_pred CCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCC-CCCCCCC------------HHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 7683689999999999997-199489999535324-6778430------------0279999999888623799889999 Q gi|254780588|r 131 SPRPEGYRKAVRLMEMADR-FKIPVISFIDTAGAY-PGVDAEA------------RGQGEAIARATEMCLKLQVPILSII 196 (317) Q Consensus 131 ~~~p~g~rKa~r~~~~A~~-f~lPiv~lvDtpGa~-~g~~aE~------------~G~~~aia~~l~~~~~~~vP~i~vv 196 (317) .++++-.+-....++.++. -.+-+|-|.-.++.| .|.+-.+ ......+...+..+..+.+|+|+.| T Consensus 30 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav 109 (725) T 2wtb_A 30 SLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAI 109 (725) T ss_dssp CCCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 79999999999999999658997699998889980307374747523467766788888899999999981999899998 Q ss_pred ECCCCCCCCCCCCCCCCEEEECCCCEEE------ECHHHHHHH-HCC--CCHHHHH-HHHHCCCCHHHHHHCCCCCEEEC Q ss_conf 6167777542113320002204674012------155442244-215--6012256-55420388489997899652622 Q gi|254780588|r 197 IGEGGSGGAMGIAAANFVYMLEHAIYSV------ISPEGAASI-LWR--DSSRAAQ-AAIAMKIIATDLQDLSIIDGIIP 266 (317) Q Consensus 197 ~geg~sGGA~a~~~~d~v~m~~~s~ysv------isPEg~AsI-Lwk--d~~~a~e-AAealklTa~DL~~lGiID~II~ 266 (317) -|-+.+||.--...||.+++.+++.|.. +.|.+..+- |-| ...++.+ +-..-.++|+++++.|+||+|++ T Consensus 110 ~G~a~GGG~elalacD~ria~~~a~fg~PEv~lGl~P~~gg~~~L~r~iG~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (725) T 2wtb_A 110 DGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189 (725) T ss_dssp CSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHCCCEEHHHHHHHTSCSEECC T ss_pred CCEEEHHHHHHHHHCCEEEEECCCEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEECC T ss_conf 87350899999996898997199799880353084787114578888745788999987267754566530554024325 Q ss_pred C Q ss_conf 8 Q gi|254780588|r 267 E 267 (317) Q Consensus 267 E 267 (317) . T Consensus 190 ~ 190 (725) T 2wtb_A 190 P 190 (725) T ss_dssp T T ss_pred C T ss_conf 3 No 88 >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Probab=96.29 E-value=0.013 Score=38.03 Aligned_cols=83 Identities=16% Similarity=0.224 Sum_probs=54.4 Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHH-----------HHHHCC---CCHHHHH-HHHHC Q ss_conf 86237998899996167777542113320002204674012155442-----------244215---6012256-55420 Q gi|254780588|r 184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGA-----------ASILWR---DSSRAAQ-AAIAM 248 (317) Q Consensus 184 ~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~-----------AsILwk---d~~~a~e-AAeal 248 (317) .+....+|+|+.|-|-+.+||.--...||.+++..+.-.++--||-. ...+.+ ...++.+ +...- T Consensus 124 ~~~~~~kPvIAAVnG~A~GGG~eLALaCD~rIavad~~a~~~lPEv~~lGl~PG~ggt~R~~l~r~VG~a~A~ellltGe 203 (556) T 2w3p_A 124 SSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVE 203 (556) T ss_dssp HHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSS T ss_pred HHHHCCCCEEEEECCEEEECCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 99838998999975858661206440657203043444200264211367789743425666664512999999998299 Q ss_pred CCCHHHHHHCCCCCEEEC Q ss_conf 388489997899652622 Q gi|254780588|r 249 KIIATDLQDLSIIDGIIP 266 (317) Q Consensus 249 klTa~DL~~lGiID~II~ 266 (317) +++|+++++.|+||+|+| T Consensus 204 ~i~AeeA~~~GLVd~VVp 221 (556) T 2w3p_A 204 GVRGERAKAWRLVDEVVK 221 (556) T ss_dssp CEEHHHHHHTTSCSEEEC T ss_pred CCCHHHHHHCCCCCEECC T ss_conf 747999997697117728 No 89 >2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Probab=80.23 E-value=1.9 Score=22.72 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=38.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 97531455789999999999997422366677699999999999999999 Q gi|254780588|r 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSE 50 (317) Q Consensus 1 M~~yLdFEkpI~eLe~kI~eL~~~~~~~~~~~~~~ei~~Le~k~~~~~~~ 50 (317) |..||+.-+-+..-|.+|.+|-.++. +.++|+..+|++++.+..+ T Consensus 12 ~qEylevK~AL~aSEakIQqLmkvN~-----~ls~Elr~mQ~~~~~Lq~E 56 (63) T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNS-----SLSDELRKLQREIHKLQAE 56 (63) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH T ss_conf 99999999998743999999999978-----6769999999999999977 No 90 >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* Probab=74.71 E-value=3.2 Score=21.12 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=33.6 Q ss_pred EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE---E Q ss_conf 0672275334789729999887538008999845877502344202677683689999999999997199489999---5 Q gi|254780588|r 83 FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFI---D 159 (317) Q Consensus 83 f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lv---D 159 (317) |+-.-|...|.. -+..|. +.-+-.++||.-+.|.... ..+.+++|.++++|+|.+| | T Consensus 74 ~iDTPGH~~F~~--~~~rg~-~~~D~ailVV~A~~Gv~~Q-----------------T~e~i~~a~~~~vp~Iv~INKiD 133 (594) T 1g7s_A 74 FIDTPGHEAFTT--LRKRGG-ALADLAILIVDINEGFKPQ-----------------TQEALNILRMYRTPFVVAANKID 133 (594) T ss_dssp EECCCTTSCCTT--SBCSSS-BSCSEEEEEEETTTCCCHH-----------------HHHHHHHHHHTTCCEEEEEECGG T ss_pred EEECCCHHHHHH--HHHHHH-HHCCEEEEEEECCCCCCHH-----------------HHHHHHHHHHCCCCEEEEEECCC T ss_conf 998987699999--999999-7688999999888896389-----------------99999999984998799998965 Q ss_pred CCCCC Q ss_conf 35324 Q gi|254780588|r 160 TAGAY 164 (317) Q Consensus 160 tpGa~ 164 (317) -+++. T Consensus 134 ~~~~~ 138 (594) T 1g7s_A 134 RIHGW 138 (594) T ss_dssp GSTTC T ss_pred CCCCC T ss_conf 78842 No 91 >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Probab=71.76 E-value=2.8 Score=21.48 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=18.5 Q ss_pred HCCCCE-EEEEECCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 719948-9999535324677843002799999998 Q gi|254780588|r 149 RFKIPV-ISFIDTAGAYPGVDAEARGQGEAIARAT 182 (317) Q Consensus 149 ~f~lPi-v~lvDtpGa~~g~~aE~~G~~~aia~~l 182 (317) ..++++ +++|||||+......+. ....|+..+ T Consensus 83 ~~~~~~~l~iiDTPG~~d~~~~~~--~~~~i~~~i 115 (418) T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVDNSN--CWQPVIDYI 115 (418) T ss_dssp ----CEEEEEEECC-------------CHHHHHHH T ss_pred CCCCEEEEEEEECCCCCCCCCCHH--HHHHHHHHH T ss_conf 178231179998989765446366--799999999 No 92 >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Probab=69.75 E-value=6 Score=19.15 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=51.0 Q ss_pred HHHCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC Q ss_conf 42026776-83689999999999997199489999535324677843002799999998886237998899996167777 Q gi|254780588|r 125 IKHNFGSP-RPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSG 203 (317) Q Consensus 125 ~~~n~G~~-~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sG 203 (317) ++-++|+. -|.+|-+.+| ++|+++++++|.=-=..|+.- |...+. +... -+|-| +++|+|-+| T Consensus 208 i~g~~G~~~~~~~yl~~l~--~lc~k~gillI~DEV~tG~~~-------g~~~~~-----~~~g-v~PDi-v~~gK~l~g 271 (427) T 3fq8_A 208 IVGNSGFIVPDAGFLEGLR--EITLEHDALLVFDEVITGFRI-------AYGGVQ-----EKFG-VTPDL-TTLGKIIGG 271 (427) T ss_dssp SBCTTSCBCCCTTHHHHHH--HHHHHTTCEEEEECTTTBTTT-------BTTHHH-----HHTT-CCCSE-EEECGGGGT T ss_pred CCCCCCCEECCHHHHHHHH--HHHHHCEEEEEEECCCCCCCC-------CCCCHH-----HHHC-CCCCE-EEEHHHHCC T ss_conf 4788886409999999999--998747289997011105560-------333057-----8729-99677-533033109 Q ss_pred CCCCCCC---CCCEEE-E-CC------CCEEEECHHHHHHHHC Q ss_conf 5421133---200022-0-46------7401215544224421 Q gi|254780588|r 204 GAMGIAA---ANFVYM-L-EH------AIYSVISPEGAASILW 235 (317) Q Consensus 204 GA~a~~~---~d~v~m-~-~~------s~ysvisPEg~AsILw 235 (317) | +.++. .+.++- + ++ +.| --+|-+||+.+. T Consensus 272 G-~p~~av~~~~~i~~~~~~~~~~~~~~T~-~g~p~~~aaa~a 312 (427) T 3fq8_A 272 G-LPVGAYGGKREIMQLVAPAGPMYQAGTL-SGNPLAMTAGIK 312 (427) T ss_dssp T-SSCEEEEECHHHHTTBTTTSSBCCCCTT-TTCHHHHHHHHH T ss_pred C-CCCEEEEEHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHH T ss_conf 9-8825567739999974403776634467-887488888888 No 93 >3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens} Probab=63.71 E-value=4.1 Score=20.31 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=8.7 Q ss_pred HHHHHHHCCCCEEEEEECC Q ss_conf 9999997199489999535 Q gi|254780588|r 143 LMEMADRFKIPVISFIDTA 161 (317) Q Consensus 143 ~~~~A~~f~lPiv~lvDtp 161 (317) .++-|.+.++|+|.|+||- T Consensus 166 AI~EA~kl~IPvIgivDTn 184 (253) T 3bch_A 166 PLTEASYVNLPTIALCNTD 184 (253) T ss_dssp HHHHHHHTTCCEEEEECTT T ss_pred HHHHHHHCCCCEEEEECCC T ss_conf 7677876499779872489 No 94 >3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} Probab=62.13 E-value=8.3 Score=18.16 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=29.2 Q ss_pred CCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 3800899984587750234420267768368999999999999719948999953532467 Q gi|254780588|r 106 HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPG 166 (317) Q Consensus 106 ~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g 166 (317) .-+||+++|.. ....+. .-.+.++++++++|+++--...|.++. T Consensus 34 akrP~ii~G~g--------------~~~~~~---~~~l~~~~~~~~iPv~tt~~~kg~~~e 77 (170) T 3cf4_G 34 AKRPLLMVGTL--------------ALDPEL---LDRVVKISKAANIPIAATGSSLAVLAD 77 (170) T ss_dssp CSSEEEEECST--------------TCCHHH---HHHHHHHHHHHTCCEEECTTTHHHHTT T ss_pred CCCCEEEECCC--------------CCCHHH---HHHHHHHHHHHCCCEEECCCCCCCCCC T ss_conf 68989994665--------------250669---999999999859998987000576775 No 95 >3ofo_B 30S ribosomal protein S2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_B* 2wwl_B 3ofp_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B 1vs5_B 3i1o_B 3i1q_B 3i1s_B 3i1z_B 3i21_B 3kc4_B 3or9_B 3ora_B 2qal_B* 1p87_B 2aw7_B 2avy_B ... Probab=60.39 E-value=3.9 Score=20.44 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.3 Q ss_pred HHHHHHHHCCCCEEEEEECCC Q ss_conf 999999971994899995353 Q gi|254780588|r 142 RLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 142 r~~~~A~~f~lPiv~lvDtpG 162 (317) -+++-|.+.++|+|.++||-- T Consensus 163 ~ai~Ea~~l~IPvI~ivDTn~ 183 (218) T 3ofo_B 163 IAIKEANNLGIPVFAIVDTNS 183 (218) T ss_dssp HHHHHHHHTTCCEEEECCTTS T ss_pred HHHHHHHHCCCCEEEEEECCC T ss_conf 999999985997799850798 No 96 >1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A Probab=59.19 E-value=5.5 Score=19.40 Aligned_cols=16 Identities=6% Similarity=0.260 Sum_probs=9.1 Q ss_pred HHHHHCCCCCEEEEEE Q ss_conf 8886237998899996 Q gi|254780588|r 182 TEMCLKLQVPILSIII 197 (317) Q Consensus 182 l~~~~~~~vP~i~vv~ 197 (317) +.+.+.+.+|+|++|= T Consensus 131 i~Ea~~l~IP~I~ivD 146 (208) T 1vi6_A 131 VSEATAVGIPVVALCD 146 (208) T ss_dssp HHHHHHTTCCEEEEEC T ss_pred HHHHHHCCCCEEEEEC T ss_conf 9999980996588724 No 97 >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A* Probab=56.95 E-value=7.1 Score=18.61 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=14.5 Q ss_pred HHHHHHHHHCCCCEEEEE---ECCCCC Q ss_conf 999999997199489999---535324 Q gi|254780588|r 141 VRLMEMADRFKIPVISFI---DTAGAY 164 (317) Q Consensus 141 ~r~~~~A~~f~lPiv~lv---DtpGa~ 164 (317) .+...+|.+.++|+|.+| |-|+|. T Consensus 115 ~~~~~~a~~~~l~~i~viNKiD~~~a~ 141 (600) T 2ywe_A 115 VANFWKAVEQDLVIIPVINKIDLPSAD 141 (600) T ss_dssp HHHHHHHHHTTCEEEEEEECTTSTTCC T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCC T ss_conf 999999998799769999897588779 No 98 >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Probab=55.79 E-value=10 Score=17.56 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=5.9 Q ss_pred EEEEECCCCCCC Q ss_conf 999953532467 Q gi|254780588|r 155 ISFIDTAGAYPG 166 (317) Q Consensus 155 v~lvDtpGa~~g 166 (317) |+||||||..-+ T Consensus 89 i~vIDTPGl~d~ 100 (270) T 1h65_A 89 LNIIDTPGLIEG 100 (270) T ss_dssp EEEEECCCSEET T ss_pred EEEEECCCCCCC T ss_conf 999867775576 No 99 >3jyv_B 40S ribosomal protein S0(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_B Probab=55.27 E-value=7 Score=18.66 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.9 Q ss_pred HHHHHHHHCCCCEEEEEECCC Q ss_conf 999999971994899995353 Q gi|254780588|r 142 RLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 142 r~~~~A~~f~lPiv~lvDtpG 162 (317) .+++-|.+.++|+|.++||-- T Consensus 123 ~ai~EA~~l~IPvI~ivDTn~ 143 (193) T 3jyv_B 123 QAIKEASYVNIPVIALTDLDS 143 (193) T ss_dssp HHHHHHHHTTCCEEEEECTTC T ss_pred HHHHHHHHCCCCEEEEECCCC T ss_conf 666778756998787506899 No 100 >2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=54.84 E-value=6.7 Score=18.78 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.7 Q ss_pred HHHHHHHHHCCCCEEEEEECCC Q ss_conf 9999999971994899995353 Q gi|254780588|r 141 VRLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 141 ~r~~~~A~~f~lPiv~lvDtpG 162 (317) ...++-|.+.+||+|.|+||-. T Consensus 131 ~~av~Ea~~~~IPviai~DTn~ 152 (295) T 2zkq_b 131 HQPLTEASYVNLPTIALCNTDS 152 (295) T ss_dssp HHHHHHHHHHTCCEEEEECTTC T ss_pred HHHHHHHHHCCCCEEEEECCCC T ss_conf 4889999874999899815899 No 101 >1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Probab=54.24 E-value=10 Score=17.42 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=35.7 Q ss_pred CCCE-EEEEEECCCCCCHHH--------------HHHCCCCC--CH----HHHHHHHHHHHHHHHCCCCEEEEEEC Q ss_conf 3800-899984587750234--------------42026776--83----68999999999999719948999953 Q gi|254780588|r 106 HGQP-VAIIGQEKGSDTKSR--------------IKHNFGSP--RP----EGYRKAVRLMEMADRFKIPVISFIDT 160 (317) Q Consensus 106 ~g~~-v~vig~~kG~~~~~~--------------~~~n~G~~--~p----~g~rKa~r~~~~A~~f~lPiv~lvDt 160 (317) .+.| |+++.+.-|.++... ....+|++ .| |.|.-++...++|+++++||+.+.|+ T Consensus 112 ~~~p~v~~~v~r~gp~~g~~t~~~q~Dl~~~~~~~~gd~~~~vl~P~s~QEa~d~~~~Af~lAE~~~~PViv~~D~ 187 (395) T 1yd7_A 112 TETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTDA 187 (395) T ss_dssp CCCCEEEEEEC--------------------------CCCCEEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEECH T ss_pred CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 3787369984578676779886647789997655314678455679998999999999875368757870898402 No 102 >2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ... Probab=53.38 E-value=3.8 Score=20.51 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.4 Q ss_pred HHHHHHHHHCCCCEEEEEECCC Q ss_conf 9999999971994899995353 Q gi|254780588|r 141 VRLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 141 ~r~~~~A~~f~lPiv~lvDtpG 162 (317) .-+++-|.+.++|+|.++||-. T Consensus 171 ~~AI~EA~~l~IPvIaivDTn~ 192 (256) T 2vqe_B 171 AIAVREARKLFIPVIALADTDS 192 (256) T ss_dssp HHHHHHHHHTTCCCEECCCTTS T ss_pred HHHHHHHHHHCCCEEEEECCCC T ss_conf 8899999985895577613898 No 103 >3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=52.63 E-value=4.4 Score=20.07 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=60.5 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHCCHHHHH Q ss_conf 53145578999999999999742236667769---99999999999999997426-------999998887635002237 Q gi|254780588|r 3 HYLDFEEPISDLEAKIHELKKLSREDINEDFS---EEIRELEAMVCKTLSEIYSK-------LTPWQKTQVSRHPNRPHY 72 (317) Q Consensus 3 ~yLdFEkpI~eLe~kI~eL~~~~~~~~~~~~~---~ei~~Le~k~~~~~~~iy~~-------Lt~w~~v~~aRh~~Rp~~ 72 (317) |.+|.++-+.-|+.-..-+..+...+....+- .+...+-++..+....-|-+ ||-|..++-. -+. T Consensus 39 ~IIdl~~T~~~L~~A~~~l~~i~~~~~~iLfVgtk~~~~~~v~~~a~~~~~~yv~~rW~gG~LTN~~~i~~~-----i~~ 113 (231) T 3bbn_B 39 HIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR-----LHK 113 (231) T ss_dssp EEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCSSSCHHHHHHH-----HHH T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH-----HHH T ss_conf 488599999999999999999983798059996648799999999999699031672158865247888667-----765 Q ss_pred HHHHHHCCCC-EEE--------------ECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHH Q ss_conf 9998622545-067--------------2275334789729999887538008999845877502344202677683689 Q gi|254780588|r 73 IDYINSLFTH-FIS--------------LAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGY 137 (317) Q Consensus 73 ~dyi~~l~~d-f~e--------------l~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~ 137 (317) ...++...+. +.. .+-.+.+ .|+......|=+||-.+ |. T Consensus 114 ~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~-------~Gi~~m~~~Pd~viv~d-----------------~~-- 167 (231) T 3bbn_B 114 FRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYL-------GGIKYMTGLPDIVIIVD-----------------QQ-- 167 (231) T ss_dssp HHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTST-------TSTTSCCSCCSEEEESC-----------------TT-- T ss_pred HHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHC-------CCCCHHHCCCCEEEECC-----------------CC-- T ss_conf 89998886215231188889988768999998731-------46310312997798528-----------------63-- Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 9999999999971994899995353 Q gi|254780588|r 138 RKAVRLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 138 rKa~r~~~~A~~f~lPiv~lvDtpG 162 (317) +-.-+++-|.+.++|+|.++||-- T Consensus 168 -~~~~ai~Ea~~l~IPvI~ivDtn~ 191 (231) T 3bbn_B 168 -EEYTALRECITLGIPTICLIDTNC 191 (231) T ss_dssp -TTHHHHHHHHTTTCCEEECCCSSS T ss_pred -CCHHHHHHHHHCCCCEEEEECCCC T ss_conf -227999999973998788743898 No 104 >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C* Probab=52.38 E-value=9.1 Score=17.87 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=17.8 Q ss_pred HHHHHHHHHHCCCCEEEEE---ECCCCCC Q ss_conf 9999999997199489999---5353246 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFI---DTAGAYP 165 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lv---DtpGa~~ 165 (317) ....+.+|.+.++|+|-+| |-|+|.+ T Consensus 112 T~~~~~~A~~~~l~~I~vINKiD~~~A~~ 140 (599) T 3cb4_D 112 TLANCYTAMEMDLEVVPVLNKIDLPAADP 140 (599) T ss_dssp HHHHHHHHHHTTCEEEEEEECTTSTTCCH T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCH T ss_conf 39999999987997799998976887799 No 105 >1ytl_A Acetyl-COA decarbonylase/synthase complex epsilon subunit 2; structural genomics, protein structure initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6 Probab=49.08 E-value=13 Score=16.71 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=22.7 Q ss_pred CCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 380089998458775023442026776836899999999999971994899995 Q gi|254780588|r 106 HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFID 159 (317) Q Consensus 106 ~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvD 159 (317) .-+||+++|+ |.. +....+.++++++++||+|-.+ T Consensus 35 AkrPvii~G~--------------g~~-----~~~~e~~~~~~~~~iPv~tT~~ 69 (174) T 1ytl_A 35 AKRPLLIVGP--------------DMT-----DEMFERVKKFVEKDITVVATGS 69 (174) T ss_dssp CSSEEEEECS--------------CCC-----HHHHHHHHHHHTSSSEEEEETT T ss_pred CCCCEEEECC--------------CHH-----HHHHHHHHHHHHHCCCEEECCC T ss_conf 6892899674--------------540-----8999999999986969996266 No 106 >3dzv_A 4-methyl-5-(beta-hydroxyethyl)thiazole kinase; NP_816404.1, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.57A {Enterococcus faecalis} Probab=47.94 E-value=14 Score=16.59 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=37.8 Q ss_pred ECCCEEEEEEECCCCCCH---HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC Q ss_conf 538008999845877502---34420267768368999999999999719948999953532 Q gi|254780588|r 105 FHGQPVAIIGQEKGSDTK---SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGA 163 (317) Q Consensus 105 i~g~~v~vig~~kG~~~~---~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa 163 (317) +++.|+|.-.++-=.+.. .-..-|.||++++-........+.|.+.++||| +|-=|. T Consensus 39 ~GasP~M~~~~~E~~~~~~~a~al~IniG~l~~~~~~a~~~a~~~a~~~~~PvV--LDPV~v 98 (273) T 3dzv_A 39 IDAKPIMADDPREFPQMFQQTSALVLNLGHLSQEREQSLLAASDYARQVNKLTV--VDLVGY 98 (273) T ss_dssp TTCEEECCCCGGGHHHHHTTCSEEEEECCSCCHHHHHHHHHHHHHHHHTTCCEE--EECTTT T ss_pred CCCCHHHCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE--ECCCCC T ss_conf 089634049988999998566956997698997999999999999886299999--887356 No 107 >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX research center for structural genomics, NYSGXRC, structural genomics, PSI; 1.90A {Escherichia coli K12} SCOP: c.1.9.12 Probab=46.82 E-value=14 Score=16.47 Aligned_cols=133 Identities=15% Similarity=0.258 Sum_probs=75.9 Q ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEC Q ss_conf 99999999997199489999535324677843002799999998886237998899996167777542113320002204 Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLE 218 (317) Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~ 218 (317) .-.+.+++|.++++||+ +-+.+|. ..+...+.. ...|...+|+ -+.||+.--. .+. ++ T Consensus 112 ~f~~ql~lA~~~~~Pv~--iH~r~a~-----------~~~~~il~~---~~~~~~~~i~-H~fsG~~~~a---~~~--l~ 169 (265) T 1yix_A 112 SFIHHIQIGRELNKPVI--VHTRDAR-----------ADTLAILRE---EKVTDCGGVL-HCFTEDRETA---GKL--LD 169 (265) T ss_dssp HHHHHHHHHHHHTCCEE--EEEESCH-----------HHHHHHHHH---TTGGGTCEEE-TTCCSCHHHH---HHH--HT T ss_pred HHHHHHHHHHHCCCCCC--CCCCCHH-----------HHHHHHHHH---HCCCCCCEEE-EEECCCHHHH---HHH--HH T ss_conf 99999999987499841--1331158-----------999999998---3478865389-8406999999---999--98 Q ss_pred CCCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEE---------CCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 67401215544224421560122565542038848999789965262---------288984448989999999999999 Q gi|254780588|r 219 HAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGII---------PEPIGGAHRNPAQTISSVGEIISQ 289 (317) Q Consensus 219 ~s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II---------~EP~GGAHrd~~~~~~~lk~~i~~ 289 (317) .++|--+++ .+.++.+.+..+++..+.+ |.++ |.|..|....|.. +.. +.+ T Consensus 170 ~g~~isi~g----~~~~~~~~~~~~~v~~iPl-----------drlLlETD~P~~~p~~~rg~~n~P~~----l~~-v~~ 229 (265) T 1yix_A 170 LGFYISFSG----IVTFRNAEQLRDAARYVPL-----------DRLLVETDSPYLAPVPHRGKENQPAM----VRD-VAE 229 (265) T ss_dssp TTCEEEECG----GGGSTTCHHHHHHHHHSCG-----------GGEEECCCBTSCCCTTCTTSCCCGGG----HHH-HHH T ss_pred CCCEEECCC----CCCCHHHHHHHHHHHHCCH-----------HHEEEECCCCCCCCCCCCCCCCCHHH----HHH-HHH T ss_conf 698791255----4441347999999985043-----------44576137865676555898885699----999-999 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHH Q ss_conf 999985899899999999999972 Q gi|254780588|r 290 FLSETSTYSETEIREHRRQKYLNI 313 (317) Q Consensus 290 ~L~~L~~~~~~~Li~~R~~Kf~~i 313 (317) .+.++.+++.+++.++=++-++++ T Consensus 230 ~iA~l~~~~~eel~~~~~~N~~~l 253 (265) T 1yix_A 230 YMAVLKGVAVEELAQVTTDNFARL 253 (265) T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 999884989999999999999999 No 108 >2qn6_A Translation initiation factor 2 gamma subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus P2} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2aho_A 2qmu_A* 2plf_A* 3i1f_A* 3cw2_A 2pmd_A* Probab=45.45 E-value=14 Score=16.49 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=10.0 Q ss_pred EEEEEEEEECCCEEEEEEECCC Q ss_conf 2999988753800899984587 Q gi|254780588|r 97 AMQIGLARFHGQPVAIIGQEKG 118 (317) Q Consensus 97 aii~G~a~i~g~~v~vig~~kG 118 (317) .+++|.... +..++||.-.+| T Consensus 102 ~~i~g~~~a-D~ailvV~a~~G 122 (414) T 2qn6_A 102 TMLSGAALM-DGAILVVAANEP 122 (414) T ss_dssp HHHHTSSCC-SEEEEEEETTSC T ss_pred HHHHHCCCC-CCEEEEEECCCC T ss_conf 998320156-834999986678 No 109 >1eg7_A Formyltetrahydrofolate synthetase; folate binding, ATP binding, formate binding, monovalent cation binding, ligase; 2.50A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fpm_A 1fp7_A Probab=43.53 E-value=16 Score=16.13 Aligned_cols=100 Identities=23% Similarity=0.446 Sum_probs=51.3 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCC-------CHH----HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-CCCCHHHH Q ss_conf 0089998458775023442026776-------836----89999999999997199489999535324677-84300279 Q gi|254780588|r 108 QPVAIIGQEKGSDTKSRIKHNFGSP-------RPE----GYRKAVRLMEMADRFKIPVISFIDTAGAYPGV-DAEARGQG 175 (317) Q Consensus 108 ~~v~vig~~kG~~~~~~~~~n~G~~-------~p~----g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~-~aE~~G~~ 175 (317) --|+++++-+ -.+.++|.. +.+ |+.-..|-++...+|++|+|--|+- |+.- ++|.. T Consensus 326 ~~~VlVaTvR------ALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNl~~fGvpvVVAIN~---F~tDT~~Ei~--- 393 (557) T 1eg7_A 326 DATVIVATVR------ALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKFGVPAVVAINA---FPTDTEAELN--- 393 (557) T ss_dssp CEEEEEECHH------HHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEC---CTTCCHHHHH--- T ss_pred CEEEEEEECC------EEEECCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---CCCCCHHHHH--- T ss_conf 8668996411------064258988577464079999977766999997554328974898437---7767788999--- Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEE-EC--CCCEEEECH Q ss_conf 99999988862379988999961677775421133200022-04--674012155 Q gi|254780588|r 176 EAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM-LE--HAIYSVISP 227 (317) Q Consensus 176 ~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m-~~--~s~ysvisP 227 (317) .+. ..+....++ +++...+ |+-||..++ ..|+- ++ .+-|..+-| T Consensus 394 -~i~---~~~~~~Gv~-~a~~wa~-GG~Ga~dLA--~~Vv~~~~~~~~~f~~LY~ 440 (557) T 1eg7_A 394 -LLY---ELCAKAGAE-VALSWAK-GGEGGLELA--RKVLQTLESRPSNFHVLYN 440 (557) T ss_dssp -HHH---HHTTTSEEE-EECCTTT-GGGGGHHHH--HHHHHHHHHSCCCCCCSSC T ss_pred -HHH---HHHHHCCCE-EEEECCC-CCCCHHHHH--HHHHHHHHCCCCCCCCCCC T ss_conf -999---999865981-7641135-763579999--9999998515346654467 No 110 >3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Probab=41.88 E-value=10 Score=17.48 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=3.8 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780588|r 37 IRELEAMVCKT 47 (317) Q Consensus 37 i~~Le~k~~~~ 47 (317) +.+||..++.. T Consensus 147 ~~~le~~~~~~ 157 (562) T 3ghg_A 147 MKRLEVDIDIK 157 (562) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999999 No 111 >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A Probab=41.76 E-value=17 Score=15.95 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=7.1 Q ss_pred EEEEECCCCCCCC Q ss_conf 9999535324677 Q gi|254780588|r 155 ISFIDTAGAYPGV 167 (317) Q Consensus 155 v~lvDtpGa~~g~ 167 (317) |+++||||..-.. T Consensus 73 i~~iDTPGl~d~~ 85 (260) T 2xtp_A 73 IVIIDTPDMFSWK 85 (260) T ss_dssp EEEEECCGGGGSS T ss_pred EEEECCCCCCCCC T ss_conf 9993476504685 No 112 >3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} Probab=39.69 E-value=4 Score=20.38 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=37.6 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH------HHHCCCCCEEEEEECCCCCCCCCCCCCCCCE Q ss_conf 9999999971994899995353246778430027999999988------8623799889999616777754211332000 Q gi|254780588|r 141 VRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATE------MCLKLQVPILSIIIGEGGSGGAMGIAAANFV 214 (317) Q Consensus 141 ~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~------~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v 214 (317) .+..+.|++|+++.-.+++..| ++.++.+.+.+- .-....-|.|.|+.|.|-.|| =++++|-.+ T Consensus 86 ~~~e~~ae~~Gls~~~lmEnAG---------r~~a~~~~~~lgg~~Rl~~~n~~~~P~VlVlcG~GnNGg-DGla~AR~L 155 (306) T 3d3j_A 86 KKLLSVAEKHGLTLERRLEMTG---------VCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGA-QGISCGRHL 155 (306) T ss_dssp HHHHHHHHHTTCCHHHHHHHHH---------HHHHHHHHHHHC-----------CCCEEEEEECSSHHHH-HHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHH---------HHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCH-HHHHHHHHH T ss_conf 9999999984999899999999---------999999999837764456343588986999989999809-999999999 No 113 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A Probab=39.34 E-value=18 Score=15.71 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=54.6 Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEEC-CCEEEEEEECCCCCCHHHHHHCCCC Q ss_conf 269999988876350022379998622545067227533478972999988753-8008999845877502344202677 Q gi|254780588|r 53 SKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFH-GQPVAIIGQEKGSDTKSRIKHNFGS 131 (317) Q Consensus 53 ~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i~-g~~v~vig~~kG~~~~~~~~~n~G~ 131 (317) ++++|-+-.++++.-. +..+. +|.|+-.||..--.+- |-..-|..-+ .+||++.|-+ |..+. T Consensus 81 ~~m~p~~w~~la~~i~-----~~~~~-~dGvVVtHGTDTleeT-A~~L~~~l~~~~kPVVlTGAm----------rp~~~ 143 (358) T 2him_A 81 SDMTPEDWQHIAEDIK-----AHYDD-YDGFVILHGTDTMAYT-ASALSFMLENLGKPVIVTGSQ----------IPLAE 143 (358) T ss_dssp GGCCHHHHHHHHHHHH-----HHGGG-CSEEEEECCSTTHHHH-HHHHHHHEETCCSCEEEECCS----------SCTTS T ss_pred CCCCHHHHHHHHHHHH-----HHHCC-CCCEEEECCCCHHHHH-HHHHHHHHHCCCCCEEEECCC----------CCCCC T ss_conf 1089999999999999-----85236-9978997586369999-999999864789856996888----------88877 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 683689999999999997199489999 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFI 158 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lv 158 (317) +..+|.+-....+.+|.....+=|..+ T Consensus 144 ~~sDg~~NL~~Av~~A~~~~~~gV~v~ 170 (358) T 2him_A 144 LRSDGQINLLNALYVAANYPINEVTLF 170 (358) T ss_dssp TTCSHHHHHHHHHHHHHHSCCSSEEEE T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 676337789999999732577827997 No 114 >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Probab=39.23 E-value=8.6 Score=18.04 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=13.5 Q ss_pred CEEEEEECCCCCCCCCCC Q ss_conf 489999535324677843 Q gi|254780588|r 153 PVISFIDTAGAYPGVDAE 170 (317) Q Consensus 153 Piv~lvDtpGa~~g~~aE 170 (317) .-+++|||||+......+ T Consensus 95 ~~l~viDTPG~~D~~~~~ 112 (427) T 2qag_B 95 LKLTIVSTVGFGDQINKE 112 (427) T ss_dssp EEEEEEEEECCCC-CCHH T ss_pred EEEEEEECCCCCCCCCCH T ss_conf 769998488965543545 No 115 >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 Probab=39.09 E-value=19 Score=15.67 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=74.9 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEECC Q ss_conf 99999999971994899995353246778430027999999988862379988999961677775421133200022046 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEH 219 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a~~~~d~v~m~~~ 219 (317) -.+.+++|.++++||+-=. .+|. ..+.. .+.....|...+|+ -+.+|..--+ .++ ++. T Consensus 122 F~~ql~lA~~~~~Pv~iH~--r~a~-----------~~~~~---il~~~~~~~~~~i~-H~fsG~~e~~---~~~--l~~ 179 (268) T 1j6o_A 122 FVEQIELAGKLNLPLVVHI--RDAY-----------SEAYE---ILRTESLPEKRGVI-HAFSSDYEWA---KKF--IDL 179 (268) T ss_dssp HHHHHHHHHHHTCCEEEEE--ESCH-----------HHHHH---HHHHSCCCSSCEEE-TTCCSCHHHH---HHH--HHH T ss_pred HHHHHHHHHHCCCCEEEEE--CCHH-----------HHHHH---HHHHHCCCCCCEEE-EECCCCHHHH---HHH--HHC T ss_conf 9999999986199879971--0068-----------99999---99982587667589-8548989999---999--978 Q ss_pred CCEEEECHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEE---------CCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 7401215544224421560122565542038848999789965262---------2889844489899999999999999 Q gi|254780588|r 220 AIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGII---------PEPIGGAHRNPAQTISSVGEIISQF 290 (317) Q Consensus 220 s~ysvisPEg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II---------~EP~GGAHrd~~~~~~~lk~~i~~~ 290 (317) ++|--+++ .+.++.+.+..+++..+.+ |.++ |.|..|-...|..+ . .+.+. T Consensus 180 G~y~s~~g----~~~~~~~~~~~~~v~~iPl-----------drlLlETDaP~l~p~~~~g~~n~P~~l----~-~v~~~ 239 (268) T 1j6o_A 180 GFLLGIGG----PVTYPKNEALREVVKRVGL-----------EYIVLETDCPFLPPQPFRGKRNEPKYL----K-YVVET 239 (268) T ss_dssp TEEEEECG----GGGCTTCHHHHHHHHHHCG-----------GGEEECCCBTSCCCGGGTTSCCCGGGH----H-HHHHH T ss_pred CCEEEECC----CCCCCHHHHHHHHHHHCCC-----------CEEEEECCCCCCCCCCCCCCCCCHHHH----H-HHHHH T ss_conf 99598557----6440008999999984786-----------506874589877765557887975999----9-99999 Q ss_pred HHHHHCCCHHHHHHHHHHHHHH Q ss_conf 9998589989999999999997 Q gi|254780588|r 291 LSETSTYSETEIREHRRQKYLN 312 (317) Q Consensus 291 L~~L~~~~~~~Li~~R~~Kf~~ 312 (317) +.++.+++.+++.++=++-+++ T Consensus 240 iA~i~~~~~e~v~~~~~~N~~~ 261 (268) T 1j6o_A 240 ISQVLGVPEAKVDEATTENARR 261 (268) T ss_dssp HHHHHTSCHHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHHH T ss_conf 9988498999999999999999 No 116 >1ekq_A Hydroxyethylthiazole kinase; alpha-beta, transferase; 1.50A {Bacillus subtilis} SCOP: c.72.1.2 PDB: 1ekk_A 1c3q_A 1esj_A 1esq_A* Probab=39.06 E-value=19 Score=15.66 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=26.8 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 2026776836899999999999971994899995353 Q gi|254780588|r 126 KHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAG 162 (317) Q Consensus 126 ~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpG 162 (317) .-|.|.++++..+-.....+.|.+.+.|+|. |--| T Consensus 63 viN~Gtl~~~~~~~m~~a~~~A~~~~~PvVL--DpVg 97 (272) T 1ekq_A 63 VLNIGTLSKESVEAMIIAGKSANEHGVPVIL--DPVG 97 (272) T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHTTCCEEE--ECTT T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEE--CCCC T ss_conf 8507999989999999999999980998998--4735 No 117 >2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus} Probab=38.03 E-value=17 Score=15.95 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 699999999999999999 Q gi|254780588|r 33 FSEEIRELEAMVCKTLSE 50 (317) Q Consensus 33 ~~~ei~~Le~k~~~~~~~ 50 (317) +...|..||.|++.+... T Consensus 21 lEkri~~LEtkLd~l~~s 38 (43) T 2pnv_A 21 FEKRIVTLETKLETLIGS 38 (43) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999899999988 No 118 >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* Probab=37.11 E-value=20 Score=15.46 Aligned_cols=12 Identities=25% Similarity=0.260 Sum_probs=5.0 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999971994 Q gi|254780588|r 142 RLMEMADRFKIP 153 (317) Q Consensus 142 r~~~~A~~f~lP 153 (317) +-+.+|..+++| T Consensus 161 ehl~l~~~lgi~ 172 (483) T 3p26_A 161 EHMLLASSLGIH 172 (483) T ss_dssp HHHHHHHHTTCC T ss_pred HHHHHHHHCCCC T ss_conf 999999986998 No 119 >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Probab=36.89 E-value=20 Score=15.43 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=8.9 Q ss_pred EEEEEEEECCCEEEEEE Q ss_conf 99998875380089998 Q gi|254780588|r 98 MQIGLARFHGQPVAIIG 114 (317) Q Consensus 98 ii~G~a~i~g~~v~vig 114 (317) ...+...++|+.+.||= T Consensus 74 ~~~~~~~~~~~~i~liD 90 (262) T 3def_A 74 PVMVSRTMGGFTINIID 90 (262) T ss_dssp CEEEEEEETTEEEEEEE T ss_pred CEEEEEEECCEEEEEEE T ss_conf 22789998884899983 No 120 >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Probab=36.31 E-value=20 Score=15.37 Aligned_cols=56 Identities=14% Similarity=0.255 Sum_probs=28.3 Q ss_pred EEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEE Q ss_conf 06722753347897299998875380089998458775023442026776836899999999999971994-89999 Q gi|254780588|r 83 FISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP-VISFI 158 (317) Q Consensus 83 f~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lP-iv~lv 158 (317) |+.+-|-..|- +.+++|.... +.-+.||+-++|.. |. ...-+.+|.-+++| +|..+ T Consensus 108 ~iD~PGH~~fi--~nmi~g~~~~-D~alLVV~A~~G~~-------------~Q----T~EHl~i~~~lgi~~iIV~i 164 (434) T 1zun_B 108 IADTPGHEQYT--RNMATGASTC-DLAIILVDARYGVQ-------------TQ----TRRHSYIASLLGIKHIVVAI 164 (434) T ss_dssp EEECCCSGGGH--HHHHHHHTTC-SEEEEEEETTTCSC-------------HH----HHHHHHHHHHTTCCEEEEEE T ss_pred EEECCCCHHHH--HHHHHHCCCC-CEEEEEEECCCCCC-------------CC----HHHHHHHHHHCCCCEEEEEE T ss_conf 99799837889--9998534367-55999860567777-------------44----37999999981998699999 No 121 >2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type III, transferase; 1.90A {Marchantia polymorpha} Probab=35.44 E-value=16 Score=16.03 Aligned_cols=40 Identities=20% Similarity=0.071 Sum_probs=16.6 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEE-CCCCEEEECHHHHH Q ss_conf 89999616777754211332000220-46740121554422 Q gi|254780588|r 192 ILSIIIGEGGSGGAMGIAAANFVYML-EHAIYSVISPEGAA 231 (317) Q Consensus 192 ~i~vv~geg~sGGA~a~~~~d~v~m~-~~s~ysvisPEg~A 231 (317) ....+++-||+|+..++.+|...+.. +...--|++.|-|+ T Consensus 173 ~~~~~~~~gC~g~~~aL~~A~~~i~~g~~~~vLvV~~E~~S 213 (413) T 2p0u_A 173 RRVMMYQQGAFAGATVLRVAKDLAENNAGARVLAICSEVTA 213 (413) T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHHSTTCEEEEEEEECST T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf 02302368288999999999999981999749999500135 No 122 >3llc_A Putative hydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Probab=35.26 E-value=21 Score=15.26 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=29.0 Q ss_pred CCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 38008999845877502344202677683689999999999997199489999535324677 Q gi|254780588|r 106 HGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGV 167 (317) Q Consensus 106 ~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~ 167 (317) +.+|++|+-| | |+ -+.++ .++..+.+.+.+.+.-|+.| |-+|.--.. T Consensus 35 ~~~P~vv~~H--G----------~~-~~~~~-~~~~~l~~~l~~~G~~v~~~-D~rG~G~s~ 81 (270) T 3llc_A 35 DERPTCIWLG--G----------YR-SDMTG-TKALEMDDLAASLGVGAIRF-DYSGHGASG 81 (270) T ss_dssp TTSCEEEEEC--C----------TT-CCTTS-HHHHHHHHHHHHHTCEEEEE-CCTTSTTCC T ss_pred CCCCEEEEEC--C----------CC-CCCCC-CHHHHHHHHHHHCCCEEEEE-ECCCCCCCC T ss_conf 9883899938--9----------66-68776-78999999999789989998-379998888 No 123 >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A Probab=34.95 E-value=21 Score=15.23 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=16.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEECC Q ss_conf 6778430027999999988862379-9889999616 Q gi|254780588|r 165 PGVDAEARGQGEAIARATEMCLKLQ-VPILSIIIGE 199 (317) Q Consensus 165 ~g~~aE~~G~~~aia~~l~~~~~~~-vP~i~vv~ge 199 (317) +|--.+.+|..++ +--|..|+.+. +-+||-++.+ T Consensus 144 ~gGvl~R~GHTEa-avdL~~lAGl~P~avi~Eil~~ 178 (217) T 1g57_A 144 AGGVLTRGGHTEA-TIDLMTLAGFKPAGVLCELTND 178 (217) T ss_dssp TTGGGTCCSHHHH-HHHHHHHTTSCSCEEEEEBBCT T ss_pred CCCCCCCCCHHHH-HHHHHHHCCCCCCEEEEEEECC T ss_conf 7980678968989-9999998199983899998559 No 124 >2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Probab=34.92 E-value=15 Score=16.25 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=26.0 Q ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 1994899995353246778430027999999988862379988999961677 Q gi|254780588|r 150 FKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 150 f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) -+.|||.++.-.||+-+.. .|......+.|++.||+--|+ T Consensus 442 p~r~vv~i~GDgsf~~~~~------------eL~t~~~~~lpi~iiV~NN~g 481 (568) T 2c31_A 442 TGKPVIAVEGDSAFGFSGM------------ELETICRYNLPVTVIIMNNGG 481 (568) T ss_dssp HCSCEEEEEEHHHHHTTGG------------GHHHHHHTTCCEEEEEEESSB T ss_pred CCCCEEEECCCCHHCCCHH------------HHHHHHHHCCCEEEEEEECCH T ss_conf 5982798607701016799------------999999969692999992866 No 125 >2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Probab=34.87 E-value=21 Score=15.22 Aligned_cols=14 Identities=14% Similarity=0.686 Sum_probs=6.0 Q ss_pred HCCCCCEEEEEECC Q ss_conf 23799889999616 Q gi|254780588|r 186 LKLQVPILSIIIGE 199 (317) Q Consensus 186 ~~~~vP~i~vv~ge 199 (317) +..+.|++.||+.. T Consensus 450 ~~~~lpi~ivV~NN 463 (566) T 2vbi_A 450 VRYELPVIIFLINN 463 (566) T ss_dssp HHTTCCCEEEEEEC T ss_pred HHHCCCEEEEEEEC T ss_conf 99497929999979 No 126 >1v8a_A Hydroxyethylthiazole kinase; alpha-beta, ATP binding, transferase, structural genomics, riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii} SCOP: c.72.1.2 PDB: 3hpd_A Probab=34.70 E-value=22 Score=15.20 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=28.6 Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 202677683689999999999997199489999535324 Q gi|254780588|r 126 KHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY 164 (317) Q Consensus 126 ~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~ 164 (317) .-|.|+++++..+-.....+.|.+.+.|+| +|-.|.. T Consensus 61 ~in~Gtl~~~~~~~~~~a~~~A~~~~~PvV--LDpvgv~ 97 (265) T 1v8a_A 61 VINIGTLDSGWRRSMVKATEIANELGKPIV--LDPVGAG 97 (265) T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTCCEE--EECTTBT T ss_pred EEECCCCCHHHHHHHHHHHHHHHHCCCCEE--ECCCCCC T ss_conf 886787998999999999999997199999--8087668 No 127 >1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1 Probab=34.66 E-value=22 Score=15.19 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 4557899999999999974223666776999999999999999 Q gi|254780588|r 6 DFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTL 48 (317) Q Consensus 6 dFEkpI~eLe~kI~eL~~~~~~~~~~~~~~ei~~Le~k~~~~~ 48 (317) +.|++|++|+.+|+.|..+. ...+.|+.|...+- T Consensus 51 eLeeEI~~L~~eI~~LE~iq---------s~aK~LRNKA~~Le 84 (96) T 1t3j_A 51 HLEEEIARLSKEIDQLEKMQ---------NNSKLLRNKAVQLE 84 (96) T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH T ss_conf 99999999999999999999---------99999987898899 No 128 >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} Probab=34.65 E-value=22 Score=15.19 Aligned_cols=15 Identities=7% Similarity=0.348 Sum_probs=7.4 Q ss_pred CCHHHHHHHHHHHHH Q ss_conf 314557899999999 Q gi|254780588|r 4 YLDFEEPISDLEAKI 18 (317) Q Consensus 4 yLdFEkpI~eLe~kI 18 (317) +.||.+.+.++..++ T Consensus 148 ~~~~~~~~~~i~~~l 162 (704) T 2rdo_7 148 GANFLKVVNQIKTRL 162 (704) T ss_pred CCCHHHHHHHHHHHH T ss_conf 789999999999987 No 129 >3mmp_A Elongation factor TU 2, elongation factor TS; RDRP,HOST-factor complex, translation, transferase; HET: PXN; 2.50A {Escherichia coli} Probab=34.36 E-value=15 Score=16.25 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=22.4 Q ss_pred EEEEEECCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 8999953532-----------------467784300279999999888623799889999616 Q gi|254780588|r 154 VISFIDTAGA-----------------YPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 154 iv~lvDtpGa-----------------~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) .++|+||||- ..=++|.++-+.+. -+.+..+..+.+|.+-|++-. T Consensus 360 ~i~iID~PGH~df~~nmi~G~s~aD~AiLVVdA~~Gv~~QT-rEHl~la~~lGi~~iIV~INK 421 (678) T 3mmp_A 360 HYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQVGVPYIIVFLNK 421 (678) T ss_dssp EEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCCCTTH-HHHHHHHHHTTCSCEEEEEEC T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHH-HHHHHHHHHCCCCEEEEEEEC T ss_conf 99999899628779999999976989999998999964889-999999998399807999865 No 130 >1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A Probab=34.28 E-value=22 Score=15.15 Aligned_cols=88 Identities=9% Similarity=0.117 Sum_probs=52.3 Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEE-CCCEEEEEEECCCCCCHHHHHHCCCC Q ss_conf 26999998887635002237999862254506722753347897299998875-38008999845877502344202677 Q gi|254780588|r 53 SKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARF-HGQPVAIIGQEKGSDTKSRIKHNFGS 131 (317) Q Consensus 53 ~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i-~g~~v~vig~~kG~~~~~~~~~n~G~ 131 (317) +++||.+-.+++++-.+- .+. +|.|+-+||..--.+- |-...+..- -++||++.|-| |..+. T Consensus 53 ~~~~~~~w~~la~~i~~~-----~~~-~dGvVVtHGTDTl~~T-A~~Ls~~~~~~~kPVVlTGa~----------rp~~~ 115 (328) T 1wls_A 53 TLIQPSDWERLAKEIEKE-----VWE-YDGIVITHGTDTMAYS-ASMLSFMLRNPPIPIVLTGSM----------LPITE 115 (328) T ss_dssp GGCCHHHHHHHHHHHHHH-----TTT-CSEEEEECCGGGHHHH-HHHHHHHEESCSSEEEEECCS----------SCTTS T ss_pred HHCCHHHHHHHHHHHHHH-----HHC-CCCEEEECCCCHHHHH-HHHHHHHHHCCCCCEEEECCC----------CCCCC T ss_conf 238999999999999987-----615-8988996686329999-999999974799988997978----------88877 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 683689999999999997199489999 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFI 158 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lv 158 (317) +..+|-+-....+.+|.. ..|=|..+ T Consensus 116 ~~sDg~~NL~~Av~~A~~-~~~gV~v~ 141 (328) T 1wls_A 116 KNSDAPFNLRTALEFVKL-GIRGIYIA 141 (328) T ss_dssp SSCSHHHHHHHHHHHHTT-TCCEEEEE T ss_pred CCCHHHHHHHHHHHHHHH-CCCCEEEE T ss_conf 786179999999999875-48866996 No 131 >1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Probab=33.13 E-value=23 Score=15.03 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=13.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEECC Q ss_conf 6778430027999999988862379-9889999616 Q gi|254780588|r 165 PGVDAEARGQGEAIARATEMCLKLQ-VPILSIIIGE 199 (317) Q Consensus 165 ~g~~aE~~G~~~aia~~l~~~~~~~-vP~i~vv~ge 199 (317) +|--.+.+|..++-- -|..|+.+. +-+||-++++ T Consensus 155 ~gGvl~R~GHTEaaV-dL~~lAGl~P~avi~Eil~~ 189 (227) T 1snn_A 155 EGLVKNRQGHTEMTV-ALAELANLVPITTICEMMGD 189 (227) T ss_dssp TTGGGTCCSHHHHHH-HHHHHTTSCSEEEEEEEBCT T ss_pred CCCCCCCCCHHHHHH-HHHHHCCCCCEEEEEEEECC T ss_conf 688744787799999-99998299864999998569 No 132 >1ueh_A Undecaprenyl pyrophosphate synthase; parallel alpha-beta, rossmann-like fold, transferase; HET: OXN; 1.73A {Escherichia coli} SCOP: c.101.1.1 PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1x09_A* 1x08_A* Probab=32.47 E-value=23 Score=14.95 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 836899999999999971994899995 Q gi|254780588|r 133 RPEGYRKAVRLMEMADRFKIPVISFID 159 (317) Q Consensus 133 ~p~g~rKa~r~~~~A~~f~lPiv~lvD 159 (317) |-.|+.|..++++.|.+++++.||+=- T Consensus 43 h~~G~~~l~eiv~wc~~lGIk~lTvYa 69 (253) T 1ueh_A 43 HKAGAKSVRRAVSFAANNGIEALTLYA 69 (253) T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEE T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 999999999999999976998899986 No 133 >3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides fragilis, structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343} Probab=32.31 E-value=23 Score=14.94 Aligned_cols=74 Identities=9% Similarity=0.212 Sum_probs=53.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHCCCCHH----HHHHHHHCCHHHHHH Q ss_conf 97531455789999999999997422366677---69999999999999999974269999----988876350022379 Q gi|254780588|r 1 MRHYLDFEEPISDLEAKIHELKKLSREDINED---FSEEIRELEAMVCKTLSEIYSKLTPW----QKTQVSRHPNRPHYI 73 (317) Q Consensus 1 M~~yLdFEkpI~eLe~kI~eL~~~~~~~~~~~---~~~ei~~Le~k~~~~~~~iy~~Lt~w----~~v~~aRh~~Rp~~~ 73 (317) |++|-++.+.+..+...+......-+...-.+ +-++-.+|..+..+....||.-|||. |.+.++-||-+-+.+ T Consensus 94 ~q~y~~lf~s~~~fyanf~~y~sylk~~~~~~~~kL~~~~~~ls~~~~e~kq~ifdiLsP~a~qAE~~lL~d~PLKeqIi 173 (270) T 3iee_A 94 KQNYTGLFQARTEFYANFDTYLSYLKKKDVTNAKKLLDVNYQLSTQMSEYKQNIFDILSPFTEQAELVLLVDNPLKAQIM 173 (270) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHH T ss_conf 99999999999999998999999988760643999999899999999999988999813888878999972796389999 Q ss_pred H Q ss_conf 9 Q gi|254780588|r 74 D 74 (317) Q Consensus 74 d 74 (317) . T Consensus 174 a 174 (270) T 3iee_A 174 S 174 (270) T ss_dssp H T ss_pred H T ss_conf 9 No 134 >2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A Probab=32.00 E-value=24 Score=14.90 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=23.1 Q ss_pred HHCCCCCCH----HHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 202677683----689999999999997199489999 Q gi|254780588|r 126 KHNFGSPRP----EGYRKAVRLMEMADRFKIPVISFI 158 (317) Q Consensus 126 ~~n~G~~~p----~g~rKa~r~~~~A~~f~lPiv~lv 158 (317) ++.-|++.. .|+.|..++++.|.++++|.||+= T Consensus 30 Ak~~g~~~~~Gh~~G~~~l~~i~~~c~~~gI~~lTvY 66 (245) T 2d2r_A 30 AKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLY 66 (245) T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEE T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 9887997789999999999999999997799889977 No 135 >2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI, protein structure initiative, PNP, UDP, ontario/toronto SGC; 1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A* 3enz_A* Probab=31.41 E-value=24 Score=14.84 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=50.4 Q ss_pred HHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHH Q ss_conf 88763500223799986225450672275334789729999887538008999845877502344202677683689999 Q gi|254780588|r 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKA 140 (317) Q Consensus 61 v~~aRh~~Rp~~~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa 140 (317) |-+.=.|.| -++|..+||+..++.--|. ..+--|.++|++|.|+.+ ||-.|...--. T Consensus 42 vi~~GDP~R---~~~ia~~ld~~~~~~~~R~------~~~~tG~y~G~~V~v~s~--------------GiG~psa~i~~ 98 (267) T 2b94_A 42 VLVVGDPGR---VDKVKMLCDSYVDLAYNRE------YKSVECTYKGQKFLCVSH--------------GVGSAGCAICF 98 (267) T ss_dssp EEECSSHHH---HHHHHHTSSEEEECC---C------EEEEEEEETTEEEEEEEE--------------CTTCSCSHHHH T ss_pred EEECCCHHH---HHHHHHHCCCCEEEECCCC------EEEEEEEECCEEEEEEEC--------------CCCHHHHHHHH T ss_conf 996899799---9999997088545521288------799999996899999955--------------76688899999 Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 9999999971994899995353246 Q gi|254780588|r 141 VRLMEMADRFKIPVISFIDTAGAYP 165 (317) Q Consensus 141 ~r~~~~A~~f~lPiv~lvDtpGa~~ 165 (317) . .|. +++...|-.+-|.|+.. T Consensus 99 ~---eL~-~~g~~~iIriGt~Ggl~ 119 (267) T 2b94_A 99 E---ELM-NNGAKVIIRAGSCGSLQ 119 (267) T ss_dssp H---HHH-HTTCCEEEEEEEEEESC T ss_pred H---HHH-HCCCCEEEEECCCCCCC T ss_conf 9---999-70996799963122666 No 136 >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Probab=31.12 E-value=24 Score=14.80 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=14.2 Q ss_pred EEEEECCCCC-CCCCCCCHHH Q ss_conf 9999535324-6778430027 Q gi|254780588|r 155 ISFIDTAGAY-PGVDAEARGQ 174 (317) Q Consensus 155 v~lvDtpGa~-~g~~aE~~G~ 174 (317) ++|+||||-. |....++.+. T Consensus 167 i~l~DTPGi~~p~~~~~~~~~ 187 (282) T 1puj_A 167 LELLDTPGILWPKFEDELVGL 187 (282) T ss_dssp EEEEECCCCCCSCCCCHHHHH T ss_pred CEEECCCCCCCCCCCCHHHHH T ss_conf 078557752478876688898 No 137 >1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Probab=30.95 E-value=25 Score=14.78 Aligned_cols=14 Identities=14% Similarity=0.449 Sum_probs=6.1 Q ss_pred HCCCCCEEEEEECC Q ss_conf 23799889999616 Q gi|254780588|r 186 LKLQVPILSIIIGE 199 (317) Q Consensus 186 ~~~~vP~i~vv~ge 199 (317) ...++|++.||+-. T Consensus 554 ~r~~lpi~ivV~NN 567 (677) T 1t9b_A 554 VQAGTPVKILILNN 567 (677) T ss_dssp HHHTCCCEEEEEEC T ss_pred HHHCCCEEEEEEEC T ss_conf 99786929999969 No 138 >3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.20A {Homo sapiens} Probab=30.28 E-value=7.2 Score=18.59 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=10.5 Q ss_pred HHHHHCCCCCEEEEEECCCC Q ss_conf 88862379988999961677 Q gi|254780588|r 182 TEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 182 l~~~~~~~vP~i~vv~geg~ 201 (317) +..+...+.|++||=+=.|. T Consensus 180 i~~~N~~~a~VlSiDiPSG~ 199 (259) T 3d3k_A 180 VAWANQNRAPVLSIDPPVHE 199 (259) T ss_dssp HHHHHHHCSCEEEESCCCC- T ss_pred HHHHHHCCCCEEEEECCCCC T ss_conf 99998579978999789998 No 139 >3gaa_A Uncharacterized protein TA1441; the protein with unknown function from thermoplasma acidophilum, structural genomics,PSI, MCSG; 2.70A {Thermoplasma acidophilum} Probab=30.18 E-value=25 Score=14.70 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=20.7 Q ss_pred CCCHHH-HHHHHHHHHHHHHCCCCEEEEEE Q ss_conf 768368-99999999999971994899995 Q gi|254780588|r 131 SPRPEG-YRKAVRLMEMADRFKIPVISFID 159 (317) Q Consensus 131 ~~~p~g-~rKa~r~~~~A~~f~lPiv~lvD 159 (317) .+.|++ ++-+..++++|.+++.--|..+. T Consensus 97 p~~~~~~~~~~~~i~~~~~~~gv~~ii~l~ 126 (252) T 3gaa_A 97 PISSAHIYEISNTLMNWIDQVGASEIVIME 126 (252) T ss_dssp CCCGGGHHHHHHHHHHHHHHHTCSEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 898137999999999999982993899972 No 140 >2zkr_6 60S ribosomal protein L30E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_C Probab=29.80 E-value=26 Score=14.65 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=25.2 Q ss_pred CEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 008999845877502344202677683689999999999997199489999535 Q gi|254780588|r 108 QPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTA 161 (317) Q Consensus 108 ~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtp 161 (317) ..++|++.+-..++. .++..+|+..++|++.|..|. T Consensus 43 aklVilA~D~~~~~~------------------~~i~~~c~~~~Ip~~~~~~s~ 78 (115) T 2zkr_6 43 AKLVILANNCPALRK------------------SEIEYYAMLAKTGVHHYSGNN 78 (115) T ss_dssp EEEEEEETTCCSSTT------------------THHHHHHHHHTCEEEEEESCH T ss_pred CCEEEEECCCCHHHH------------------HHHHHHHHHCCCCEEEECCCH T ss_conf 719999688998999------------------999999986699979978999 No 141 >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* Probab=29.80 E-value=26 Score=14.65 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=8.7 Q ss_pred EEEEEE---EEEC-CCEEEEEEE Q ss_conf 299998---8753-800899984 Q gi|254780588|r 97 AMQIGL---ARFH-GQPVAIIGQ 115 (317) Q Consensus 97 aii~G~---a~i~-g~~v~vig~ 115 (317) .+++|. |.+. |..|.+++. T Consensus 219 ~vv~G~v~~G~l~~gd~v~i~p~ 241 (397) T 1d2e_A 219 TVVTGTLERGILKKGDECEFLGH 241 (397) T ss_dssp EEEEEECCBSEEETTCEEEEEET T ss_pred EEEEEEEECCEEECCCEEEEECC T ss_conf 99999995454825998999359 No 142 >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R* Probab=29.46 E-value=23 Score=15.00 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=18.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 677683689999999999997199489999535 Q gi|254780588|r 129 FGSPRPEGYRKAVRLMEMADRFKIPVISFIDTA 161 (317) Q Consensus 129 ~G~~~p~g~rKa~r~~~~A~~f~lPiv~lvDtp 161 (317) +-...|+.|-+++ .+++.+.+--+|.|-.|+ T Consensus 66 ~~~~~~e~~a~al--~~~~~~~~p~~VL~~~T~ 96 (315) T 1efv_A 66 YKGLLPEELTPLI--LATQKQFNYTHICAGASA 96 (315) T ss_dssp GTTCCHHHHHHHH--HHHHHHHCCSEEEEESSH T ss_pred CCCCCCHHHHHHH--HHHHHHCCCCEEEECCCH T ss_conf 2035603457899--888751485489963774 No 143 >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Probab=29.31 E-value=14 Score=16.45 Aligned_cols=17 Identities=6% Similarity=0.511 Sum_probs=8.7 Q ss_pred HHHCCCCCEEEEEECCC Q ss_conf 86237998899996167 Q gi|254780588|r 184 MCLKLQVPILSIIIGEG 200 (317) Q Consensus 184 ~~~~~~vP~i~vv~geg 200 (317) ++...++|++.||+--+ T Consensus 481 t~~~~~lpi~ivV~NN~ 497 (616) T 2pan_A 481 VGAQFNIPYIHVLVNNA 497 (616) T ss_dssp HHHHTTCCCEEEEEECS T ss_pred HHHHHCCCEEEEEEECC T ss_conf 99995989189999589 No 144 >1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Probab=28.85 E-value=10 Score=17.49 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=12.4 Q ss_pred HHHHHCC-CCEEEEEECCCC Q ss_conf 9999719-948999953532 Q gi|254780588|r 145 EMADRFK-IPVISFIDTAGA 163 (317) Q Consensus 145 ~~A~~f~-lPiv~lvDtpGa 163 (317) ..++.|. -+.|.|+||-|. T Consensus 275 ~w~~~y~~~l~i~L~DT~g~ 294 (449) T 1ybe_A 275 DWNRLYGGNLLIVLPDAFGT 294 (449) T ss_dssp HHHHHCCGGGCEECCCTTCH T ss_pred HHHHHCCCCCEEEEECCCCH T ss_conf 99986699635753064458 No 145 >2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A* Probab=28.47 E-value=27 Score=14.50 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.1 Q ss_pred CCCCCCCCCCCCCCC Q ss_conf 167777542113320 Q gi|254780588|r 198 GEGGSGGAMGIAAAN 212 (317) Q Consensus 198 geg~sGGA~a~~~~d 212 (317) +-||+|+..++.+|+ T Consensus 174 ~~gC~g~~~aL~~A~ 188 (406) T 2d3m_A 174 MQGAYAGGTVMRYAK 188 (406) T ss_dssp SCGGGHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHH T ss_conf 784779999999999 No 146 >1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* 2ffd_B* 1rf1_B* ... Probab=28.27 E-value=27 Score=14.47 Aligned_cols=46 Identities=17% Similarity=0.331 Sum_probs=25.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 4557899999999999974223666776999999999999999997 Q gi|254780588|r 6 DFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEI 51 (317) Q Consensus 6 dFEkpI~eLe~kI~eL~~~~~~~~~~~~~~ei~~Le~k~~~~~~~i 51 (317) |.|+-|.++..+|++.+..-.+..+..+..++..++.+++....+| T Consensus 1 ~~e~~i~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i 46 (328) T 1fzc_B 1 DNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKI 46 (328) T ss_dssp -----------------CTTTTTTTTHHHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9678999999999999999999975058889999999999999999 No 147 >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Probab=28.16 E-value=14 Score=16.59 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=5.9 Q ss_pred EEEEEECCCCCCCC Q ss_conf 89999535324677 Q gi|254780588|r 154 VISFIDTAGAYPGV 167 (317) Q Consensus 154 iv~lvDtpGa~~g~ 167 (317) +..+++.|-...+. T Consensus 318 ~~~~~~~~~~~~~~ 331 (566) T 3fim_B 318 AAFFVNSNQTFDNI 331 (566) T ss_dssp CEEEESCSCSSGGG T ss_pred EEEECCCCCCCCHH T ss_conf 57761688674300 No 148 >3ddo_A Urdpase, upase, uridine phosphorylase; transferase, cytoplasm, glycosyltransferase; 1.50A {Salmonella typhimurium} PDB: 1ryz_A 1sj9_A* 1y1q_A* 1y1s_A 1y1r_A 1zl2_A* 2hn9_A 1y1t_A* 2hsw_A 2hwu_A* 2pga_A* 2hrd_A 3dps_A 3fwp_A* 3c74_A* 2qdk_A 2iq5_A 2oec_A* 2i8a_A 2rj3_A ... Probab=28.13 E-value=27 Score=14.46 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=50.5 Q ss_pred HHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHH Q ss_conf 87635002237999862254506722753347897299998875380089998458775023442026776836899999 Q gi|254780588|r 62 QVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAV 141 (317) Q Consensus 62 ~~aRh~~Rp~~~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~ 141 (317) -+.=.|+|-. .|-.+|++..++.-.|. ..+--|+++|++|.|+.+ ||-.|.. . T Consensus 23 i~~Gdp~Ra~---~ia~~l~~~~~~~~~r~------~~~ytG~~~G~~V~v~~~--------------GiG~~~a----a 75 (253) T 3ddo_A 23 IVPGDPERVE---KIAALMDKPVKLASHRE------FTSWRAELDGKAVIVCST--------------GIGGPST----S 75 (253) T ss_dssp EEESCGGGHH---HHHTTSEEEEEEEEETT------EEEEEEEETTEEEEEECC--------------CSSHHHH----H T ss_pred EECCCHHHHH---HHHHHHCCCEEECCCCC------EEEEEEEECCEEEEEEEC--------------CCCHHHH----H T ss_conf 9689989999---99997078736502388------489999999999999967--------------8675489----9 Q ss_pred HHHHHHHHCCCCEEEEEECCCCC Q ss_conf 99999997199489999535324 Q gi|254780588|r 142 RLMEMADRFKIPVISFIDTAGAY 164 (317) Q Consensus 142 r~~~~A~~f~lPiv~lvDtpGa~ 164 (317) -.+.....++.-.+-.+-|.|+. T Consensus 76 i~~~el~~~g~~~iIr~Gt~G~l 98 (253) T 3ddo_A 76 IAVEELAQLGIRTFLRIGTTGAI 98 (253) T ss_dssp HHHHHHHHTTCCEEEEEEEECCC T ss_pred HHHHHHHHCCCCEEEEECCCCCC T ss_conf 99999876299889996565676 No 149 >1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Probab=27.97 E-value=18 Score=15.80 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=23.5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCC Q ss_conf 4677843002799999998886237-99889999616777 Q gi|254780588|r 164 YPGVDAEARGQGEAIARATEMCLKL-QVPILSIIIGEGGS 202 (317) Q Consensus 164 ~~g~~aE~~G~~~aia~~l~~~~~~-~vP~i~vv~geg~s 202 (317) .+|--.+.+|..++ +--|..++.+ .+=+||-++.+++. T Consensus 143 ~~gGvl~R~GHTEa-avdL~~lAGl~P~avicEil~d~g~ 181 (233) T 1k4i_A 143 VAGGVRARRGHTEA-GVELCRLAGKRPVAVISEIVDDGQE 181 (233) T ss_dssp CTTHHHHCCSHHHH-HHHHHHHTTCCSBEEEEEBEECCEE T ss_pred CCCCCCCCCCHHHH-HHHHHHHCCCCCCEEEEEEEECCCC T ss_conf 26982688978899-9999998099972899999408986 No 150 >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Probab=26.71 E-value=29 Score=14.29 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 999999999999719948999953532467 Q gi|254780588|r 137 YRKAVRLMEMADRFKIPVISFIDTAGAYPG 166 (317) Q Consensus 137 ~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g 166 (317) .....++++.+...+...|+|.||-|.+.. T Consensus 168 ~~~~~~~~~~~~~~Gad~I~l~DT~G~~~P 197 (337) T 3ble_A 168 PDYVKSLVEHLSKEHIERIFLPDTLGVLSP 197 (337) T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTCCCCH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 899988999998751135203651134786 No 151 >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Probab=26.69 E-value=20 Score=15.44 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 36899999999999971994899 Q gi|254780588|r 134 PEGYRKAVRLMEMADRFKIPVIS 156 (317) Q Consensus 134 p~g~rKa~r~~~~A~~f~lPiv~ 156 (317) |.|.-|..-.-.+|++|++|.|+ T Consensus 12 ~PGSGK~T~a~~Lae~~g~~~is 34 (186) T 3cm0_A 12 PPGAGKGTQASRLAQELGFKKLS 34 (186) T ss_dssp CTTSCHHHHHHHHHHHHTCEEEC T ss_pred CCCCCHHHHHHHHHHHHCCEEEC T ss_conf 99998799999999986990763 No 152 >2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A Probab=26.40 E-value=23 Score=15.03 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=50.7 Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHH-HCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCC Q ss_conf 2699999888763500223799986-225450672275334789729999887538008999845877502344202677 Q gi|254780588|r 53 SKLTPWQKTQVSRHPNRPHYIDYIN-SLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGS 131 (317) Q Consensus 53 ~~Lt~w~~v~~aRh~~Rp~~~dyi~-~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~ 131 (317) +|++|.+-.+++++-+ +.++ .-+|.|+-+||..--..- |-...|..=+.+||++.|-| |-.+. T Consensus 63 s~m~~~~w~~la~~i~-----~~~~~~~~dG~VVtHGTDTm~~T-A~~Ls~~l~~~kPVVlTGaq----------~P~~~ 126 (332) T 2wlt_A 63 QDMNEEIWFKLAQRAQ-----ELLDDSRIQGVVITHGTDTLEES-AYFLNLVLHSTKPVVLVGAM----------RNASS 126 (332) T ss_dssp GGCCHHHHHHHHHHHH-----HHHTSTTCCEEEEECCSSSHHHH-HHHHHHHCCCSSCEEEECCS----------SCTTS T ss_pred HHCCHHHHHHHHHHHH-----HHHCCCCCCEEEEECCCCHHHHH-HHHHHHHHCCCCCEEEECCC----------CCCCC T ss_conf 4589999999999999-----98405898869997786179999-99999986479977996899----------77666 Q ss_pred CCHHHHHHHHHHHHHHH--HCCCCEEEE Q ss_conf 68368999999999999--719948999 Q gi|254780588|r 132 PRPEGYRKAVRLMEMAD--RFKIPVISF 157 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~--~f~lPiv~l 157 (317) +..+|.+-..-.+.+|- +...|=|++ T Consensus 127 ~~sDg~~NL~~Av~~A~~~~~~~~gV~v 154 (332) T 2wlt_A 127 LSADGALNLYEAVSVAVNEKSANKGVLV 154 (332) T ss_dssp TTCSHHHHHHHHHHHHHCGGGTTSCSEE T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 7976899999999998373236885699 No 153 >1t0k_B YL32, RP73, 60S ribosomal protein L30; joint and X-RAY refinement, ribosomal protein L30E, MBP fusion protein, ribosome; HET: MTT; 3.24A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Probab=26.20 E-value=22 Score=15.10 Aligned_cols=23 Identities=22% Similarity=0.028 Sum_probs=18.1 Q ss_pred HHHHHHHHHHHCCCCEEEEEECC Q ss_conf 99999999997199489999535 Q gi|254780588|r 139 KAVRLMEMADRFKIPVISFIDTA 161 (317) Q Consensus 139 Ka~r~~~~A~~f~lPiv~lvDtp 161 (317) ...++..+|+..++|++.|..|. T Consensus 52 ~~~~i~~~~~~~~Vpv~~~~~t~ 74 (105) T 1t0k_B 52 RKSELEYYAMLSKTKVYYFQGGN 74 (105) T ss_dssp HHHHHHHHHHHHTCEEEECSSCH T ss_pred HHHHHHHHHHHCCCCEEEECCCH T ss_conf 99999999986599819967899 No 154 >2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A* Probab=25.79 E-value=30 Score=14.17 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 3689999999999997199489999535 Q gi|254780588|r 134 PEGYRKAVRLMEMADRFKIPVISFIDTA 161 (317) Q Consensus 134 p~g~rKa~r~~~~A~~f~lPiv~lvDtp 161 (317) -.|+.|...+++.|-+++++.||+=--+ T Consensus 30 ~~G~~~l~~ii~~~~~~gI~~lTvYafS 57 (227) T 2vg0_A 30 RMGAAKIAEMLRWCHEAGIELATVYLLS 57 (227) T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 9999999999999998599889999864 No 155 >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Probab=25.72 E-value=23 Score=14.94 Aligned_cols=15 Identities=47% Similarity=0.709 Sum_probs=11.4 Q ss_pred EEEEECCCCCCCCCC Q ss_conf 999953532467784 Q gi|254780588|r 155 ISFIDTAGAYPGVDA 169 (317) Q Consensus 155 v~lvDtpGa~~g~~a 169 (317) |+||||||...+... T Consensus 156 i~lVDTPG~~~~~~~ 170 (550) T 2qpt_A 156 ISIIDTPGILSGAKQ 170 (550) T ss_dssp CEEEECCCBCC---- T ss_pred EEEEECCCCCCCCCC T ss_conf 389737866667651 No 156 >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* Probab=25.71 E-value=30 Score=14.16 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=12.2 Q ss_pred CCCEEEEEECCCCCCC Q ss_conf 9948999953532467 Q gi|254780588|r 151 KIPVISFIDTAGAYPG 166 (317) Q Consensus 151 ~lPiv~lvDtpGa~~g 166 (317) .+|-++||||||..-. T Consensus 129 ~l~~l~lvDtPG~~~~ 144 (315) T 1jwy_B 129 HVVNLTLVDLPGITKV 144 (315) T ss_dssp TSCSEEEEECCCCC-- T ss_pred CCCCEEEEECCCCCCC T ss_conf 9875379826875555 No 157 >2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Probab=25.50 E-value=17 Score=15.89 Aligned_cols=10 Identities=0% Similarity=0.086 Sum_probs=3.9 Q ss_pred EEEECCCCEE Q ss_conf 0220467401 Q gi|254780588|r 214 VYMLEHAIYS 223 (317) Q Consensus 214 v~m~~~s~ys 223 (317) ++.+.|+-|. T Consensus 485 ivV~NN~g~g 494 (573) T 2iht_A 485 TVVVNNDTNG 494 (573) T ss_dssp EEEEECSBCH T ss_pred EEEEECCCCH T ss_conf 9999799864 No 158 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=25.10 E-value=31 Score=14.09 Aligned_cols=28 Identities=18% Similarity=0.446 Sum_probs=20.5 Q ss_pred EEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHH Q ss_conf 887538008999845877502344202677683689999999999 Q gi|254780588|r 102 LARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEM 146 (317) Q Consensus 102 ~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~ 146 (317) |-.+.|++|+|||. | +.++||+..|.+. T Consensus 26 fl~L~~k~VLVVGg--------------G---~vA~rKi~~Ll~~ 53 (223) T 3dfz_A 26 MLDLKGRSVLVVGG--------------G---TIATRRIKGFLQE 53 (223) T ss_dssp EECCTTCCEEEECC--------------S---HHHHHHHHHHGGG T ss_pred EEECCCCEEEEECC--------------C---HHHHHHHHHHHHC T ss_conf 89839985999898--------------8---9999999999748 No 159 >2ve7_C Kinetochore protein NUF2, kinetochore protein SPC24; HEC1, NDC80, nucleus, mitosis, centromere, cell cycle, microtubule, coiled-coil, coiled coil; 2.88A {Homo sapiens} Probab=24.64 E-value=8.1 Score=18.22 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=20.1 Q ss_pred HHHHHCCCCEEEECCCCCCCCCCEEEEEEEE Q ss_conf 9986225450672275334789729999887 Q gi|254780588|r 74 DYINSLFTHFISLAGDRLFGDDPAMQIGLAR 104 (317) Q Consensus 74 dyi~~l~~df~el~GDr~~~dD~aii~G~a~ 104 (317) -|+..+..+..+|++| |.-+|.+|.|+-. T Consensus 190 ~~v~~L~~~Is~l~~~--y~~~~~~~~g~~~ 218 (250) T 2ve7_C 190 VYVAQLYHQVSKIEWE--YECEPGMVKGIHH 218 (250) T ss_dssp HHHHHHHHHHHCCEEC--SCCTTTCEEEEC- T ss_pred HHHHHHHHHHHHHEEE--CCCCCCHHCCEEC T ss_conf 9999999998760220--4578682134343 No 160 >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 Probab=24.58 E-value=32 Score=14.02 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=51.1 Q ss_pred HHHCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 42026776-8368999999999999719948999953532-467784300279999999888623799889999616777 Q gi|254780588|r 125 IKHNFGSP-RPEGYRKAVRLMEMADRFKIPVISFIDTAGA-YPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGS 202 (317) Q Consensus 125 ~~~n~G~~-~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa-~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~s 202 (317) ++.++|+. -|.+|=+.+| ++|++.++++|.=-=..|+ -.|.- + + .+... -.|=| +++|+|-+ T Consensus 221 i~g~gG~~~~~~~fl~~lr--~lc~~~g~llI~DEV~tGfGRtG~~----~---a-----~~~~g-v~PDi-v~~gK~l~ 284 (433) T 1z7d_A 221 IQGEAGVIVPSDNYLQGVY--DICKKYNVLFVADEVQTGLGRTGKL----L---C-----VHHYN-VKPDV-ILLGKALS 284 (433) T ss_dssp SBSTTTSBCCCTTHHHHHH--HHHHHTTCEEEEECTTTTTTTTSSS----S---G-----GGGGT-CCCSE-EEECGGGG T ss_pred CCCCCCCCCCCHHHHHHHH--HHHHHHCCEEEEECCCCCCCCCCCC----C---H-----HHHCC-CCCCE-EEECCCCC T ss_conf 7788898359989999999--9999829899996366688856763----3---5-----76619-98787-87612012 Q ss_pred CCCCCCCC---CCCEE-EEC-CCCEEEE--CHHHHHHH Q ss_conf 75421133---20002-204-6740121--55442244 Q gi|254780588|r 203 GGAMGIAA---ANFVY-MLE-HAIYSVI--SPEGAASI 233 (317) Q Consensus 203 GGA~a~~~---~d~v~-m~~-~s~ysvi--sPEg~AsI 233 (317) ||.++++. .+.+. .+. ....++- +|=+||+- T Consensus 285 gG~~p~~~v~~~~~i~~~~~~~~~~~T~~g~Pla~aaa 322 (433) T 1z7d_A 285 GGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASIC 322 (433) T ss_dssp TTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHH T ss_conf 89877443346199997516888676889985775677 No 161 >1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ... Probab=24.18 E-value=23 Score=14.96 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=20.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 975314557899999999999974223 Q gi|254780588|r 1 MRHYLDFEEPISDLEAKIHELKKLSRE 27 (317) Q Consensus 1 M~~yLdFEkpI~eLe~kI~eL~~~~~~ 27 (317) |.-|.+||.| ++|.++|.++...... T Consensus 1 ~~~~~~~~~~-e~l~~ki~~~l~~a~k 26 (120) T 1vq8_F 1 MPVYVDFDVP-ADLEDDALEALEVARD 26 (120) T ss_dssp -CCSCCSCCC-HHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHHH T ss_conf 9844146797-9999999999999998 No 162 >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Probab=23.72 E-value=33 Score=13.91 Aligned_cols=109 Identities=23% Similarity=0.209 Sum_probs=57.8 Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCC----CC---CCCH-------------------HHHHHHHH-HH-HHHHCCC Q ss_conf 99999999999719948999953532467----78---4300-------------------27999999-98-8862379 Q gi|254780588|r 138 RKAVRLMEMADRFKIPVISFIDTAGAYPG----VD---AEAR-------------------GQGEAIAR-AT-EMCLKLQ 189 (317) Q Consensus 138 rKa~r~~~~A~~f~lPiv~lvDtpGa~~g----~~---aE~~-------------------G~~~aia~-~l-~~~~~~~ 189 (317) =|..=.+++|.+|+-.||+. |+==.|-| .. .||+ +.-..-|+ .+ ...+.-+ T Consensus 22 GKs~La~~lA~~~~~eIIs~-DS~QvYk~l~IgTaKp~~~e~~~i~Hhlid~~~p~e~~sv~~f~~~a~~~i~~i~~~~k 100 (316) T 3foz_A 22 GKTALAIELRKILPVELISV-DSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGR 100 (316) T ss_dssp CHHHHHHHHHHHSCEEEEEC-CTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHCCCEEEEC-CHHHHHCCCCEEECCCCHHHHHCCCEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHCCC T ss_conf 79999999999869979940-26876199987778999999927997774566888755299999999989999996599 Q ss_pred CCEEEEEECCCCCCCCC---CCCCC-----CCE-------EEEC------CCCEEEECHHHHHHHHCCCCHHHHHHHHHC Q ss_conf 98899996167777542---11332-----000-------2204------674012155442244215601225655420 Q gi|254780588|r 190 VPILSIIIGEGGSGGAM---GIAAA-----NFV-------YMLE------HAIYSVISPEGAASILWRDSSRAAQAAIAM 248 (317) Q Consensus 190 vP~i~vv~geg~sGGA~---a~~~~-----d~v-------~m~~------~s~ysvisPEg~AsILwkd~~~a~eAAeal 248 (317) +|+++ ||+|=.+ --+.. |.- ...+ +....-+-|+.++.|-++|..+...|-|.. T Consensus 101 ~pIlV-----GGTglYl~all~g~~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~iDp~~a~~i~~nd~~Ri~RAlEv~ 175 (316) T 3foz_A 101 IPLLV-----GGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEVF 175 (316) T ss_dssp EEEEE-----ESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHHHHHHHHHH T ss_pred CCEEE-----CCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHH T ss_conf 70897-----3517899999829877999997998876543101699999999997399999615966688999999999 Q ss_pred CCCH Q ss_conf 3884 Q gi|254780588|r 249 KIIA 252 (317) Q Consensus 249 klTa 252 (317) ..|. T Consensus 176 ~~tG 179 (316) T 3foz_A 176 FISG 179 (316) T ss_dssp HHHS T ss_pred HHHC T ss_conf 9617 No 163 >1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* Probab=23.65 E-value=28 Score=14.44 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=39.0 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEECCCCEEEECHHHHHHHHCCCCHH---HHHHHHHCCCCHHHHHHC Q ss_conf 99961677775421133200022046740121554422442156012---256554203884899978 Q gi|254780588|r 194 SIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR---AAQAAIAMKIIATDLQDL 258 (317) Q Consensus 194 ~vv~geg~sGGA~a~~~~d~v~m~~~s~ysvisPEg~AsILwkd~~~---a~eAAealklTa~DL~~l 258 (317) ++.+-+|++.|-+++.---.+.-.-..+|+.--+.+...|-|.|+.- |+... ..-|+..|..-- T Consensus 118 ~l~IP~G~aHGf~~L~d~~~i~Y~~s~~y~~~~~~~~~~i~~~Dp~l~i~Wp~~~-~~ilS~kD~~~p 184 (197) T 1nxm_A 118 SIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIKWENLE-EAEVSEADENHP 184 (197) T ss_dssp EEEECTTEEEEEEECSSEEEEEEEESSCCCGGGGGGCEECCTTCTTSSCCCSCST-TCBCCHHHHTSC T ss_pred EEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCEECHHHCCCC T ss_conf 5893698606888625001777883677483336872357289942388999999-788878893899 No 164 >2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, cell shape, cell division; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A Probab=23.52 E-value=33 Score=13.88 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=25.4 Q ss_pred HHHHCCCCCCHHH----HHHHHHHHHHHHHCCCCEEEEE Q ss_conf 4420267768368----9999999999997199489999 Q gi|254780588|r 124 RIKHNFGSPRPEG----YRKAVRLMEMADRFKIPVISFI 158 (317) Q Consensus 124 ~~~~n~G~~~p~g----~rKa~r~~~~A~~f~lPiv~lv 158 (317) |=+++-|+..-+| +.+...+++.|.+++++.||+= T Consensus 68 RwAk~~gl~~~~GH~~G~~~l~~ii~~~~~~GI~~LTvY 106 (284) T 2vg3_A 68 RWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLY 106 (284) T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 999877997779999999999999999998699789999 No 165 >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Probab=23.36 E-value=33 Score=13.86 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=13.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 683689999999999997199489999 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFI 158 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lv 158 (317) +.+.+.+-+.|+.+...++++|+..+| T Consensus 231 Pe~~~l~ea~r~~~~l~~~~i~~~gvV 257 (334) T 3iqw_A 231 PEFLSLYETERMIQELANYGIDTHCIV 257 (334) T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEEEEE T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 985439999999999997599976799 No 166 >2qvb_A Haloalkane dehalogenase 3; alpha-beta hydrolase protein, X-RAY crystallography, TB structural genomics consortium, TBSGC; 1.19A {Mycobacterium tuberculosis H37RV} PDB: 2o2i_A 2o2h_A Probab=23.28 E-value=26 Score=14.59 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=30.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCC----C-CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC Q ss_conf 836899999999999971994899995353246778----4-30027999999988862379988999961677775421 Q gi|254780588|r 133 RPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVD----A-EARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMG 207 (317) Q Consensus 133 ~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~~----a-E~~G~~~aia~~l~~~~~~~vP~i~vv~geg~sGGA~a 207 (317) +...|++.+. .|++.| . |..+|-||.-.... . ...............+..+......+++|- ..||+++ T Consensus 40 ~~~~~~~~~~--~L~~~~--~-vi~~D~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvGh-S~Gg~~a 113 (297) T 2qvb_A 40 SSYLWRNIMP--HLEGLG--R-LVACDLIGMGASDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVLH-DWGSALG 113 (297) T ss_dssp CGGGGTTTGG--GGTTSS--E-EEEECCTTSTTSCCCSSCSTTSSCHHHHHHHHHHHHHHTTCCSCEEEEEE-EHHHHHH T ss_pred CHHHHHHHHH--HHHCCC--E-EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECC-CCCHHHH T ss_conf 8789999999--983598--8-99998898888887543443331000235666656775068875469736-6654899 Q ss_pred CCCC Q ss_conf 1332 Q gi|254780588|r 208 IAAA 211 (317) Q Consensus 208 ~~~~ 211 (317) +..+ T Consensus 114 ~~~a 117 (297) T 2qvb_A 114 FDWA 117 (297) T ss_dssp HHHH T ss_pred HHHH T ss_conf 9999 No 167 >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Probab=23.28 E-value=32 Score=13.96 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=19.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 75314557899999999999974 Q gi|254780588|r 2 RHYLDFEEPISDLEAKIHELKKL 24 (317) Q Consensus 2 ~~yLdFEkpI~eLe~kI~eL~~~ 24 (317) ++|++....+..+++++++|... T Consensus 10 ~~~M~ifdkLe~i~~r~~eLe~~ 32 (371) T 1zbt_A 10 HHHMNIYDQLQAVEDRYEELGEL 32 (371) T ss_dssp -CCCCHHHHHHHHHHHHHHC--- T ss_pred CCCCCHHHHHHHHHHHHHHHHHH T ss_conf 35212999999999999999998 No 168 >2d1p_C TUSB, hypothetical protein YHEL; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.2 Probab=22.90 E-value=32 Score=14.00 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=35.9 Q ss_pred CCCCEEEECCCCEEEECH-HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHH Q ss_conf 320002204674012155-442244215601225655420388489997899652622889844489899999 Q gi|254780588|r 210 AANFVYMLEHAIYSVISP-EGAASILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTIS 281 (317) Q Consensus 210 ~~d~v~m~~~s~ysvisP-Eg~AsILwkd~~~a~eAAealklTa~DL~~lGiID~II~EP~GGAHrd~~~~~~ 281 (317) -.|.++.+++++|..+.- ..+..+. +....+-.=..|+...|+.+.+.+.- ..-|+.++.+ T Consensus 23 ~~D~lLLieDgV~~al~~~~~~~~l~--------~~~~~vy~L~~Dl~ARGl~~~~~~~v---~~Idy~~FV~ 84 (95) T 2d1p_C 23 EGDELLLLQDGVTAAVDGNRYLESLR--------NAPIKVYALNEDLIARGLTGQISNDI---ILIDYTDFVR 84 (95) T ss_dssp TTCEEEECGGGGGGGBTTCTTHHHHH--------TSSSEEEEEHHHHHHTTCTTSBCTTS---EEECHHHHHH T ss_pred CCCEEEEEHHHHHHHHHCCHHHHHHH--------HCCCEEEEEHHHHHHCCCCCCCCCCC---EEECHHHHHH T ss_conf 99989984887999870786899987--------17986999750598649863258884---7877999999 No 169 >1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1 Probab=22.39 E-value=35 Score=13.73 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780588|r 35 EEIRELEAMVCKTL 48 (317) Q Consensus 35 ~ei~~Le~k~~~~~ 48 (317) ++|..||.|.+.+. T Consensus 15 ~qIaeLe~KR~~Lv 28 (33) T 1r48_A 15 HEIADLQAKRTRLV 28 (33) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999998 No 170 >3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp} Probab=22.08 E-value=24 Score=14.83 Aligned_cols=80 Identities=9% Similarity=0.118 Sum_probs=47.0 Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCC Q ss_conf 26999998887635002237999862254506722753347897299998875380089998458775023442026776 Q gi|254780588|r 53 SKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSP 132 (317) Q Consensus 53 ~~Lt~w~~v~~aRh~~Rp~~~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~ 132 (317) +|++|.+-.+++++-.+- .+.-+|.|+=+||..--..-.+ ..-|..-+++||++.|-|+ -.+.+ T Consensus 67 s~~~~~~w~~ia~~i~~~-----~~~~~dG~VVtHGTDTm~~TA~-~Ls~~l~~~kPVVlTGaqr----------P~~~~ 130 (334) T 3nxk_A 67 SNMCDEIWLRLAKKIAKL-----FAEGIDGVVITHGTDTMEETAY-FLNLTIKSDKPVVLVGAMR----------PSTAI 130 (334) T ss_dssp GGCCHHHHHHHHHHHHHH-----HHTTCCEEEEECCSTTHHHHHH-HHHHHCCCCSCEEEECCSS----------CTTST T ss_pred HHCCHHHHHHHHHHHHHH-----HHCCCCEEEEECCCCHHHHHHH-HHHHHHCCCCCEEEECCCC----------CCCCC T ss_conf 227999999999999976-----5458986999788524999999-9999724799769967888----------77877 Q ss_pred CHHHHHHHHHHHHHHH Q ss_conf 8368999999999999 Q gi|254780588|r 133 RPEGYRKAVRLMEMAD 148 (317) Q Consensus 133 ~p~g~rKa~r~~~~A~ 148 (317) ..+|-+-....+.+|- T Consensus 131 ~sDg~~NL~~Av~~A~ 146 (334) T 3nxk_A 131 SADGPKNLYNAVALVV 146 (334) T ss_dssp TCSHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH T ss_conf 8528999999999985 No 171 >2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A {Rauvolfia serpentina} PDB: 2jf6_A Probab=21.95 E-value=35 Score=13.67 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=37.4 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC-C--------CCCHH--HHHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 683689999999999997199489999535324677-8--------43002--799999998886237998899996 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGV-D--------AEARG--QGEAIARATEMCLKLQVPILSIII 197 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~-~--------aE~~G--~~~aia~~l~~~~~~~vP~i~vv~ 197 (317) ..|+|.++.++ ++.++++.|+|++....=+.... . -+.|- ....+.....++. -.||++.-.. T Consensus 391 I~P~GL~~~L~--~~~~rY~~P~I~ITENG~a~~d~~~~~~~~~i~D~~Ri~yl~~hL~~v~~Ai~-dGv~V~GY~~ 464 (532) T 2jf7_A 391 VVPWGLYKLLV--YTKETYHVPVLYVTESGMVEENKTKILLSEARRDAERTDYHQKHLASVRDAID-DGVNVKGYFV 464 (532) T ss_dssp ECHHHHHHHHH--HHHHHHCCSCEEEEEECCCEECCTTSCHHHHTCCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEE T ss_pred ECCHHHHHHHH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEE T ss_conf 68299999999--99987199808996287446787665656774777899999999999999998-7999898701 No 172 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=21.88 E-value=35 Score=13.66 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=47.4 Q ss_pred HHHCCCCHHHHHHHHHCCCCH-------HHHHHCCCCCEEECCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 442156012256554203884-------89997899652622889844----4898999999999999999998589 Q gi|254780588|r 232 SILWRDSSRAAQAAIAMKIIA-------TDLQDLSIIDGIIPEPIGGA----HRNPAQTISSVGEIISQFLSETSTY 297 (317) Q Consensus 232 sILwkd~~~a~eAAealklTa-------~DL~~lGiID~II~EP~GGA----Hrd~~~~~~~lk~~i~~~L~~L~~~ 297 (317) .++-+.+..+.+.|+.++++. ..|.+.|+|-.+..+.-+-. ..++.+..+.+++.+.+.+.++.+. T Consensus 28 ~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~~~~~~~~~~~~~~~~~~e~l~~i~~~i~~~l~elek~ 104 (109) T 1sfx_A 28 LLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEIERIEKM 104 (109) T ss_dssp HHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99804888799999997567018999999999599979874257886554336680016899999999999999987 No 173 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F Probab=21.36 E-value=36 Score=13.59 Aligned_cols=26 Identities=35% Similarity=0.240 Sum_probs=15.9 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 999999999719948999953532467 Q gi|254780588|r 140 AVRLMEMADRFKIPVISFIDTAGAYPG 166 (317) Q Consensus 140 a~r~~~~A~~f~lPiv~lvDtpGa~~g 166 (317) +.+.++.|..-+.-+| ||||+|-.+. T Consensus 169 ~~~a~~~~~~~~~D~v-lIDTaGR~~~ 194 (297) T 1j8m_F 169 AKRGVEKFLSEKMEII-IVDTAGRHGY 194 (297) T ss_dssp HHHHHHHHHHTTCSEE-EEECCCSCCT T ss_pred HHHHHHHHHHCCCCEE-EECCCCCCCC T ss_conf 9999999985599889-9548776752 No 174 >2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Probab=21.33 E-value=36 Score=13.59 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=27.4 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 228898444898999999999999999998589 Q gi|254780588|r 265 IPEPIGGAHRNPAQTISSVGEIISQFLSETSTY 297 (317) Q Consensus 265 I~EP~GGAHrd~~~~~~~lk~~i~~~L~~L~~~ 297 (317) |+-|.||-..++..++..+..++...++.|.+- T Consensus 133 I~DP~~~~~e~f~~~~~~I~~~i~~l~~~L~~e 165 (167) T 2fek_A 133 IPDPYRKSRETFAAVYTLLERSARQWAQALNAE 165 (167) T ss_dssp CCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 899998799999999999999999999998767 No 175 >4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1 Probab=20.98 E-value=21 Score=15.27 Aligned_cols=81 Identities=9% Similarity=0.135 Sum_probs=47.0 Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHH-HCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCC Q ss_conf 2699999888763500223799986-225450672275334789729999887538008999845877502344202677 Q gi|254780588|r 53 SKLTPWQKTQVSRHPNRPHYIDYIN-SLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGS 131 (317) Q Consensus 53 ~~Lt~w~~v~~aRh~~Rp~~~dyi~-~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~ 131 (317) +|++|-+-++++++-.+ -++ .=+|.|+-+||..--..-.+.+. +..=.++||++.|-| |..+. T Consensus 68 s~m~~~~w~~la~~I~~-----~~~~~~~dG~VVtHGTDTm~yTA~~Ls-ll~~~~kPVVlTGSq----------rP~~~ 131 (337) T 4pga_A 68 ESITNDDLLKLGKRVAE-----LADSNDVDGIVITHGTDTLEETAYFLN-LVQKTDKPIVVVGSM----------RPGTA 131 (337) T ss_dssp GGCCHHHHHHHHHHHHH-----HHHCTTCSEEEEECCSTTHHHHHHHHH-HHCCCCSCEEEECCS----------SCTTS T ss_pred CCCCHHHHHHHHHHHHH-----HHHCCCCCEEEEECCCCHHHHHHHHHH-HHHCCCCCEEEECCC----------CCCCC T ss_conf 00799999999999999-----864578876999778434999999999-975579977993688----------88757 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 683689999999999997 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADR 149 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~ 149 (317) +..+|.+-..-.+.+|-. T Consensus 132 ~~sDa~~NL~~Av~~A~~ 149 (337) T 4pga_A 132 MSADGMLNLYNAVAVASN 149 (337) T ss_dssp TTCSHHHHHHHHHHHHTC T ss_pred CCCHHHHHHHHHHHHHHC T ss_conf 785078899999999837 No 176 >2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Probab=20.97 E-value=37 Score=13.54 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=22.0 Q ss_pred HHHHH-CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 99997-1994899995353246778430027999999988862379988999961677 Q gi|254780588|r 145 EMADR-FKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGG 201 (317) Q Consensus 145 ~~A~~-f~lPiv~lvDtpGa~~g~~aE~~G~~~aia~~l~~~~~~~vP~i~vv~geg~ 201 (317) .+|.. .+.|||.++-=.+|.-+.. .|......+.|++.||+.-++ T Consensus 432 ~~a~~~~~~~vv~i~GDgsf~~~~~------------~L~ta~~~~lpi~ivV~NN~g 477 (563) T 2uz1_A 432 QVADLEAGRRTILVTGDGSVGYSIG------------EFDTLVRKQLPLIVIIMNNQS 477 (563) T ss_dssp HHHHHHHTCEEEEEEEHHHHGGGTT------------HHHHHHHHTCCCEEEEEECSB T ss_pred HHHCCCCCCEEEEEECCCHHHCCHH------------HHHHHHHHCCCCEEEEEECCC T ss_conf 6505489973799977704424699------------999999959891899997996 No 177 >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* Probab=20.86 E-value=37 Score=13.52 Aligned_cols=48 Identities=6% Similarity=-0.012 Sum_probs=26.1 Q ss_pred CCEEEEEECCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 948999953532467784-300279999999888623799889999616 Q gi|254780588|r 152 IPVISFIDTAGAYPGVDA-EARGQGEAIARATEMCLKLQVPILSIIIGE 199 (317) Q Consensus 152 lPiv~lvDtpGa~~g~~a-E~~G~~~aia~~l~~~~~~~vP~i~vv~ge 199 (317) .|-++||||||..-.... +.......+-..+..+..-....|-+|... T Consensus 124 ~~~l~lvD~PG~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~il~v~~a 172 (299) T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA 172 (299) T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEES T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 8762565257654435678505679999999999853877269999427 No 178 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D* Probab=20.84 E-value=37 Score=13.52 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=14.2 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEEECC Q ss_conf 683689999999999997199489999535 Q gi|254780588|r 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTA 161 (317) Q Consensus 132 ~~p~g~rKa~r~~~~A~~f~lPiv~lvDtp 161 (317) ..|+.|.+++- ++..+.+--+|.|-.|+ T Consensus 70 ~~~~~~a~~l~--~~i~~~~p~~VL~~~T~ 97 (320) T 1o97_D 70 FDPDVFEASVS--ALIAAHNPSVVLLPHSV 97 (320) T ss_dssp CCHHHHHHHHH--HHHHHHCCSEEEEECSH T ss_pred CCHHHHHHHHH--HHHHHCCCCEEEEECCC T ss_conf 35477999999--99986389889994354 No 179 >1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens} Probab=20.81 E-value=37 Score=13.52 Aligned_cols=36 Identities=39% Similarity=0.478 Sum_probs=22.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 45578999999999999742236667769999999999999 Q gi|254780588|r 6 DFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCK 46 (317) Q Consensus 6 dFEkpI~eLe~kI~eL~~~~~~~~~~~~~~ei~~Le~k~~~ 46 (317) ||-|-+.--+++|.+|...-.+. .+||++|..++.+ T Consensus 15 dfakilllkeerikelerrl~ek-----e~eiqelkrklhk 50 (67) T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEK-----EEEIQELKRKLHK 50 (67) T ss_dssp --CHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH T ss_conf 99999997799999999998733-----8999999999985 No 180 >1wf3_A GTP-binding protein; GTPase, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus HB8} SCOP: c.37.1.8 d.52.3.1 Probab=20.40 E-value=38 Score=13.46 Aligned_cols=10 Identities=50% Similarity=0.793 Sum_probs=5.7 Q ss_pred EEEEECCCCC Q ss_conf 9999535324 Q gi|254780588|r 155 ISFIDTAGAY 164 (317) Q Consensus 155 v~lvDtpGa~ 164 (317) +.|+||||.. T Consensus 57 iv~vDTPGi~ 66 (301) T 1wf3_A 57 IVFVDTPGLH 66 (301) T ss_dssp EEEEECCCCC T ss_pred EEEECCCCCC T ss_conf 9994589842 No 181 >1q1g_A Uridine phosphorylase putative; transition state complex, transferase; HET: MTI; 2.02A {Plasmodium falciparum 3D7} SCOP: c.56.2.1 PDB: 1nw4_A* 3fow_A* Probab=20.25 E-value=38 Score=13.44 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=47.2 Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEECCCEEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 99986225450672275334789729999887538008999845877502344202677683689999999999997199 Q gi|254780588|r 73 IDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKI 152 (317) Q Consensus 73 ~dyi~~l~~df~el~GDr~~~dD~aii~G~a~i~g~~v~vig~~kG~~~~~~~~~n~G~~~p~g~rKa~r~~~~A~~f~l 152 (317) -++|..++++..++.--| .+.+--|+++|++|.|+.+ ||-.|...- -+-.++ +++. T Consensus 30 a~~ia~~le~~~~v~~~R------~~~~~tG~ykG~~V~v~~~--------------GmG~psaai---~~~eL~-~~g~ 85 (276) T 1q1g_A 30 VDKIKVVCDSYVDLAYNR------EYKSVECHYKGQKFLCVSH--------------GVGSAGCAV---CFEELC-QNGA 85 (276) T ss_dssp HHHHHTTSSEEEEEEEET------TEEEEEEEETTEEEEEEEC--------------CSSHHHHHH---HHHHHH-TTTC T ss_pred HHHHHHHHCCCEEEECCC------CEEEEEEEECCEEEEEEEC--------------CCCHHHHHH---HHHHHH-HCCC T ss_conf 999999818864652038------7699999998999999835--------------645888999---999998-6299 Q ss_pred CEEEEEECCCCCC Q ss_conf 4899995353246 Q gi|254780588|r 153 PVISFIDTAGAYP 165 (317) Q Consensus 153 Piv~lvDtpGa~~ 165 (317) -.|-.+-|.|++- T Consensus 86 ~~iIriGtaGgl~ 98 (276) T 1q1g_A 86 KVIIRAGSCGSLQ 98 (276) T ss_dssp CEEEEEEEEEESC T ss_pred CEEEEECCCCCCC T ss_conf 8899935445656 No 182 >2w6k_A COBE; biosynthetic protein, cobalamin, complete proteome, vitamin B12; 1.70A {Pseudomonas aeruginosa} SCOP: c.151.1.1 PDB: 2bsn_A 2w6l_A Probab=20.16 E-value=38 Score=13.42 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.4 Q ss_pred HHHHHHHHCCCCEEEE Q ss_conf 9999999719948999 Q gi|254780588|r 142 RLMEMADRFKIPVISF 157 (317) Q Consensus 142 r~~~~A~~f~lPiv~l 157 (317) -++++|.++++|+++| T Consensus 59 gl~~~A~~l~~p~~~~ 74 (145) T 2w6k_A 59 GLRQLATLLERPVHFL 74 (145) T ss_dssp HHHHHHHHHTSCEEEE T ss_pred HHHHHHHHHCCCEEEE T ss_conf 9999999939985986 No 183 >3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} Probab=20.06 E-value=38 Score=13.41 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC Q ss_conf 689999999999997199489999535324677 Q gi|254780588|r 135 EGYRKAVRLMEMADRFKIPVISFIDTAGAYPGV 167 (317) Q Consensus 135 ~g~rKa~r~~~~A~~f~lPiv~lvDtpGa~~g~ 167 (317) +..+...+++++|..++.|+|.+. ||..++. T Consensus 81 ~~i~~~~~~i~~a~~lG~~~i~~~--~g~~~~~ 111 (284) T 3ju2_A 81 KAIDDNRRAVDEAAELGADCLVLV--AGGLPGG 111 (284) T ss_dssp HHHHHHHHHHHHHHHHTBSCEEEE--CBCCCTT T ss_pred HHHHHHHHHHHHHHHHCCCEEEEC--CCCCCCC T ss_conf 999999999999999499836956--7986678 Done!