RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase
carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
(317 letters)
>gnl|CDD|180223 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 530 bits (1368), Expect = e-151
Identities = 176/317 (55%), Positives = 234/317 (73%), Gaps = 1/317 (0%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
M +YLDFE+PI++LEAKI EL+ ++ + + D SEEI LE + + +IYS LTPWQK
Sbjct: 2 MLNYLDFEKPIAELEAKIEELRAVAEDS-DVDLSEEIERLEKKLEELTKKIYSNLTPWQK 60
Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
Q++RHP RP+ +DYI LFT F L GDR F DD A+ GLAR +G+PV +IG +KG D
Sbjct: 61 VQLARHPQRPYTLDYIELLFTDFTELHGDRAFADDKAIVGGLARLNGRPVMVIGHQKGRD 120
Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180
TK +I+ NFG PRPEGYRKA+RLM+MA++F +P+I+FIDT GAYPG+ AE RGQ EAIAR
Sbjct: 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIAR 180
Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240
+L+VPI+ +IGEGGSGGA+ I + V MLE++ YSVISPEG ASILW+D+S+
Sbjct: 181 NLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKDASK 240
Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300
A +AA AMKI A DL++L IID IIPEP+GGAHR+P +++ E + + L+E S
Sbjct: 241 APEAAEAMKITAQDLKELGIIDEIIPEPLGGAHRDPEAAAAALKEALLEALAELKGLSPE 300
Query: 301 EIREHRRQKYLNIGRNL 317
E+ E R +K+++IGR L
Sbjct: 301 ELLERRYEKFMSIGRFL 317
>gnl|CDD|161909 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta.
Length = 316
Score = 387 bits (996), Expect = e-108
Identities = 165/314 (52%), Positives = 225/314 (71%), Gaps = 1/314 (0%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
M +YLDFE+PI++LEAKI L+ SR++ + D SEEI LE + +I+S L WQ+
Sbjct: 2 MANYLDFEKPIAELEAKIESLRARSRDE-DVDLSEEIERLEKRSVELTKKIFSNLGAWQR 60
Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
Q++RHP+RP+ +DYI +F F LAGDR + DD A+ G+AR G+PV +IG +KG D
Sbjct: 61 LQLARHPDRPYTLDYIELIFDDFFELAGDRAYADDKAIVGGIARLDGRPVVVIGHQKGRD 120
Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180
TK +++ NFG P PEGYRKA+RLM+MA+RFK+P+I+FIDT GAYPG+ AE RGQ EAIAR
Sbjct: 121 TKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIAR 180
Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240
+L VP++ +IGEGGSGGA+ I + V MLE++ YSVISPEG A+ILW+D+S+
Sbjct: 181 NLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKDASK 240
Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300
A +AA AMKI A DL++L +ID IIPEP+GGAHRNP +S+ E + L+ S
Sbjct: 241 APKAAEAMKITAPDLKELGLIDSIIPEPLGGAHRNPLAAAASLKEQLLADLATLDQLSTE 300
Query: 301 EIREHRRQKYLNIG 314
E++ R QK +++G
Sbjct: 301 ELKNRRYQKLMSLG 314
>gnl|CDD|178769 PLN03230, PLN03230, acetyl-coenzyme A carboxylase carboxyl
transferase; Provisional.
Length = 431
Score = 305 bits (783), Expect = 8e-84
Identities = 134/310 (43%), Positives = 198/310 (63%), Gaps = 1/310 (0%)
Query: 5 LDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVS 64
L FE+PI DLE +I E+++L+ + DFS +I ELE + E+YS+LTP Q+ V+
Sbjct: 76 LPFEKPIVDLENRIDEVRELANKT-GVDFSAQIAELEERYDQVRRELYSRLTPVQRLSVA 134
Query: 65 RHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSR 124
RHPNRP ++D++ ++ ++ L GDR DDPA+ G+ G IG +KG +TK
Sbjct: 135 RHPNRPTFLDHVLNMTDKWVELHGDRAGFDDPAIVCGIGSMEGMSFMFIGHQKGRNTKEN 194
Query: 125 IKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEM 184
I NF P+P GYRKA+R M A++F P+++F+DT GAY G+ AE GQGEAIA
Sbjct: 195 IYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLRE 254
Query: 185 CLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSRAAQA 244
L+VPI++ +IGEGGSGGA+ I N + M+E+A+Y V SPE A+ILW+ ++ A +A
Sbjct: 255 MFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSAAAAPKA 314
Query: 245 AIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304
A A++I A +L L ++D I+PEP+GGAH +P Q ++ E+I + + E E+ +
Sbjct: 315 AEALRITAAELVKLGVVDEIVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQ 374
Query: 305 HRRQKYLNIG 314
R K+ IG
Sbjct: 375 DRAAKFRKIG 384
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 289 bits (740), Expect = 8e-79
Identities = 139/310 (44%), Positives = 199/310 (64%), Gaps = 1/310 (0%)
Query: 5 LDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVS 64
LDFE+P+ DLE KI +++K++ E DFS++I LE+ + L ++Y+ LTP Q+ ++
Sbjct: 97 LDFEKPLVDLEKKIVDVRKMANE-TGLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIA 155
Query: 65 RHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSR 124
RHPNRP ++D+I ++ F+ L GDR DDPA+ G+ G+ IG +KG +TK
Sbjct: 156 RHPNRPTFLDHIFNITDKFVELHGDRAGYDDPAIVTGIGTIDGKRYMFIGHQKGRNTKEN 215
Query: 125 IKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEM 184
I NFG P P GYRKA+R+M AD P+++FIDT GAY + +E GQGEAIA
Sbjct: 216 IMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRT 275
Query: 185 CLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSRAAQA 244
L+VPI+SI+IGEGGSGGA+ I AN + MLE+A++ V SPE A+ILW+ + A +A
Sbjct: 276 MFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKSAKAAPKA 335
Query: 245 AIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIRE 304
A ++I A +L L I DGIIPEP+GGAH +P+ T + I++ + E E+ +
Sbjct: 336 AEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLK 395
Query: 305 HRRQKYLNIG 314
HR K+ IG
Sbjct: 396 HRMLKFRKIG 405
>gnl|CDD|183435 PRK12319, PRK12319, acetyl-CoA carboxylase subunit alpha;
Provisional.
Length = 256
Score = 260 bits (665), Expect = 5e-70
Identities = 115/247 (46%), Positives = 165/247 (66%), Gaps = 4/247 (1%)
Query: 64 SRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKS 123
+R R +DY +F F+ L GDR F DD A+ G+ GQPV ++G +KG + +
Sbjct: 11 ARDQGRLTTLDYATLIFDDFMELHGDRHFRDDGAVVGGIGYLAGQPVTVVGIQKGKNLQD 70
Query: 124 RIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATE 183
+K NFG P PEGYRKA+RLM+ A++F PV++FI+TAGAYPGV AE RGQGEAIAR
Sbjct: 71 NLKRNFGQPHPEGYRKALRLMKQAEKFGRPVVTFINTAGAYPGVGAEERGQGEAIARNLM 130
Query: 184 MCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSRAAQ 243
L+VPI++IIIGEGGSGGA+ +A A+ V+MLE+ +Y+V+SPEG ASILW+D SRA +
Sbjct: 131 EMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATE 190
Query: 244 AAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSETEIR 303
AA MKI A +L ++ ++D +IPE ++ I + + + + L++ S ++
Sbjct: 191 AAELMKITAGELLEMGVVDKVIPE----HGYFSSEIIDMIKKNLIEELAQLSQKPLEQLL 246
Query: 304 EHRRQKY 310
E R Q++
Sbjct: 247 EERYQRF 253
>gnl|CDD|130187 TIGR01117, mmdA, methylmalonyl-CoA decarboxylase alpha subunit.
This model describes methymalonyl-CoA decarboxylase
aplha subunit in archaea and bacteria. Metylmalonyl-CoA
decarboxylase Na+ pump is a representative of a class of
Na+ transport decarboxylases that couples the energy
derived by decarboxylation of carboxylic acid substrates
to drive the extrusion of Na+ ion across the membrane.
Length = 512
Score = 69.5 bits (170), Expect = 1e-12
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 96 PAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVI 155
P + AR +GQ V II + K G + K R + D F IP++
Sbjct: 303 PNIITCFARINGQSVGIIANQP--------KVMAGCLDIDSSDKIARFIRFCDAFNIPIV 354
Query: 156 SFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGE--GGSGGAMGIA--AA 211
+F+D G PGV+ E G A+ + VP ++II + GG+ AM A
Sbjct: 355 TFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGA 414
Query: 212 NFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMK 249
+ VY A +V+ P GAA+I++R + A+ A +
Sbjct: 415 DQVYAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATR 452
Score = 39.4 bits (92), Expect = 0.001
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 139 KAVRLMEMADRFKIPVISFIDTAGA--YPGVDAEARGQGEAIARATEMCLKLQVPILSII 196
K V++M++A + PV+ D+ GA VDA G G+ R T VP +S I
Sbjct: 105 KIVKIMDLAMKMGAPVVGLNDSGGARIQEAVDALK-GYGDIFYRNT--IASGVVPQISAI 161
Query: 197 IGEGGSGGAMGIAAANFVYMLEHAIYSVIS 226
+G G A +F+YM+++ I+
Sbjct: 162 MGPCAGGAVYSPALTDFIYMVDNTSQMFIT 191
>gnl|CDD|178415 PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.
Length = 569
Score = 47.1 bits (112), Expect = 6e-06
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 101 GLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDT 160
G AR +GQPV IIG N G E K +E+ + IP++ +
Sbjct: 364 GFARIYGQPVGIIG-------------NNGILFTESALKGAHFIELCAQRGIPLLFLQNI 410
Query: 161 AGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIA------AANFV 214
G G +EA G +A A+ +VP ++II+ GGS GA + NF+
Sbjct: 411 TGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIV--GGSFGAGNYGMCGRAYSPNFL 468
Query: 215 YMLEHAIYSVISPEGAASIL 234
+M +A V+ AA +L
Sbjct: 469 FMWPNARIGVMGGAQAAGVL 488
Score = 40.6 bits (95), Expect = 6e-04
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 25/118 (21%)
Query: 61 TQVSRHPNRPHY-----IDYI---NSLFTHFISLAGDRLFGDD-PAMQI--GLARFHGQP 109
V RH +R ID + S F LAG L+G+D P+ I G+ HG+
Sbjct: 71 EAVKRHRSRNKLLPRERIDRLLDPGSPFLELSQLAGHELYGEDLPSGGIVTGIGPVHGRL 130
Query: 110 VAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAY 164
+ + KG G+ P +K +R E+A + ++P I +D+ GA
Sbjct: 131 CMFVANDPTVKG-----------GTYYPITVKKHLRAQEIAAQCRLPCIYLVDSGGAN 177
>gnl|CDD|163147 TIGR03134, malonate_gamma, malonate decarboxylase, gamma subunit.
Members of this protein family are the gamma subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase, while the gamma subunit
appears either to mediate subunit interaction or to act
as a co-decarboxylase with the beta subunit. The beta
and gamma subunits exhibit some local sequence
similarity.
Length = 238
Score = 33.8 bits (78), Expect = 0.058
Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 35/232 (15%)
Query: 74 DYINSLF--THFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGS 131
D++ +LF H ++ L G A G V +IG + + +
Sbjct: 4 DWLAALFPNGHEVAGDPGVLVGS--------AELAGGKVTVIG----VVPDAEVGLD--- 48
Query: 132 PRPEGYRKAVRLMEM--ADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQ 189
E A ++++ AD K P++ +DT G E G +A+A + +
Sbjct: 49 ---EALALAQAVLDVIEADD-KRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALAR 104
Query: 190 V---PILSIIIGEGGSGG--AMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSRAAQA 244
+ P++ +I G+ SG A G+ A+ + L A+ V+ E A + R
Sbjct: 105 LAGHPVIGLIYGKAISGAFLAHGL-QADRIIALPGAMVHVMDLESMARVTKRSVEELEAL 163
Query: 245 AIAMKIIATDLQD---LSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSE 293
A + + A +++ L + ++ A PA +++V ++ + +
Sbjct: 164 AKSSPVFAPGIENFVKLGGVHALLDVA--DADA-PAAQLAAVLAALAAAIQD 212
>gnl|CDD|162510 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
synthase II. Phosphoribosylformylglycinamidine synthase
is a single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II.
Length = 715
Score = 31.9 bits (73), Expect = 0.22
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
Query: 128 NFGSP-RPEGY---RKAVR-LMEMADRFKIPVIS 156
NFG+P RPE Y +AV+ L + PV+
Sbjct: 478 NFGNPERPEVYWQFVEAVKGLGDACRALGTPVVG 511
>gnl|CDD|115487 pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE). This
family consists of several bacterial malonate
decarboxylase gamma subunit proteins. Malonate
decarboxylase of Klebsiella pneumoniae consists of four
different subunits and catalyses the conversion of
malonate plus H+ to acetate and CO2. The catalysis
proceeds via acetyl and malonyl thioester residues with
the phosphribosyl-dephospho-CoA prosthetic group of the
acyl carrier protein (ACP) subunit. MdcD and E together
probably function as malonyl-S-ACP decarboxylase.
Length = 234
Score = 31.6 bits (72), Expect = 0.30
Identities = 35/162 (21%), Positives = 60/162 (37%), Gaps = 32/162 (19%)
Query: 89 DRLFGDDPAMQIGLARFHGQ-------PVAIIG----QEKGSDTKSRIKHNFGSPRPEGY 137
LF D + G+ PVA+IG E G E
Sbjct: 4 AALFPDGHGIPASGDVLDGEATTRDVGPVAVIGTANGGEVGVL--------------EAI 49
Query: 138 RKAVRLME-MADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQV---PIL 193
A ++E + R K P+++ +DT E G +A+A + ++ P++
Sbjct: 50 ALAAAVLEAIEQRDKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVI 109
Query: 194 SIIIGEGGSGG--AMGIAAANFVYMLEHAIYSVISPEGAASI 233
++ G+ SG A G+ AN + L A+ V+ A +
Sbjct: 110 GLLYGKAMSGAFLAHGL-QANRLIALPGAMVHVMDLAAMARV 150
>gnl|CDD|132177 TIGR03133, malonate_beta, malonate decarboxylase, beta subunit.
Members of this protein family are the beta subunit of
malonate decarboxylase. Malonate decarboxylase may be a
soluble enzyme, or linked to membrane subunits and
active as a sodium pump. In the malonate decarboxylase
complex, the beta subunit appears to act as a
malonyl-CoA decarboxylase.
Length = 274
Score = 30.7 bits (70), Expect = 0.55
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 95 DPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMA-----DR 149
D + +G G+PV + QE + GS K V + +A
Sbjct: 46 DDGVVVGRGTIDGKPVVVAAQEG--------RFQGGSVGEVHGAKIVGALRLAIEDNRKG 97
Query: 150 FKIPVISFIDTAG-----AYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGG 204
V+ +DT G A G+ A A I RA + + VP++ +I G G G
Sbjct: 98 QPTAVVLLLDTGGVRLQEANAGLIAIAE-----IMRAI-LDARAAVPVIGVIGGRVGCFG 151
Query: 205 AMGIAAA--NFVYMLEHAIYSVISPE 228
MGIAA +++ M E + PE
Sbjct: 152 GMGIAAGLCSYLIMTEEGRLGLSGPE 177
>gnl|CDD|162747 TIGR02177, PorB_KorB, 2-oxoacid:acceptor oxidoreductase, beta
subunit, pyruvate/2-ketoisovalerate family. Several
related four-subunit enzymes may exist in the same
species. This model describes a subfamily of beta
subunits, representing mostly pyruvate and
2-ketoisovalerate specific enzymes.
Length = 287
Score = 29.7 bits (67), Expect = 0.92
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 175 GEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFV 214
G A+ AT +KL P L +I+ GG G GI +FV
Sbjct: 56 GRALPVATG--IKLANPHLKVIV-VGGDGDLYGIGGNHFV 92
>gnl|CDD|152379 pfam11944, DUF3461, Protein of unknown function (DUF3461). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 130 amino acids in length. This protein
has two conserved sequence motifs: KFK and HLE.
Length = 125
Score = 29.2 bits (66), Expect = 1.3
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 4 YLDFEEPISDLEAKIHELKKLSRE-----DINEDFSEEIRELEAMVCKTLSEIYSKL 55
Y + E +L I EL K+++ DI E E++R LE +V ++EI L
Sbjct: 66 YKNVSEISPNLLYVIDELDKITKHEHEEVDIKEKILEDLRHLEKVVNSKIAEIERDL 122
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 241
Score = 29.2 bits (65), Expect = 1.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 120 DTKSRIKHNFGSPRPEGYRKAV----RLMEMADRFKIPVISF 157
D R + G R EG+R+ RLM+ + + + IS
Sbjct: 17 DGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISL 58
>gnl|CDD|180762 PRK06936, PRK06936, type III secretion system ATPase; Provisional.
Length = 439
Score = 29.0 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 110 VAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADR 149
+A+IG E+G + + I+ + G EG RKAV ++ +DR
Sbjct: 193 LALIG-ERGREVREFIESDLG---EEGLRKAVLVVATSDR 228
>gnl|CDD|180869 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
Length = 301
Score = 28.7 bits (65), Expect = 1.9
Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 42/136 (30%)
Query: 95 DPAMQIGLARFHGQPVAIIGQEK----GSDTKSRIKHNFGSPRPE-GYRKAVRLMEMADR 149
D + +G G+PV + QE GS G E K +E+A
Sbjct: 55 DDGVVVGKGTLDGRPVVVAAQEGRFMGGS---------VG----EVHGAKLAGALELAAE 101
Query: 150 FK------IPVISFIDTAGAYPGVDAEARGQ----GE-AIA---RATEMCLKLQVPILSI 195
++ F +T G R Q G AIA RA + L+ VP++ +
Sbjct: 102 DNRNGIPTAVLLLF-ETGGV--------RLQEANAGLAAIAEIMRAI-VDLRAAVPVIGL 151
Query: 196 IIGEGGSGGAMGIAAA 211
I G G G MGIAAA
Sbjct: 152 IGGRVGCFGGMGIAAA 167
>gnl|CDD|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional.
Length = 485
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 10 PISDLEAKIHELKKLSREDINEDFSEEIREL 40
PI L ++ EL++ RE ++ + E+ L
Sbjct: 218 PIEALAKQVRELEEGEREQLDPNPPRELTSL 248
>gnl|CDD|163611 pfam10046, BLOC1_2, Biogenesis of lysosome-related organelles
complex-1 subunit 2. Members of this family of
proteins play a role in cellular proliferation, as well
as in the biogenesis of specialized organelles of the
endosomal-lysosomal system.
Length = 99
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 1 MRHYLDFEEPISDLEAKIHELKKLSRE-----DINEDFSEEIRELEA---MVCKTLSEIY 52
Y + L +I L + E + +++ LE + + E+
Sbjct: 34 ALKYKKMRQSAKGLRVEIEALNQKYEELKPYLQQIDAIEQQVTTLEEAVYELDEYSKELE 93
Query: 53 SKLT 56
SK+
Sbjct: 94 SKVK 97
>gnl|CDD|181185 PRK07979, PRK07979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 574
Score = 27.5 bits (61), Expect = 4.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 143 LMEMADRFKIPVISFIDTAGAYPGVDAEARG 173
L E+ ++ +PV+S + GA+P ++ G
Sbjct: 226 LKELVEKLNLPVVSSLMGLGAFPATHRQSLG 256
>gnl|CDD|150370 pfam09682, Holin_LLH, Phage holin protein (Holin_LLH). This entry
identifies a family of putative phage holin from a
number of phage and prophage regions of Gram-positive
bacteria. Like other holins, it is small (about 100
amino acids) with stretches of hydrophobic sequence and
is encoded adjacent to lytic enzymes.
Length = 108
Score = 27.3 bits (61), Expect = 4.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 172 RGQGEAIARATEMCLKLQVPILSIIIGEGGSG 203
+ GE A+ E+ K V + I EGG G
Sbjct: 35 KAGGEKAAKIEEILAKNAVNAVEQIAKEGGKG 66
>gnl|CDD|130336 TIGR01269, Tyr_3_monoox, tyrosine 3-monooxygenase, tetrameric.
This model describes tyrosine 3-monooxygenase, a member
of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tryptophan
5-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria.
Length = 457
Score = 27.6 bits (61), Expect = 4.7
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 58 WQKTQVSRHPNRPHYI---DYINSLFTHFISLAGDRLFGDDPAMQIGLA 103
+Q TQ RH + P + D I+ L H LA DR F + +IGLA
Sbjct: 268 FQCTQYIRHHSSPMHTPEPDCIHELLGHMPMLA-DRQFAQF-SQEIGLA 314
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 27.3 bits (61), Expect = 5.3
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 9 EPISDLEAKIHELKKLSREDINE--DFSEEIRELEAMVCKTLSEI 51
E + LEA+I +L++ E E + +EE+R+L + + E
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER 295
>gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed.
Length = 687
Score = 27.2 bits (61), Expect = 5.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 142 RLMEMADRFKIPVISFI---DTAGA-YPGVDAEARGQGEAIARATEMCLKLQVPI 192
+ ADR+ IP + FI D GA V + R + L LQ+PI
Sbjct: 116 TVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIE------ERFGKRPLPLQLPI 164
>gnl|CDD|184234 PRK13677, PRK13677, hypothetical protein; Provisional.
Length = 125
Score = 27.3 bits (61), Expect = 5.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 4 YLDFEEPISDLEAKIHELKKLSRE-----DINEDFSEEIRELEAMVCKTLSEIYSKL 55
Y + +E +L I EL ++ + D+ +++R LE++V +SEI + L
Sbjct: 66 YKEVQEISPNLRYVIDELDQICQRDREEVDLKRKILDDLRHLESVVANKISEIEADL 122
>gnl|CDD|181602 PRK08979, PRK08979, acetolactate synthase 3 catalytic subunit;
Validated.
Length = 572
Score = 27.1 bits (60), Expect = 5.9
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 142 RLMEMADRFKIPVISFIDTAGAYPGVDAEARG 173
+++++A++ +PV+S + GA+PG + G
Sbjct: 225 QILQLAEKLNLPVVSTLMGLGAFPGTHKNSLG 256
>gnl|CDD|162858 TIGR02439, catechol_proteo, catechol 1,2-dioxygenase,
proteobacterial. Members of this family known so far
are catechol 1,2-dioxygenases of the Proteobacteria.
They are distinct from catechol 1,2-dioxygenases and
chlorocatechol 1,2-dioxygenases of the Actinobacteria,
which are quite similar to each other and resolved by
separate models. This enzyme catalyzes intradiol
cleavage in which catechol + O2 becomes
cis,cis-muconate. Catechol is an intermediate in the
catabolism of many different aromatic compounds, as is
the alternative intermediate protocatechuate. In
Acinetobacter lwoffii, two isozymes are present with
abilities, differing somewhat, to act on catechol
analogs 3-methylcatechol, 4-methylcatechol,
4-methoxycatechol, and 4-chlorocatechol.
Length = 285
Score = 27.0 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 62 QVSRHPNRPHYIDYINSLFTHF-----ISLAGDRLFGDDPA 97
+ RH NRP ++ + S H I++ GD DD A
Sbjct: 207 LLGRHGNRPAHVHFFVSAPGHRKLTTQINIEGDPYLWDDFA 247
>gnl|CDD|131364 TIGR02311, HpaI, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase.
This model represents the aldolase which performs the
final step unique to the 4-hydroxyphenylacetic acid
catabolism pathway in which
2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into
pyruvate and succinate-semialdehyde. The gene for enzyme
is generally found adjacent to other genes for this
pathway organized into an operon.
Length = 249
Score = 27.0 bits (60), Expect = 6.3
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 34/106 (32%)
Query: 172 RGQGEAIARAT--------------EMCLKLQV----------PILS------IIIGEGG 201
RG G A+ARA+ E+C+ LQV I + + IG
Sbjct: 114 RGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPAD 173
Query: 202 SGGAMGIA----AANFVYMLEHAIYSVISPEGAASILWRDSSRAAQ 243
+MG ++ AI + + AA IL D A Q
Sbjct: 174 LAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILTADPKLARQ 219
>gnl|CDD|178319 PLN02717, PLN02717, uridine nucleosidase.
Length = 316
Score = 26.9 bits (60), Expect = 6.4
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 12/63 (19%)
Query: 93 GDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGS-PRPEGYRKAVRLMEMADRFK 151
G D AM I +A V +IG + FG+ R A+ L+EMA R
Sbjct: 10 GIDDAMAILMA-LRSPEVEVIG----------LTTIFGNVTTKLATRNALHLLEMAGRPD 58
Query: 152 IPV 154
+PV
Sbjct: 59 VPV 61
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 26.9 bits (60), Expect = 7.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 7 FEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLT 56
++ S LE ELK L+ + E+ EEI+EL+ K + EI KL
Sbjct: 91 LKQDCSTLEI---ELKSLTSDLTTEELQEEIQELK----KEVREIEEKLE 133
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.135 0.389
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,398,856
Number of extensions: 362149
Number of successful extensions: 997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 984
Number of HSP's successfully gapped: 54
Length of query: 317
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 224
Effective length of database: 3,984,929
Effective search space: 892624096
Effective search space used: 892624096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)