RPSBLAST alignment of GI: 254780588 and protein with PDBid: 1x0u

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Length = 522

 Score =  122 bits (306), Expect = 1e-28
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%)

Query: 63  VSRHPNRPHYIDYINSLFT---HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGS 119
           V     +P+ +  I         F+ +           + +G AR  G  V I+      
Sbjct: 281 VPNDAAKPYNMREIIYKIVDNGEFLEVH----KHWAQNIIVGFARIAGNVVGIVAN---- 332

Query: 120 DTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIA 179
                 +   GS   +   KA R +   D F IP+IS +DT G  PG D E +G     A
Sbjct: 333 ----NPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGA 388

Query: 180 RATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILW 235
           +      +  VP +++I+ +   G  + ++     A+ VY    A  +V  PEGA  IL+
Sbjct: 389 KMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILY 448

Query: 236 R-DSSRAAQAAIAMKIIATDLQDLS----------IIDGIIP 266
           R +  +A+     +K    + + L           ++D +I 
Sbjct: 449 RKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE 490