RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (317 letters) >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha chain; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Length = 339 Score = 303 bits (776), Expect = 5e-83 Identities = 153/317 (48%), Positives = 213/317 (67%), Gaps = 2/317 (0%) Query: 1 MRHYLDFEEPISDLEAKIHELKKLSRED--INEDFSEEIRELEAMVCKTLSEIYSKLTPW 58 ++LDFE+PI++LEAKI L SR+D ++ + EE+ L + +I++ L W Sbjct: 22 SLNFLDFEQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAW 81 Query: 59 QKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKG 118 Q Q++RHP RP+ +DY+ F F LAGDR + DD A+ G+AR G+PV IIG +KG Sbjct: 82 QIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKG 141 Query: 119 SDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAI 178 +TK +I+ NFG P PEGYRKA+RLM+MA+RFK+P+I+FIDT GAYPGV AE RGQ EAI Sbjct: 142 RETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGAYPGVGAEERGQSEAI 201 Query: 179 ARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDS 238 AR +L VP++ +IGEGGSGGA+ I + V ML+++ YSVISPEG ASILW+ + Sbjct: 202 ARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQYSTYSVISPEGCASILWKSA 261 Query: 239 SRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYS 298 +A AA AM II L++L +ID IIPEP+GGAHRNP +S+ + L++ S Sbjct: 262 DKAPLAAEAMGIIRPRLKELKLIDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLS 321 Query: 299 ETEIREHRRQKYLNIGR 315 +++ R Q+ ++ G Sbjct: 322 TEDLKNRRYQRLMSYGY 338 >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Length = 327 Score = 269 bits (688), Expect = 7e-73 Identities = 148/315 (46%), Positives = 202/315 (64%), Gaps = 1/315 (0%) Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60 LDFE+P+ ++ KI LK+ ++ + D EEI LEA + + +IY+ L PW + Sbjct: 11 RGSMLDFEKPLFEIRNKIESLKESQDKN-DVDLQEEIDMLEASLERETKKIYTNLKPWDR 69 Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120 Q++R RP +DYI +F F+ L GDR F DDPAM G+ +G+ V +IGQ++G D Sbjct: 70 VQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKD 129 Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 TK I NFG PEGYRKA+RLM+ A++F P+ +FIDT GAYPG AE RGQ E+IA Sbjct: 130 TKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIAT 189 Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240 L+VP+++I+IGEGGSGGA+GI AN V MLE++ YSVISPEGAA++LW+DS+ Sbjct: 190 NLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNL 249 Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300 A AA MKI A D++ L IID +I EP+GGAH++ Q ++ L + S Sbjct: 250 AKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLSRD 309 Query: 301 EIREHRRQKYLNIGR 315 EI R +K+ NIG Sbjct: 310 EIANDRFEKFRNIGS 324 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Length = 530 Score = 152 bits (384), Expect = 1e-37 Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 26/235 (11%) Query: 57 PWQKTQVSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115 T V N+P+ + I + LF P + G R G+PV I+ Sbjct: 282 AELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFA--PNILTGFGRVEGRPVGIVAN 339 Query: 116 EKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQG 175 + G KA R + D F +PV++F+D G PGVD E G Sbjct: 340 QP--------MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGII 391 Query: 176 EAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAA 231 A+ + VP++++I + G + + + A+ A +V+ +GA Sbjct: 392 RRGAKLIFAYAEATVPLITVITRKAFGGAYVVMGSKHLGADLNLAWPTAQIAVMGAQGAV 451 Query: 232 SILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQT 279 +IL R + A AT + + + + P A R P+ T Sbjct: 452 NILHRRTIADAGDDAE----ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDT 502 Score = 48.1 bits (114), Expect = 3e-06 Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%) Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153 + G G+PVA+ Q+ G G+ +K V++M+ A + P Sbjct: 86 GVVTGYGTVDGRPVAVFSQDFTVFG-----------GALGEVYGQKIVKVMDFALKTGCP 134 Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213 V+ D+ GA + G I R +P +S+++G G A +F Sbjct: 135 VVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDF 193 Query: 214 VYMLEH-AIYSVISPE 228 M++ + + P+ Sbjct: 194 TVMVDQTSHMFITGPD 209 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Length = 523 Score = 142 bits (360), Expect = 7e-35 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%) Query: 66 HPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRI 125 + Y + G + AR +G+ V I+ + Sbjct: 284 IDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPS------- 336 Query: 126 KHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMC 185 G KA + D F IP++ +D G PGV E G A+ Sbjct: 337 -VMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAY 395 Query: 186 LKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWRDSSRA 241 + VP +++++ + G + + A+ VY A +V+ EGAA++++R +A Sbjct: 396 SEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKA 455 Query: 242 AQAAIAMKIIATDLQDLSI-----------IDGIIPEPIGGAHRNPAQTISSVGEIISQF 290 A AM+ + + +D +I PA T + + + Sbjct: 456 ADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVID---------PADTRRKIASALEMY 506 Query: 291 LS 292 + Sbjct: 507 AT 508 Score = 48.2 bits (114), Expect = 3e-06 Identities = 35/160 (21%), Positives = 52/160 (32%), Gaps = 23/160 (14%) Query: 80 FTHFISLAG--DRLFGDDP------AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHN 128 F + LFG D + G G+PV Q+ G Sbjct: 59 FDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMG---------- 108 Query: 129 FGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKL 188 GS K V ME A P + F D+ GA ++ + A Sbjct: 109 -GSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSG- 166 Query: 189 QVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPE 228 VP ++II G G + A +F+ M + A + P+ Sbjct: 167 VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQ 206 >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans och 114} Length = 531 Score = 140 bits (353), Expect = 5e-34 Identities = 38/199 (19%), Positives = 70/199 (35%), Gaps = 28/199 (14%) Query: 92 FGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFK 151 + G R G+ V ++ + G + RKA R + D F+ Sbjct: 322 EEFAKNIITGFIRLEGRTVGVVANQP--------LVLAGCLDIDSSRKAARFVRFCDAFE 373 Query: 152 IPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAA- 210 IP+++ ID G PG E G + A+ + VP++++I + G + +++ Sbjct: 374 IPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVVMSSK 433 Query: 211 ---ANFVYMLEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQD-------LSI 260 A+F Y A +V+ +GA I+ R + + Sbjct: 434 HLRADFNYAWPTAEVAVMGAKGATEIIHRGDLGDPEKIAQHTADYEERFANPFVASERGF 493 Query: 261 IDGIIPEPIGGAHRNPAQT 279 +D +I P T Sbjct: 494 VDEVIQ---------PRST 503 Score = 51.6 bits (123), Expect = 2e-07 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 15/134 (11%) Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153 + G +G+ V + Q+ G GS +K ++M+MA + P Sbjct: 94 GVVTGWGTINGRVVYVFSQDFTVLG-----------GSVSETHSKKICKIMDMAMQNGAP 142 Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213 VI D+ GA ++ + + M + VP +S+I+G G A +F Sbjct: 143 VIGINDSGGARIQEGVDSLAGYGEVFQRNIMASGV-VPQISMIMGPCAGGAVYSPAMTDF 201 Query: 214 VYMLEHAIYSVISP 227 ++M++ + Y ++ Sbjct: 202 IFMVKDSSYMFVTG 215 >1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} SCOP: c.14.1.4 c.14.1.4 PDB: 1xnv_A* 1xo6_A 1xnw_A Length = 530 Score = 131 bits (331), Expect = 1e-31 Identities = 53/248 (21%), Positives = 88/248 (35%), Gaps = 26/248 (10%) Query: 57 PWQKTQVSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115 T V N+P+ + I + LF P + G R G+PV I+ Sbjct: 282 AELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFA--PNILTGFGRVEGRPVGIVAN 339 Query: 116 EKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQG 175 + G KA R + D F +PV++F+D G PGVD E G Sbjct: 340 QP--------MQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGII 391 Query: 176 EAIARATEMCLKLQVPILSIIIGEGGSGGAMGIA----AANFVYMLEHAIYSVISPEGAA 231 A+ + VP++++I + G + A+ A +V+ +GA Sbjct: 392 RRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAV 451 Query: 232 SILWRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQTISSVG 284 +IL R + A AT + + + + P A R P+ T + Sbjct: 452 NILHRRTIADAGDDAE----ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 507 Query: 285 EIISQFLS 292 + Q + Sbjct: 508 RGLRQLRT 515 Score = 36.7 bits (84), Expect = 0.007 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 15/126 (11%) Query: 97 AMQIGLARFHGQPVAIIGQE---KGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153 + G G+PVA+ Q+ G G+ +K V++M+ A + P Sbjct: 86 GVVTGYGTVDGRPVAVFSQDFTVFG-----------GALGEVYGQKIVKVMDFALKTGCP 134 Query: 154 VISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213 V+ D+ GA + G I R +P +S+++G G A +F Sbjct: 135 VVGINDSGGARIQEGVASLGAYGEIFRRNTHASG-VIPQISLVVGPCAGGAVYSPAITDF 193 Query: 214 VYMLEH 219 M++ Sbjct: 194 TVMVDQ 199 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Length = 548 Score = 127 bits (321), Expect = 2e-30 Identities = 52/264 (19%), Positives = 90/264 (34%), Gaps = 34/264 (12%) Query: 63 VSRHPNRP--HYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120 + PN+P + L F+ + + +G R G+PV I+ + Sbjct: 304 IPDSPNQPYDMHEVITRLLDDEFLEIQAGY----AQNIVVGFGRIDGRPVGIVANQP--- 356 Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 H G KA R + D F IP++ +D G PG D E G A+ Sbjct: 357 -----THFAGCLDINASEKAARFVRTCDCFNIPIVMLVDVPGFLPGTDQEYNGIIRRGAK 411 Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWR 236 + VP +++I + G + + + A +V+ GA ++R Sbjct: 412 LLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVMGASGAVGFVYR 471 Query: 237 DSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHR-------NPAQTISSVGEIISQ 289 A AA I L+ + + P A R P+ T +G + Sbjct: 472 Q-QLAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRL 530 Query: 290 FLSETSTYSETEIREHRRQKYLNI 313 E +I + +K+ N+ Sbjct: 531 L--------ERKIAQLPPKKHGNV 546 Score = 41.3 bits (96), Expect = 3e-04 Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 9/123 (7%) Query: 97 AMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS 156 + G G+ V I Q+ GS K V++ E+A + P+I Sbjct: 97 GVVTGYGTIDGRDVCIFSQD--------ATVFGGSLGEVYGEKIVKVQELAIKTGRPLIG 148 Query: 157 FIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM 216 D AGA + G I R + +P +S+I+G G A +FV M Sbjct: 149 INDGAGARIQEGVVSLGLYSRIFRNNIL-ASGVIPQISLIMGAAAGGHVYSPALTDFVIM 207 Query: 217 LEH 219 ++ Sbjct: 208 VDQ 210 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Length = 527 Score = 124 bits (311), Expect = 3e-29 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 26/220 (11%) Query: 63 VSRHPNRPHYI-DYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDT 121 + +PN+ + + D I + H F + IG AR G+ V I+ + Sbjct: 286 LPDNPNKGYDVRDVIKRVVDHGEFFEVQPYFA--KNIVIGFARIQGKTVGIVANQP---- 339 Query: 122 KSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARA 181 G + KA R + D F IP+++F+DT G PGV E G A+ Sbjct: 340 ----SVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKL 395 Query: 182 TEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILWRD 237 + VP +++I+ + G + + + A+ V A +V+ PEGAA+I+++ Sbjct: 396 LYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKR 455 Query: 238 SSRAAQAAIAMKIIATDLQDLSI-----------IDGIIP 266 A+ + + +D +I Sbjct: 456 EIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVID 495 Score = 38.6 bits (89), Expect = 0.002 Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 97 AMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS 156 + G+ +G+ VA+ Q+ GS +K V+L+++A + IPVI Sbjct: 87 GVITGVGEINGRKVAVFSQD--------FTVMGGSLGEMHAKKIVKLLDLALKMGIPVIG 138 Query: 157 FIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYM 216 D+ GA +A I + + VP +++I G G A +F+ M Sbjct: 139 INDSGGARIQEGVDALAGYGEIFLRNTLASGV-VPQITVIAGPCAGGAVYSPALTDFIVM 197 Query: 217 LEH 219 ++ Sbjct: 198 VDQ 200 >1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} Length = 522 Score = 122 bits (306), Expect = 1e-28 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 30/222 (13%) Query: 63 VSRHPNRPHYIDYINSLFT---HFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGS 119 V +P+ + I F+ + + +G AR G V I+ Sbjct: 281 VPNDAAKPYNMREIIYKIVDNGEFLEVH----KHWAQNIIVGFARIAGNVVGIVAN---- 332 Query: 120 DTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIA 179 + GS + KA R + D F IP+IS +DT G PG D E +G A Sbjct: 333 ----NPEEFGGSIDIDAADKAARFIRFCDAFNIPLISLVDTPGYVPGTDQEYKGIIRHGA 388 Query: 180 RATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYMLEHAIYSVISPEGAASILW 235 + + VP +++I+ + G + ++ A+ VY A +V PEGA IL+ Sbjct: 389 KMLYAFAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILY 448 Query: 236 R-DSSRAAQAAIAMKIIATDLQDLS----------IIDGIIP 266 R + +A+ +K + + L ++D +I Sbjct: 449 RKEIQQASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIE 490 >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* Length = 588 Score = 118 bits (296), Expect = 2e-27 Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 13/208 (6%) Query: 63 VSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKG---- 118 + + RP+ I + + + + G P M GLA+ +G V +I +G Sbjct: 316 IPMNQKRPYDIYEVIARLFDNSEFSEYK-KGYGPEMVTGLAKVNGLLVGVIANVQGLLMN 374 Query: 119 -SDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177 + K G +G K + + R +IP+I DT G G +AE Sbjct: 375 YPEYKQNSVGIGGKLYRQGLIKMNEFVTLCARDRIPLIWLQDTTGIDVGDEAEKAELLGL 434 Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAA----ANFVYML--EHAIYSVISPEGAA 231 ++P L I I + + + V+ + Y V+ E AA Sbjct: 435 GQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETAA 494 Query: 232 SILWR-DSSRAAQAAIAMKIIATDLQDL 258 + ++ +A +A ++ I + D+ Sbjct: 495 NAMYSRKLVKAKKAGEDLQPIIGKMNDM 522 Score = 65.5 bits (159), Expect = 2e-11 Identities = 28/153 (18%), Positives = 52/153 (33%), Gaps = 14/153 (9%) Query: 80 FTHFISLAG--DRLFGDDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGY 137 + SL + FG + GL R G+ V I+ + K G+ P Sbjct: 77 WCPLNSLFNPENNKFGTT-NIVNGLGRVDGKWVYIVASD--------NKKMAGAWVPGQA 127 Query: 138 RKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA---RGQGEAIARATEMCLKLQVPILS 194 +R + A +P+I ++ +G + R G +L +P++ Sbjct: 128 ENLIRCSDAAKMMHLPLIYLLNCSGVEFPNQDKVYPNRRGGGTPFFRNSELNQLGIPVIV 187 Query: 195 IIIGEGGSGGAMGIAAANFVYMLEHAIYSVISP 227 I G +GG + + + A +V Sbjct: 188 GIYGTNPAGGGYHSISPTILIAHQDANMAVGGA 220 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Length = 587 Score = 117 bits (294), Expect = 3e-27 Identities = 29/203 (14%), Positives = 58/203 (28%), Gaps = 16/203 (7%) Query: 57 PWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE 116 + + + + P M GLA+ +G V ++ Sbjct: 310 YSMVPLNDKRAYDIYNVIARLFDNSELHEYKKGY----GPEMVTGLAKVNGLLVGVVANV 365 Query: 117 KGSDTK------SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAE 170 +G + G +G K + + R ++P++ DT G G DAE Sbjct: 366 QGLLMNYPEYKAAGSVGIGGKLYRQGLVKMNEFVTLCARDRLPIVWIQDTTGIDVGNDAE 425 Query: 171 ARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAA------NFVYMLEHAIYSV 224 +P I + +G + + F +V Sbjct: 426 KAELLGLGQSLIYSIQTSHIPQFEITLRKGTAAAHYVLGGPQGNDTNAFSIGTAATEIAV 485 Query: 225 ISPEGAASILWRDSSRAAQAAIA 247 ++ E AA+ ++ + A Sbjct: 486 MNGETAATAMYSRRLAKDRKAGK 508 Score = 81.3 bits (200), Expect = 2e-16 Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 26/230 (11%) Query: 6 DFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYS-----KLTPWQK 60 + + + + + + + E + + EEI +L + +LT Q+ Sbjct: 8 RYFQNMPQVGKPLKKADAANEEQL-KKIEEEIHQLIKEAQEAGKADADVNKRGELTALQR 66 Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120 + P ++ +LF G++ A+ GL R +G+ ++ + Sbjct: 67 IEKLVEPGSWRPLN---TLFNP----QGNKNGSV--AIVKGLGRVNGKWCVVVASD---- 113 Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEA---RGQGEA 177 K G+ P +R + A +P++ ++ +G + R G Sbjct: 114 ----NKKLAGAWVPGQAECLLRASDTAKTLHVPLVYVLNCSGVKFDEQEKVYPNRRGGGT 169 Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISP 227 +L +P++ I G +GG + + E A +V Sbjct: 170 PFFRNAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGA 219 >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, CT, tepraloxydim, ATP-binding, biotin, cytoplasm, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 1od2_A* 1od4_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A Length = 758 Score = 114 bits (287), Expect = 2e-26 Identities = 32/255 (12%), Positives = 70/255 (27%), Gaps = 25/255 (9%) Query: 12 SDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPH 71 DL ++ +S + I E + + + + + + Sbjct: 320 DDLAGVEKIVEWMSYVPAKRNMPVPILETKDTWDRPVDFTPTNDETYDVRWMIEGRETES 379 Query: 72 YIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE--------------K 117 +Y F + +G AR G P+ +IG E Sbjct: 380 GFEYGLFDKGSFFETLSGW----AKGVVVGRARLGGIPLGVIGVETRTVENLIPADPANP 435 Query: 118 GSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEA 177 S + ++ A + + + ++P++ + G G + Sbjct: 436 NSAETLIQEPGQVWHPNSAFKTAQAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKY 495 Query: 178 IARATEMCLKLQVPILSIIIGEGGSGGAMGIAAAN-------FVYMLEHAIYSVISPEGA 230 + + + + PI+ I G G + +Y +A V+ P+G Sbjct: 496 GSFIVDALVDYKQPIIIYIPPTGELRGGSWVVVDPTINADQMEMYADVNARAGVLEPQGM 555 Query: 231 ASILWRDSSRAAQAA 245 I +R Sbjct: 556 VGIKFRREKLLDTMN 570 Score = 43.2 bits (101), Expect = 7e-05 Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%) Query: 107 GQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPG 166 G+ ++ + I GS P+ ++ E A + IP I +GA G Sbjct: 104 GRQFVVVAND--------ITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGARIG 155 Query: 167 VDAEARGQG 175 + E Sbjct: 156 MAEEIVPLF 164 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Length = 760 Score = 111 bits (279), Expect = 2e-25 Identities = 36/223 (16%), Positives = 65/223 (29%), Gaps = 24/223 (10%) Query: 57 PWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQE 116 P HP + + F H + + G AR G PV +I E Sbjct: 354 PRWMLAGRPHPTLKG--TWQSGFFDHGSFKEIMAPWA--QTVVTGRARLGGIPVGVIAVE 409 Query: 117 KGSDTK-------------SRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGA 163 + I+ P+ K + ++ +R K+P++ F + G Sbjct: 410 TRTVEVAVPADPANLDSEAKIIQQAGQVWFPDSAYKTAQAIKDFNREKLPLMIFANWRGF 469 Query: 164 YPGVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAAN-------FVYM 216 G+ + A + + + PIL I G + +Y Sbjct: 470 SGGMKDMYDQVLKFGAYIVDGLRQYKQPILIYIPPYAELRGGSWVVIDATINPLCIEMYA 529 Query: 217 LEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQDLS 259 + + V+ PEG I +R ++ L Sbjct: 530 DKESRGGVLEPEGTVEIKFRKKDLIKSMRRIDPAYKKLMEQLG 572 Score = 42.8 bits (100), Expect = 1e-04 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 107 GQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPG 166 G+ V +IG + I GS P +R EMA IP I +GA G Sbjct: 94 GRDVIVIGND--------ITFRIGSFGPGEDLLYLRASEMARAEGIPKIYVAANSGARIG 145 Query: 167 VDAEARGQG 175 + E + Sbjct: 146 MAEEIKHMF 154 Score = 27.0 bits (59), Expect = 5.2 Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 4/112 (3%) Query: 175 GEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASIL 234 RA+EM +P + + + GA A +M A P L Sbjct: 116 DLLYLRASEMARAEGIPKIYVA----ANSGARIGMAEEIKHMFHVAWVDPEDPHKGFKYL 171 Query: 235 WRDSSRAAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEI 286 + + + + +++ +I + IG + + G I Sbjct: 172 YLTPQDYTRISSLNSVHCKHIEEGGESRYMITDIIGKDDGLGVENLRGSGMI 223 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 4e-05 Identities = 41/189 (21%), Positives = 65/189 (34%), Gaps = 62/189 (32%) Query: 60 KTQVSRHPNRPHYIDYINSLFTHF-------ISLA-GDRLF---GDDPAMQI-GLA---R 104 + QV + ++ NS H ISL G + G P + GL R Sbjct: 346 QEQVQDY------VNKTNS---HLPAGKQVEISLVNGAKNLVVSG--PPQSLYGLNLTLR 394 Query: 105 FHGQPVAIIGQEK--GSDTKSRIKHNF---GSPRPEGY-RKAV-RLME---------MAD 148 P + + Q + S+ K + + F SP A + + A Sbjct: 395 KAKAP-SGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453 Query: 149 RFKIPVISFIDTAGAYPGVDAEARGQGEAI-ARATEMCLKLQV--------PILSIIIGE 199 +IPV + DT + G D R +I R + ++L V I+ + Sbjct: 454 DIQIPV--Y-DT---FDGSDL--RVLSGSISERIVDCIIRLPVKWETTTQFKATHIL--D 503 Query: 200 GGSGGAMGI 208 G GGA G+ Sbjct: 504 FGPGGASGL 512 Score = 40.7 bits (95), Expect = 4e-04 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 88/215 (40%) Query: 30 NEDFSEEIREL--------------EAMVCKTLSE-------IYSK---LTPWQKTQVSR 65 +D+ EE+R+L A L ++++ + W + + Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225 Query: 66 HPNRPHYIDYINS------L-----FTHFISLAGDRLFGDDPA-MQIGLARF-----HGQ 108 P++ DY+ S L H++ A +L G P ++ + H Q Sbjct: 226 -PDK----DYLLSIPISCPLIGVIQLAHYVVTA--KLLGFTPGELR---SYLKGATGHSQ 275 Query: 109 PV---AIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVIS---FIDTAG 162 + I + +D+ + RKA+ ++ F I V + +T+ Sbjct: 276 GLVTAVAIAE---TDSWESFFVSV--------RKAITVL-----FFIGVRCYEAYPNTSL 319 Query: 163 AYPGV--DAEARGQGEAIARATEMCLKLQVPILSI 195 P + D+ +G + P+LSI Sbjct: 320 P-PSILEDSLENNEG----VPS--------PMLSI 341 Score = 33.0 bits (75), Expect = 0.087 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 35/101 (34%) Query: 226 SPEGAASILWRDSSRAAQAAIAMKIIA------------TDLQDL-SIIDGIIPEPIGGA 272 + + S L+R A A +++A +L+DL ++ + Sbjct: 137 FDKKSNSALFR----AVGEGNA-QLVAIFGGQGNTDDYFEELRDLYQTYHVLV-GDL--- 187 Query: 273 HRNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNI 313 I E +S+ + T E + LNI Sbjct: 188 -------IKFSAETLSELIRTTLD------AEKVFTQGLNI 215 Score = 30.3 bits (68), Expect = 0.66 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 35/100 (35%) Query: 217 LEHAIYSVISPEGAASILWRDSSRAAQAAIAMKIIATDLQD--LSIIDGIIPEPIGG-AH 273 LEH + V P + A+Q LQ+ I+ PEP G A Sbjct: 16 LEHVL-LV--PTA----SF---FIASQ-----------LQEQFNKIL----PEPTEGFAA 50 Query: 274 RNPAQTISSVGEIISQFLSETSTYSETEIREHRRQKYLNI 313 + ++ E++ +FL Y + + + ++ + Sbjct: 51 DDE---PTTPAELVGKFLG----YVSSLVEPSKVGQFDQV 83 Score = 29.1 bits (65), Expect = 1.3 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 33/122 (27%) Query: 10 PISDLEAKIHE--LKKLSREDINEDFSEEIRELEAM-----VCKT-----LSEIYSKLTP 57 P++ + H L + + IN+D + A V T L + ++ Sbjct: 422 PVA---SPFHSHLLVP-ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE 477 Query: 58 WQKTQVSRHPNRPHYIDYINSL-F--THFISLAGDRLFGDDPAMQIG--LAR-FHGQPVA 111 + R P + + + F TH + D FG A +G R G V Sbjct: 478 RIVDCIIRLP-----VKWETTTQFKATHIL----D--FGPGGASGLGVLTHRNKDGTGVR 526 Query: 112 II 113 +I Sbjct: 527 VI 528 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 35.2 bits (80), Expect = 0.021 Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 27/141 (19%) Query: 2 RHYLDFEEPISD-----LEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLT 56 R + E I D LEA E +++ ED NE E RE+ +E S+L Sbjct: 1251 RQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLERTREIH-------NEAESQLR 1303 Query: 57 PWQKTQVSRHPNR-PHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQ 115 Q+ + R P +L T+ +++ DD +G+A FHG + Sbjct: 1304 AAQQQWGNDFYKRDPRIAPLRGALATYGLTI-------DD----LGVASFHGTSTKANDK 1352 Query: 116 EKGSDTKSRIKHNFGSPRPEG 136 + + +KH G R EG Sbjct: 1353 NESATINEMMKH-LG--RSEG 1370 Score = 29.8 bits (66), Expect = 0.92 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 170 EARGQGEAIARATEMCLKLQVPILSII 196 EA+G G I ++ LK+ VPI I+ Sbjct: 1179 EAQGAGIQIIMQADLALKMGVPIYGIV 1205 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 34.6 bits (78), Expect = 0.031 Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 5/18 (27%) Query: 85 SLAGDRLFGDD--PAMQI 100 SL +L+ DD PA+ I Sbjct: 28 SL---KLYADDSAPALAI 42 Score = 29.2 bits (64), Expect = 1.1 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 6/24 (25%) Query: 231 ASI-LWRDSSRAAQAAIAMKIIAT 253 AS+ L+ D S A A+ I AT Sbjct: 27 ASLKLYADDS-----APALAIKAT 45 >2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Length = 63 Score = 31.8 bits (72), Expect = 0.20 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 5/50 (10%) Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSE 50 ++ YL+ ++ ++ EAK+ +L K +N S+E+R+L+ + K +E Sbjct: 12 LQEYLELKKALATSEAKVQQLMK-----VNSSLSDELRKLQREIHKLQAE 56 >3nrz_C Xanthine dehydrogenase/oxidase; xanthine oxidase, hypoxanthine, substrate orientation, hydro oxidoreductase; HET: FAD MTE HPA; 1.80A {Bos taurus} PDB: 3eub_C* 3b9j_C* 1fiq_C* 3etr_C* 3ns1_C* Length = 756 Score = 31.6 bits (71), Expect = 0.23 Identities = 4/23 (17%), Positives = 7/23 (30%) Query: 91 LFGDDPAMQIGLARFHGQPVAII 113 LF D+ G + + Sbjct: 78 LFNDETVFAKDTVTCVGHIIGAV 100 >3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Score = 30.8 bits (69), Expect = 0.43 Identities = 7/94 (7%), Positives = 31/94 (32%), Gaps = 9/94 (9%) Query: 18 IHELKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK-------TQVSRHPN 68 + + + + ++ ++ + E ++ + ++ K + + +HP Sbjct: 2 MQDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIQKIPGFWANTLRKHPA 61 Query: 69 RPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGL 102 + + H + L ++ + +I Sbjct: 62 LSDIVPEDIDILNHLVKLDLKDNMDNNGSYKITF 95 >3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, chaperone; 2.30A {Plasmodium falciparum 3D7} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Score = 29.6 bits (66), Expect = 0.93 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 7 FEEPISDLEAKIHE----LKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSK 54 +++ ++DL + E LK +E D F E+ L IY K Sbjct: 40 YDDKMTDLTEEQKETLKKLKLYQKEYYDYESKFEYELFLLRQKYHDLYGPIYDK 93 >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 Score = 29.2 bits (65), Expect = 1.2 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 7/87 (8%) Query: 135 EGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVPILS 194 EG + ++A + K P I FID A +A G+ + T M L L+ Sbjct: 94 EGASLVKDIFKLA-KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQL------LA 146 Query: 195 IIIGEGGSGGAMGIAAANFVYMLEHAI 221 + G G I A N +L+ AI Sbjct: 147 EMDGFDARGDVKIIGATNRPDILDPAI 173 >2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B* Length = 777 Score = 29.1 bits (64), Expect = 1.5 Identities = 6/22 (27%), Positives = 11/22 (50%) Query: 92 FGDDPAMQIGLARFHGQPVAII 113 +P + G F GQP+ ++ Sbjct: 80 PSPEPVLATGEVHFVGQPIFLV 101 >3kx6_A Fructose-bisphosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, glycolysis, lyase, structural genomics; HET: CIT; 2.10A {Babesia bovis} Length = 379 Score = 28.7 bits (64), Expect = 1.7 Identities = 8/49 (16%), Positives = 17/49 (34%) Query: 143 LMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQVP 191 + D + + + GVD + + + + T L+ VP Sbjct: 233 FKALNDHKVLLEGALLKPNMVTQGVDCKDKPAPQTVGFLTSRALRRTVP 281 >2nz6_A Receptor-type tyrosine-protein phosphatase ETA; hydrolase receptor type tyrosine phosphatase J, PTPRJ, glycoprotein, structural genomics; 2.30A {Homo sapiens} PDB: 2cfv_A Length = 316 Score = 28.6 bits (63), Expect = 1.8 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 15/84 (17%) Query: 10 PISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEI-----------YSKLTPW 58 + + EA + + D N F+EE +L+ + Y+ + P+ Sbjct: 27 RVENFEAYFKKQQA----DSNCGFAEEYEDLKLVGISQPKYAAELAENRGKNRYNNVLPY 82 Query: 59 QKTQVSRHPNRPHYIDYINSLFTH 82 ++V DYIN+ + Sbjct: 83 DISRVKLSVQTHSTDDYINANYMP 106 >2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} SCOP: a.118.1.20 Length = 392 Score = 28.2 bits (63), Expect = 2.2 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 12/79 (15%) Query: 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93 SE+ RE + + TL IY K R + IN++F FI + G Sbjct: 185 SEDPRERD-FLKTTLHRIYGKFLG----------LRAYIRKQINNIFYRFIYE-TEHHNG 232 Query: 94 DDPAMQIGLARFHGQPVAI 112 ++I + +G + + Sbjct: 233 IAELLEILGSIINGFALPL 251 >1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A* Length = 1332 Score = 28.5 bits (63), Expect = 2.3 Identities = 4/23 (17%), Positives = 7/23 (30%) Query: 91 LFGDDPAMQIGLARFHGQPVAII 113 LF D+ G + + Sbjct: 648 LFNDETVFAKDTVTCVGHIIGAV 670 >2npp_B PP2A, B, serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; protein-protein complexl, heat repeat; HET: ADD; 3.30A {Homo sapiens} SCOP: a.118.1.20 Length = 449 Score = 28.3 bits (63), Expect = 2.3 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 21/88 (23%) Query: 22 KKLSREDINEDF---------SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHY 72 ++++ I++ F SE+ RE + + TL IY K R + Sbjct: 152 PNIAKKYIDQKFVLQLLELFDSEDPRERD-FLKTTLHRIYGKFLG----------LRAYI 200 Query: 73 IDYINSLFTHFISLAGDRLFGDDPAMQI 100 IN++F FI + G ++I Sbjct: 201 RKQINNIFYRFIYE-TEHHNGIAELLEI 227 >3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 86 Score = 28.1 bits (63), Expect = 2.5 Identities = 7/24 (29%), Positives = 13/24 (54%) Query: 17 KIHELKKLSREDINEDFSEEIREL 40 K +EL+ S+E + + +EL Sbjct: 4 KAYELRTKSKEQLASQLVDLKKEL 27 >2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221 Score = 28.2 bits (62), Expect = 2.8 Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 4/31 (12%) Query: 9 EPISDLEAKIHELKKLSREDINEDFSEEIRE 39 E ++ A++ + ED ++ I+ Sbjct: 12 EEAAEQRAEVDRML---SED-PWRAAKMIKG 38 >1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A* Length = 769 Score = 28.1 bits (61), Expect = 2.9 Identities = 5/23 (21%), Positives = 11/23 (47%) Query: 91 LFGDDPAMQIGLARFHGQPVAII 113 + ++ + R+ G PVA + Sbjct: 86 IAENEYPLARDKVRYRGDPVAAV 108 >2aex_A Coproporphyrinogen III oxidase, mitochondrial; FLAT beta-sheet sandwiched by helices, oxidoreductase; HET: CIT; 1.58A {Homo sapiens} Length = 346 Score = 27.7 bits (61), Expect = 3.7 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 9 EPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSK----LTPWQK 60 P++DL EL++ D+ I E +A VC+ L+++ + W++ Sbjct: 25 PPVTDLG----ELRR-RPGDMKTKMELLILETQAQVCQALAQVDGGANFSVDRWER 75 >2nlk_A Protein tyrosine phosphatase, receptor type, G variant (fragment); PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma, D3S1249, HPTPG, RPTPG; 2.40A {Homo sapiens} Length = 627 Score = 27.8 bits (61), Expect = 3.8 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 14/81 (17%) Query: 10 PISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEI----------YSKLTPWQ 59 P+ I EL ++ +EDF EE++ A + T Y + + Sbjct: 4 PVKQFVKHIGELYSNNQHGFSEDF-EEVQRCTADMNITAEHSNHPENKHKNRYINILAYD 62 Query: 60 KTQV---SRHPNRPHYIDYIN 77 ++V + DYIN Sbjct: 63 HSRVKLRPLPGKDSKHSDYIN 83 >2inp_C Phenol hydroxylase component PHL; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_C Length = 328 Score = 27.5 bits (61), Expect = 3.9 Identities = 18/96 (18%), Positives = 25/96 (26%), Gaps = 12/96 (12%) Query: 90 RLFGDDPAM--QIG------LARFHGQPVAIIGQEKGSDTKSRIKHN----FGSPRPEGY 137 R FGD PA Q FH +P T++ I+ PR Y Sbjct: 19 RRFGDKPATRYQEASYDIEAKTNFHYRPQWDSEHTLNDPTRTAIRMEDWCAVSDPRQFYY 78 Query: 138 RKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARG 173 V F + + E + Sbjct: 79 GAYVGNRAKMQESAETSFGFCEKRNLLTRLSEETQK 114 >3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334 Score = 27.5 bits (60), Expect = 4.1 Identities = 7/71 (9%), Positives = 20/71 (28%), Gaps = 8/71 (11%) Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFI-------DTAGAYPGVDAEARGQGEAIARATEM 184 P + R+++ + I + A R Q + + + E Sbjct: 231 PEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEE- 289 Query: 185 CLKLQVPILSI 195 + ++ + Sbjct: 290 LYDEEFNVVKM 300 >3fga_B Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; PP2A, acetylation, alternative splicing, nucleus, phosphoprotein, cytoplasm, hydrolase, iron, manganese, metal-binding; HET: 0D5; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Length = 403 Score = 27.5 bits (61), Expect = 4.2 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 12/67 (17%) Query: 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93 SE+ RE + + TL IY K R + IN++F FI + G Sbjct: 140 SEDPRERD-FLKTTLHRIYGKFLG----------LRAYIRKQINNIFYRFIYE-TEHHNG 187 Query: 94 DDPAMQI 100 ++I Sbjct: 188 IAELLEI 194 >2j01_2 50S ribosomal protein L29; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: a.2.2.1 PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 3d5b_2 3d5d_2 3f1f_2 3f1h_2 3hux_2 3huz_2 2hgu_1 ... Length = 72 Score = 27.3 bits (61), Expect = 4.3 Identities = 9/30 (30%), Positives = 19/30 (63%) Query: 11 ISDLEAKIHELKKLSREDINEDFSEEIREL 40 +S++ ++ E +KLS ++ + E+ REL Sbjct: 3 LSEVRKQLEEARKLSPVELEKLVREKKREL 32 >1dkx_A Substrate binding domain of DNAK; DNAK, heat shock protein 70 kDa (HSP70), complex (molecular chaperone/peptide); 2.00A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 PDB: 3dpo_A* 3dpp_A* 3dpq_A* 1dkz_A 1dky_A 1bpr_A 2bpr_A 1dg4_A Length = 219 Score = 27.3 bits (60), Expect = 4.9 Identities = 8/51 (15%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 4 YLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSK 54 + + +E+ + L+ + + +++EL V + L EI + Sbjct: 167 DKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQ-VSQKLMEIAQQ 216 >3nkd_A Crispr-associated protein CAS1; crispr,CAS1,YGBT,nuclease, DNA recombination, DNA repair, IM system; 1.95A {Escherichia coli} Length = 305 Score = 27.1 bits (60), Expect = 5.0 Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 2/86 (2%) Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60 + LD + + + + E++R +E + + +K Sbjct: 103 AKLALDEDLRLK--VVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTW 160 Query: 61 TQVSRHPNRPHYIDYINSLFTHFISL 86 P D IN + S Sbjct: 161 NGRRYDPKDWEKGDTINQCISAATSC 186 >1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural genomics, oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1 Length = 346 Score = 27.1 bits (59), Expect = 5.0 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 1/71 (1%) Query: 155 ISFIDTAGAYP-GVDAEARGQGEAIARATEMCLKLQVPILSIIIGEGGSGGAMGIAAANF 213 I+ ID A YP E +G E + ++ G S + Sbjct: 44 INLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQ 103 Query: 214 VYMLEHAIYSV 224 ++ ++ Sbjct: 104 ALDRKNIREAL 114 >1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1 Length = 788 Score = 27.3 bits (59), Expect = 5.1 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 94 DDPAMQIGLARFHGQPVAII 113 P + G+ RF G+ VA++ Sbjct: 100 IQPLLANGVTRFVGEIVAVV 119 >2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus} Length = 111 Score = 27.0 bits (60), Expect = 5.2 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 6 DFEEPISDLEAKIHELKKLSRED-----INEDFSEEIRELEAMVCKTLSEIYSKLTP 57 + E + K+ EL L R+D I E ++ I L + + +I K Sbjct: 28 ESLESVERARNKLREL--LERDDVGIILITERLAQRIGSLPEVKFPIILQIPDKFGS 82 >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 Score = 27.0 bits (59), Expect = 5.5 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 1/85 (1%) Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240 E+ ++ I + + G G G G+ + + P + + + Sbjct: 159 GPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGK 218 Query: 241 AAQAAIAMKIIATDLQDLSIIDGII 265 A I + + D S+ID +I Sbjct: 219 HAIQGIGAGFV-PKILDRSVIDEVI 242 >2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Score = 26.5 bits (58), Expect = 7.1 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Query: 16 AKIHELKKLSRE--DINEDFSEEIRELEAMVCKTLSEIYSK 54 K+ LK L E ++ ++F E+ ELE + I+ + Sbjct: 94 EKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQ 134 >2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329 Score = 26.7 bits (58), Expect = 7.7 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%) Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFI------DTAGAYPGVDAEARGQGEAIARATEM 184 + R+++ ++I + + D P A + Q + +A+ E+ Sbjct: 230 SEFLSLYETERMIQELTSYEIDTHNIVVNQLLLDPNTTCPQCMARRKMQQKYLAQIEEL 288 >1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 Length = 907 Score = 26.5 bits (58), Expect = 8.0 Identities = 4/20 (20%), Positives = 9/20 (45%) Query: 94 DDPAMQIGLARFHGQPVAII 113 + P + +G +AI+ Sbjct: 266 ERPILNDSKIFQYGDALAIV 285 >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Length = 692 Score = 26.4 bits (58), Expect = 8.1 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 8 EEPISDLEAKIHELKKL--SREDINEDFSEEIRELEA 42 E ++L I EL+ + E + + +E+ E+ Sbjct: 643 EAEYNELLNYISELETILADEEVLLQLVRDELTEIRD 679 >3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} Length = 348 Score = 26.5 bits (58), Expect = 9.0 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%) Query: 155 ISFIDTAGAYPGVDAEARGQGEAIAR 180 I+ IDTA Y +E G A+A Sbjct: 66 INLIDTAPVYGFGHSEEIV-GRALAE 90 >2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Length = 514 Score = 26.1 bits (57), Expect = 9.5 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 8 EEPISDLEAKIHELKKL--SREDINEDFSEEIRELE 41 E +LEA I +L+ + + + + EE+ E++ Sbjct: 460 EGEHKELEALIKQLRHILDNHDALLNVIKEELNEIK 495 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0728 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,785,304 Number of extensions: 133959 Number of successful extensions: 758 Number of sequences better than 10.0: 1 Number of HSP's gapped: 726 Number of HSP's successfully gapped: 82 Length of query: 317 Length of database: 5,693,230 Length adjustment: 92 Effective length of query: 225 Effective length of database: 3,462,782 Effective search space: 779125950 Effective search space used: 779125950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.7 bits)