BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase
carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus
str. psy62]
         (317 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 317

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60
           MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK
Sbjct: 1   MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60

Query: 61  TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120
           TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD
Sbjct: 61  TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120

Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180
           TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR
Sbjct: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180

Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240
           ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR
Sbjct: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240

Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300
           AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET
Sbjct: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300

Query: 301 EIREHRRQKYLNIGRNL 317
           EIREHRRQKYLNIGRNL
Sbjct: 301 EIREHRRQKYLNIGRNL 317


>gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 306

 Score = 26.6 bits (57), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 29/123 (23%)

Query: 34  SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93
           SE I E + +  K L+ I+ K  P  +T+VS      H              L GD +F 
Sbjct: 33  SENIFENKPLSGKVLAMIFEK--PSTRTRVSFEVAMKH--------------LGGDTIFL 76

Query: 94  DDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153
               MQ+G A   G    ++ +   +       H+             RL+E+ +   +P
Sbjct: 77  SGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS-------------RLLELTEYATVP 123

Query: 154 VIS 156
           VI+
Sbjct: 124 VIN 126


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 25.8 bits (55), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDA 169
           P  +G+  AV LME+A    + ++   D      G+D+
Sbjct: 790 PNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDS 827


>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 435

 Score = 25.0 bits (53), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 142 RLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQV 190
           R+ME+    K  VI+F+       G DA    QG   +   + C  +Q+
Sbjct: 61  RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQL 109


>gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 86

 Score = 24.3 bits (51), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 4  YLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRE 39
          +L FEE +S+LE  I    KL R D+  D S  I E
Sbjct: 13 HLPFEEAVSELENII---AKLERGDVTLDESISIYE 45


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,824
Number of Sequences: 1233
Number of extensions: 7959
Number of successful extensions: 20
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 7
length of query: 317
length of database: 328,796
effective HSP length: 74
effective length of query: 243
effective length of database: 237,554
effective search space: 57725622
effective search space used: 57725622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)