BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (317 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780588|ref|YP_003065001.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK Sbjct: 1 MRHYLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRELEAMVCKTLSEIYSKLTPWQK 60 Query: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD Sbjct: 61 TQVSRHPNRPHYIDYINSLFTHFISLAGDRLFGDDPAMQIGLARFHGQPVAIIGQEKGSD 120 Query: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR Sbjct: 121 TKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIAR 180 Query: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR Sbjct: 181 ATEMCLKLQVPILSIIIGEGGSGGAMGIAAANFVYMLEHAIYSVISPEGAASILWRDSSR 240 Query: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET Sbjct: 241 AAQAAIAMKIIATDLQDLSIIDGIIPEPIGGAHRNPAQTISSVGEIISQFLSETSTYSET 300 Query: 301 EIREHRRQKYLNIGRNL 317 EIREHRRQKYLNIGRNL Sbjct: 301 EIREHRRQKYLNIGRNL 317 >gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 306 Score = 26.6 bits (57), Expect = 0.57, Method: Compositional matrix adjust. Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 29/123 (23%) Query: 34 SEEIRELEAMVCKTLSEIYSKLTPWQKTQVSRHPNRPHYIDYINSLFTHFISLAGDRLFG 93 SE I E + + K L+ I+ K P +T+VS H L GD +F Sbjct: 33 SENIFENKPLSGKVLAMIFEK--PSTRTRVSFEVAMKH--------------LGGDTIFL 76 Query: 94 DDPAMQIGLARFHGQPVAIIGQEKGSDTKSRIKHNFGSPRPEGYRKAVRLMEMADRFKIP 153 MQ+G A G ++ + + H+ RL+E+ + +P Sbjct: 77 SGSEMQLGRAETIGDTAKVLSRYVDAIVMRTTNHS-------------RLLELTEYATVP 123 Query: 154 VIS 156 VI+ Sbjct: 124 VIN 126 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 25.8 bits (55), Expect = 0.99, Method: Compositional matrix adjust. Identities = 11/38 (28%), Positives = 19/38 (50%) Query: 132 PRPEGYRKAVRLMEMADRFKIPVISFIDTAGAYPGVDA 169 P +G+ AV LME+A + ++ D G+D+ Sbjct: 790 PNRQGFENAVLLMELAVELPVSLLRLRDDFFNNSGIDS 827 >gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62] Length = 435 Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/49 (28%), Positives = 22/49 (44%) Query: 142 RLMEMADRFKIPVISFIDTAGAYPGVDAEARGQGEAIARATEMCLKLQV 190 R+ME+ K VI+F+ G DA QG + + C +Q+ Sbjct: 61 RIMELDSIIKHDVIAFLTHLAEIIGPDARFIHQGMTSSDILDTCFSIQL 109 >gi|254780467|ref|YP_003064880.1| exodeoxyribonuclease VII small subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 86 Score = 24.3 bits (51), Expect = 2.7, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 4 YLDFEEPISDLEAKIHELKKLSREDINEDFSEEIRE 39 +L FEE +S+LE I KL R D+ D S I E Sbjct: 13 HLPFEEAVSELENII---AKLERGDVTLDESISIYE 45 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 196,824 Number of Sequences: 1233 Number of extensions: 7959 Number of successful extensions: 20 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 7 length of query: 317 length of database: 328,796 effective HSP length: 74 effective length of query: 243 effective length of database: 237,554 effective search space: 57725622 effective search space used: 57725622 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)