Query gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 239
No_of_seqs 189 out of 410
Neff 4.2
Searched_HMMs 23785
Date Tue May 31 19:15:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780589.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y7m_A Hypothetical protein BS 99.5 4.2E-13 1.8E-17 99.9 10.9 95 48-168 52-155 (164)
2 1zat_A L,D-transpeptidase; L,D 99.4 5.2E-13 2.2E-17 99.3 6.7 103 52-168 127-242 (250)
3 1iuh_A 2'-5' RNA ligase; riken 38.7 19 0.0008 15.7 4.2 40 61-103 155-197 (198)
4 3omb_A Extracellular solute-bi 37.5 7.4 0.00031 18.2 0.6 23 1-23 2-30 (535)
5 1d8j_A General transcription f 33.4 15 0.00062 16.4 1.6 22 216-237 57-78 (81)
6 3euh_C MUKE, chromosome partit 33.2 9.8 0.00041 17.4 0.6 13 98-110 66-78 (234)
7 3euk_L Chromosome partition pr 26.9 9.5 0.0004 17.5 -0.3 104 98-215 65-212 (238)
8 2khf_A PLNJ; anti-microbial, b 24.8 20 0.00085 15.5 1.1 19 200-218 2-20 (26)
9 3hun_A Penicillin-binding prot 24.8 33 0.0014 14.2 3.4 23 50-73 70-92 (453)
10 2pbl_A Putative esterase/lipas 21.2 32 0.0013 14.3 1.5 12 58-69 48-59 (262)
No 1
>1y7m_A Hypothetical protein BSU14040; surface mutagenesis, cysteine proteases, cell WALL catabolism, structural genomics, PSI; 2.05A {Bacillus subtilis subsp} SCOP: b.160.1.1 d.7.1.1
Probab=99.47 E-value=4.2e-13 Score=99.85 Aligned_cols=95 Identities=28% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCC-CEEEECCC
Q ss_conf 57847999983786999986078896689998652132389887010178747507999840125875765-21420799
Q gi|254780589|r 48 PFHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKY-FLSINIGF 126 (239)
Q Consensus 48 ~~~pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y-~ls~~i~Y 126 (239)
...|..|.|.+++++|.+|..+ +++++|||+.|. .+.+||+|.|.|..+..+|++-+ ..++.++
T Consensus 52 ~~~~~~i~V~~~~~~l~~~~~~-----~~v~~~pv~~G~---------~~~~TP~G~~~i~~k~~~~~~p~g~~~~~l~- 116 (164)
T 1y7m_A 52 YTIPYHIAVSIGAKTLTLSLNN-----RVMKTYPIAVGK---------ILTQTPTGEFYIINRQRNPGGPFGAYWLSLS- 116 (164)
T ss_dssp GGCCEEEEEETTTTEEEEEETT-----EEEEEEECBEEB---------TTBCCCCEEEEEEEEEECCCGGGTTEEEEES-
T ss_pred CCCCCEEEEECCCCEEEEEECC-----EEEEEEEECCCC---------CCCCCCCCEEEEEEECCCCCCCCCCEEEECC-
T ss_conf 6798179995786589999799-----599998620457---------9996545269996322689998511687547-
Q ss_pred CCHHHHHCCCCCCCEEECCCC--------CCCCCEEECHHHHHHHHHHHH
Q ss_conf 898899729998826871677--------866718706466999999999
Q gi|254780589|r 127 PNEFDKAHNRTGADLMIHGEC--------ASAGCYAMNNKQMQEIYAIVR 168 (239)
Q Consensus 127 PN~~Dr~~grtG~~I~IHG~~--------~S~GC~amtd~~i~EIy~~v~ 168 (239)
++++.|||+. .|+|||.|+|++++++|.+++
T Consensus 117 -----------~~~~~IHGt~~p~~ig~~~ShGCIrl~~~d~~~l~~~v~ 155 (164)
T 1y7m_A 117 -----------AAHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVP 155 (164)
T ss_dssp -----------STTCEEECCSCGGGTTSEEESSCEECCHHHHHHHHHHCC
T ss_pred -----------CCEEEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHCCC
T ss_conf -----------732899851155557985778870639999999996199
No 2
>1zat_A L,D-transpeptidase; L,D-transpeptidation, peptidoglycan, beta-lactam insensitive transpeptidase, antibiotic resistance, transferase; 2.40A {Enterococcus faecium} SCOP: b.160.1.1 d.335.1.1 PDB: 2hkl_A
Probab=99.39 E-value=5.2e-13 Score=99.29 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=78.4
Q ss_pred EEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHH
Q ss_conf 79999837869999860788966899986521323898870101787475079998401258757652142079989889
Q gi|254780589|r 52 TVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFPNEFD 131 (239)
Q Consensus 52 i~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y~ls~~i~YPN~~D 131 (239)
-+|.|.+.++.|.+|+.+ ++++++||+.|.. +..||+|.|.|..+..++.+..+...+..|.....
T Consensus 127 ~yI~Vdl~~q~l~~y~~G-----~~v~~~~vstG~~---------~~~TP~G~~~I~~K~~~~~~~g~~~~~~~y~~~~~ 192 (250)
T 1zat_A 127 TYIEVDLENQHMWYYKDG-----KVALETDIVSGKP---------TTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVN 192 (250)
T ss_dssp CEEEEETTTTEEEEEETT-----EEEEEEECBCBCT---------TSCCCCEEEECCCCEEEEECCBCC--CCCBCCEEE
T ss_pred CEEEEECCCCEEEEEECC-----EEEEEEEEECCCC---------CCCCCEEEEEEEEEECCCEEECCCCCCCCCCCCCC
T ss_conf 399999501999999999-----9999987772889---------97222289998889749777056898887677763
Q ss_pred HHCCCCCCCEEECCCC-------------CCCCCEEECHHHHHHHHHHHH
Q ss_conf 9729998826871677-------------866718706466999999999
Q gi|254780589|r 132 KAHNRTGADLMIHGEC-------------ASAGCYAMNNKQMQEIYAIVR 168 (239)
Q Consensus 132 r~~grtG~~I~IHG~~-------------~S~GC~amtd~~i~EIy~~v~ 168 (239)
......+++|.|||++ .|+|||.|.++++++||..+.
T Consensus 193 ~~~~~~~~gi~iHgt~~~~~~g~~~~~~~~SHGCIrl~~~da~~ly~~v~ 242 (250)
T 1zat_A 193 YWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVE 242 (250)
T ss_dssp EEEECSSSSCEEEECTTCSCCSTTHHHHHCBSSSEEECHHHHHHHHHHCC
T ss_pred EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCC
T ss_conf 58843797699968997311243567887898681879999999995089
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=38.73 E-value=19 Score=15.67 Aligned_cols=40 Identities=20% Similarity=0.471 Sum_probs=27.5
Q ss_pred CEEEEEE--ECCCC-CEEEEEEEEECCCCCCCCCHHCCCCCCCCCE
Q ss_conf 6999986--07889-6689998652132389887010178747507
Q gi|254780589|r 61 NILEIWK--RNVDA-EYVLLKEYKICAWSGTFGPKIETGDEQAPEG 103 (239)
Q Consensus 61 ~~Lel~~--~~~~g-~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG 103 (239)
..+.||. .+.+| .|+.+.+|+. +|.-|.+.-||-.+-|||
T Consensus 155 ~~i~L~~S~~~~~g~~Y~~l~~~~L---~g~~~~~~~~~~~~~~~~ 197 (198)
T 1iuh_A 155 EGFALVRSELKPKGPVYTVLEKFSL---RGEHGREQAQGPGERPEG 197 (198)
T ss_dssp CEEEEEEEEECSSSEEEEEEEEEEC---CCCC--------------
T ss_pred CEEEEEEEEECCCCCEEEEEEEEEC---CCCCCCCCCCCCCCCCCC
T ss_conf 7699999985699982059899989---899999987787779989
No 4
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=37.48 E-value=7.4 Score=18.18 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=12.8
Q ss_pred CCCHHHHHH------HHHHHHHCCCCCCC
Q ss_conf 940468999------99999860466533
Q gi|254780589|r 1 MTNRYNILL------FALFIFLNGCHHSR 23 (239)
Q Consensus 1 M~~R~~~Ll------fal~i~L~gc~~~~ 23 (239)
|++|....+ .+++..|+||+++.
T Consensus 2 Mkrr~~~~~~a~~~~~~~~~~LaaCg~~~ 30 (535)
T 3omb_A 2 MRRQTMVKAGAVACAVALLGSLSACGGSK 30 (535)
T ss_dssp -----------------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 77779999999999999999997008999
No 5
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=33.41 E-value=15 Score=16.36 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHCCCCEEEEECCEEEECCCC
Q ss_conf 9858973279727668944888
Q gi|254780589|r 216 EKNHQEPFIQIINKQYVFFKGQ 237 (239)
Q Consensus 216 e~~~~~p~v~v~~~~Yvf~~~~ 237 (239)
|.-..-|.+.|.+|+|+|.+.=
T Consensus 57 EAL~nNPKi~v~dgKf~Fkp~Y 78 (81)
T 1d8j_A 57 EALVNNPKIEVIDGKYAFKPKY 78 (81)
T ss_dssp THHHHCTTEEECSSSEEECCTT
T ss_pred HHHCCCCCEEEECCEEEECCCC
T ss_conf 0403699504526846415776
No 6
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli}
Probab=33.18 E-value=9.8 Score=17.44 Aligned_cols=13 Identities=46% Similarity=0.922 Sum_probs=10.8
Q ss_pred CCCCCEEEEEEEC
Q ss_conf 7475079998401
Q gi|254780589|r 98 EQAPEGFYYIGWN 110 (239)
Q Consensus 98 ~kTPEG~Y~i~~~ 110 (239)
.++|||||++-++
T Consensus 66 i~apEgffYLrPr 78 (234)
T 3euh_C 66 IRAPEGFFYLRPR 78 (234)
T ss_dssp EECTTSCEEEEEC
T ss_pred EECCCCEEEECCC
T ss_conf 9768742786465
No 7
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 4.00A {Haemophilus ducreyi}
Probab=26.95 E-value=9.5 Score=17.52 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCCCCEEEEEEECCC--CCCCCCCEEEECCCCCHHHHHCCC------------CCCCEEECCC-----------------
Q ss_conf 747507999840125--875765214207998988997299------------9882687167-----------------
Q gi|254780589|r 98 EQAPEGFYYIGWNNL--NPNSKYFLSINIGFPNEFDKAHNR------------TGADLMIHGE----------------- 146 (239)
Q Consensus 98 ~kTPEG~Y~i~~~~~--np~S~y~ls~~i~YPN~~Dr~~gr------------tG~~I~IHG~----------------- 146 (239)
.++|||||++-++.. =|.|. =|..|-.-|+ .-.+||....
T Consensus 65 i~apEgffYLrP~~~tlI~rs~---------lSeldMlvGkvLc~lyLsperLa~~gift~~el~dell~l~de~kllk~ 135 (238)
T 3euk_L 65 IRAPEGFFYLRPKASTLIARSA---------MSEMEMLVGKVLCYLYLSPERLAQQGIFSQDDVYEELLNLADENKLLKA 135 (238)
T ss_dssp CCCSSSCBCEEECSSCSSCBCC---------CCHHHHHHHHHHHHHHTSTTSGGGTTCBCSHHHHHHHHC----------
T ss_pred EECCCCEEEECCCCCCCCCHHH---------HHHHHHHHHHHHHHHCCCHHHHHCCCEEEHHHHHHHHHHHHCHHHHHHH
T ss_conf 9768742786565556531766---------4488989988999970699896158802189999999863067999998
Q ss_pred --CCCCCCEEECHHHHHHHHHHHHHHHHHCCCCC--EEE----EEECCCCCHHHH-----HHHHCCCCHHHHHHHHHHHH
Q ss_conf --78667187064669999999999997508561--116----995556898898-----75425867378985356888
Q gi|254780589|r 147 --CASAGCYAMNNKQMQEIYAIVRDSLRGNMQSH--IQI----QAFPFRMTSKNM-----QLYQNNPNYSFWNMLKLGHD 213 (239)
Q Consensus 147 --~~S~GC~amtd~~i~EIy~~v~~a~~~~gQ~~--~~v----~~~Pfrmt~~n~-----~~~~~~~~~~FW~~Lk~gyd 213 (239)
..+.| ||-+.+-|---|+.+|+.= ++- |++ ..-.|+.|++-+ .|.-+++--+--+..++|+.
T Consensus 136 v~~R~~G----sDlD~~Kl~Ekvr~sL~rL-~Rlg~I~~~g~~d~~kf~iteAvfRF~a~vRs~dd~~eaq~rLIrdGea 210 (238)
T 3euk_L 136 VNPRSTG----SDLDRAKLAEKVGGALRRL-ARIGIITRVGEQNSKKFIISEAVFRFGADVRAGDDPREVQLRLIRDGEA 210 (238)
T ss_dssp ---------------CCSHHHHHHHHHHHH-HHTTSEEEC------CEEECGGGTTSCCCCSSSSCCTTHHHHHHHC---
T ss_pred HCCCCCC----CHHHHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCEEEECHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 7178998----5020899999999999998-8557568514787551775179887155234568778999999863764
Q ss_pred HH
Q ss_conf 99
Q gi|254780589|r 214 YF 215 (239)
Q Consensus 214 ~F 215 (239)
..
T Consensus 211 ~~ 212 (238)
T 3euk_L 211 TT 212 (238)
T ss_dssp --
T ss_pred CC
T ss_conf 46
No 8
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=24.85 E-value=20 Score=15.51 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6737898535688899985
Q gi|254780589|r 200 PNYSFWNMLKLGHDYFEKN 218 (239)
Q Consensus 200 ~~~~FW~~Lk~gyd~Fe~~ 218 (239)
.|..||..|..|+-.=|.-
T Consensus 2 awknfwsslrkgfydgeag 20 (26)
T 2khf_A 2 AWKNFWSSLRKGFYDGEAG 20 (26)
T ss_dssp CHHHHHHHHHHHHTTTHHH
T ss_pred CHHHHHHHHHHHCCCCHHH
T ss_conf 0787999998651354112
No 9
>3hun_A Penicillin-binding protein 4; ampicillin, beta-lactamase, serine type D-Ala, D-Ala-carboxypeptidase, antibiotics; HET: ZZ7; 2.00A {Staphylococcus aureus} PDB: 3hum_A*
Probab=24.76 E-value=33 Score=14.22 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=14.0
Q ss_pred CCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 847999983786999986078896
Q gi|254780589|r 50 HPTVIRIFKNENILEIWKRNVDAE 73 (239)
Q Consensus 50 ~pi~Irv~K~e~~Lel~~~~~~g~ 73 (239)
+|-.|.++-+..+. ||.+|.+.+
T Consensus 70 a~sail~da~tG~i-Ly~KN~d~~ 92 (453)
T 3hun_A 70 EPTSAVNVSQTGQL-LYQYNIDTK 92 (453)
T ss_dssp CCSEEEEEETTSBE-EEEESTTCC
T ss_pred CCEEEEEECCCCCE-EEEECCCCC
T ss_conf 76179999899949-335784988
No 10
>2pbl_A Putative esterase/lipase/thioesterase; YP_614486.1, putative thioesterase, structural genomics, joint center for structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Probab=21.16 E-value=32 Score=14.29 Aligned_cols=12 Identities=0% Similarity=0.268 Sum_probs=8.0
Q ss_pred CCCCEEEEEEEC
Q ss_conf 378699998607
Q gi|254780589|r 58 KNENILEIWKRN 69 (239)
Q Consensus 58 K~e~~Lel~~~~ 69 (239)
.+..+|.+|.-+
T Consensus 48 ~~~~~lDiy~P~ 59 (262)
T 2pbl_A 48 GDRHKFDLFLPE 59 (262)
T ss_dssp STTCEEEEECCS
T ss_pred CCCEEEEEEECC
T ss_conf 988179998279
Done!