Query gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 239
No_of_seqs 189 out of 410
Neff 4.2
Searched_HMMs 13730
Date Wed Jun 1 09:05:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780589.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zata1 b.160.1.1 (A:339-466) 99.5 4.6E-14 3.3E-18 104.3 6.8 104 51-168 4-120 (128)
2 d1y7ma1 b.160.1.1 (A:49-164) H 99.4 1.1E-12 8E-17 95.8 8.3 95 49-168 5-107 (116)
3 d1d8ja_ a.4.5.18 (A:) The cent 28.2 7.4 0.00054 16.7 0.6 22 216-237 57-78 (81)
4 d2pbla1 c.69.1.2 (A:1-261) Unc 17.2 25 0.0018 13.4 1.5 11 59-69 48-58 (261)
5 d1bhga3 c.1.8.3 (A:329-632) be 15.3 21 0.0015 13.9 0.7 13 203-215 282-294 (304)
6 d2q3la1 c.13.2.2 (A:1-125) Unc 15.1 25 0.0018 13.4 1.0 61 154-227 28-90 (125)
7 d1yb3a1 d.296.1.2 (A:2-167) Hy 14.7 21 0.0015 14.0 0.5 33 70-108 45-78 (166)
8 d3c70a1 c.69.1.20 (A:2-257) Hy 12.5 31 0.0023 12.8 0.9 13 141-153 6-18 (256)
9 d1pdaa2 d.50.2.1 (A:220-307) P 12.5 36 0.0027 12.4 1.4 14 92-105 17-30 (88)
10 d1dqua_ c.1.12.7 (A:) Isocitra 11.5 31 0.0022 12.9 0.6 12 99-110 362-373 (519)
No 1
>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal, catalytic domain {Enterococcus faecium [TaxId: 1352]}
Probab=99.46 E-value=4.6e-14 Score=104.35 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred CEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCCHH
Q ss_conf 47999983786999986078896689998652132389887010178747507999840125875765214207998988
Q gi|254780589|r 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFPNEF 130 (239)
Q Consensus 51 pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y~ls~~i~YPN~~ 130 (239)
..+|.|++++++|.||..+ +++++|+|+.|+. +..||+|.|.|..+..++....+......|.+..
T Consensus 4 ~~~I~Vdl~~q~l~l~~~g-----~~v~~~~vs~G~~---------~~~Tp~G~~~I~~k~~~~~~~~~~~~~~~~~~~~ 69 (128)
T d1zata1 4 DTYIEVDLENQHMWYYKDG-----KVALETDIVSGKP---------TTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPV 69 (128)
T ss_dssp SCEEEEETTTTEEEEEETT-----EEEEEEECBCBCT---------TSCCCCEEEECCCCEEEEECCBCC--CCCBCCEE
T ss_pred CCEEEEECCCCEEEEEECC-----EEEEEEECCCCCC---------CCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCH
T ss_conf 7199999867999999999-----9999855679988---------9847776488864127851234557788867603
Q ss_pred HHHCCCCCCCEEECCCC-------------CCCCCEEECHHHHHHHHHHHH
Q ss_conf 99729998826871677-------------866718706466999999999
Q gi|254780589|r 131 DKAHNRTGADLMIHGEC-------------ASAGCYAMNNKQMQEIYAIVR 168 (239)
Q Consensus 131 Dr~~grtG~~I~IHG~~-------------~S~GC~amtd~~i~EIy~~v~ 168 (239)
.......++++.|||.. +|+|||.|.|+++++||.++.
T Consensus 70 ~~~~~~~~~~~~~hg~~~~~~~~~~~~g~~~ShGCIRl~~~da~~ly~~v~ 120 (128)
T d1zata1 70 NYWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVE 120 (128)
T ss_dssp EEEEECSSSSCEEEECTTCSCCSTTHHHHHCBSSSEEECHHHHHHHHHHCC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 456541687201357865443235545787887656769899999996299
No 2
>d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=99.36 E-value=1.1e-12 Score=95.83 Aligned_cols=95 Identities=28% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 78479999837869999860788966899986521323898870101787475079998401258757652142079989
Q gi|254780589|r 49 FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFPN 128 (239)
Q Consensus 49 ~~pi~Irv~K~e~~Lel~~~~~~g~~~l~ktY~Ic~~sg~lGpK~~eGD~kTPEG~Y~i~~~~~np~S~y~ls~~i~YPN 128 (239)
..|..|.|.+.+++|.||+.+ +++++|||+.|.. +..||+|.|+|..+..++.+.|+-
T Consensus 5 ~~p~~I~Vd~~~~~l~~~~~g-----~~v~~~pvs~G~~---------~~~TP~G~~~i~~k~~~~~~~~~~-------- 62 (116)
T d1y7ma1 5 TIPYHIAVSIGAKTLTLSLNN-----RVMKTYPIAVGKI---------LTQTPTGEFYIINRQRNPGGPFGA-------- 62 (116)
T ss_dssp GCCEEEEEETTTTEEEEEETT-----EEEEEEECBEEBT---------TBCCCCEEEEEEEEEECCCGGGTT--------
T ss_pred CCCEEEEEECCCCEEEEEECC-----EEEEEEEECCCCC---------CCCCCCEEEEECCCCCCCCCCCCC--------
T ss_conf 887799999888999999999-----9999944043789---------987766666601222111377652--------
Q ss_pred HHHHHCCCCCCCEEECCCC--------CCCCCEEECHHHHHHHHHHHH
Q ss_conf 8899729998826871677--------866718706466999999999
Q gi|254780589|r 129 EFDKAHNRTGADLMIHGEC--------ASAGCYAMNNKQMQEIYAIVR 168 (239)
Q Consensus 129 ~~Dr~~grtG~~I~IHG~~--------~S~GC~amtd~~i~EIy~~v~ 168 (239)
.+....++++.|||.. +|+|||.|.++++++||..++
T Consensus 63 ---~~~~~~~~~~~~hg~~~~~~~g~~~ShGCIrl~~~da~~ly~~~~ 107 (116)
T d1y7ma1 63 ---YWLSLSAAHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVP 107 (116)
T ss_dssp ---EEEEESSTTCEEECCSCGGGTTSEEESSCEECCHHHHHHHHHHCC
T ss_pred ---EEEEECCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCC
T ss_conf ---789821677422122145557988799700529999999996699
No 3
>d1d8ja_ a.4.5.18 (A:) The central core domain of TFIIE beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.22 E-value=7.4 Score=16.71 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=18.0
Q ss_pred HHHCCCCEEEEECCEEEECCCC
Q ss_conf 9858973279727668944888
Q gi|254780589|r 216 EKNHQEPFIQIINKQYVFFKGQ 237 (239)
Q Consensus 216 e~~~~~p~v~v~~~~Yvf~~~~ 237 (239)
|.-..-|.+.|++|+|+|.+.=
T Consensus 57 EAL~nNPKi~v~dgKf~Fkp~Y 78 (81)
T d1d8ja_ 57 EALVNNPKIEVIDGKYAFKPKY 78 (81)
T ss_dssp THHHHCTTEEECSSSEEECCTT
T ss_pred HHCCCCCCEEECCCEEEECCCC
T ss_conf 0303699504427815425776
No 4
>d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=17.25 E-value=25 Score=13.43 Aligned_cols=11 Identities=0% Similarity=0.326 Sum_probs=6.9
Q ss_pred CCCEEEEEEEC
Q ss_conf 78699998607
Q gi|254780589|r 59 NENILEIWKRN 69 (239)
Q Consensus 59 ~e~~Lel~~~~ 69 (239)
+...|.||.-+
T Consensus 48 ~~~~lDiy~P~ 58 (261)
T d2pbla1 48 DRHKFDLFLPE 58 (261)
T ss_dssp TTCEEEEECCS
T ss_pred CCEEEEEECCC
T ss_conf 67279986348
No 5
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.35 E-value=21 Score=13.94 Aligned_cols=13 Identities=8% Similarity=-0.230 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7898535688899
Q gi|254780589|r 203 SFWNMLKLGHDYF 215 (239)
Q Consensus 203 ~FW~~Lk~gyd~F 215 (239)
+.++.-|+.|..+
T Consensus 282 d~~~~PK~a~~~~ 294 (304)
T d1bhga3 282 TRQRQPKSAAFLL 294 (304)
T ss_dssp CTTSCBCHHHHHH
T ss_pred CCCCCCCHHHHHH
T ss_conf 9998998889999
No 6
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=15.09 E-value=25 Score=13.43 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=37.6
Q ss_pred EECHHHHHHHHHHHHHHHHHCCCCCEEEEE--ECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 706466999999999999750856111699--55568988987542586737898535688899985897327972
Q gi|254780589|r 154 AMNNKQMQEIYAIVRDSLRGNMQSHIQIQA--FPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQII 227 (239)
Q Consensus 154 amtd~~i~EIy~~v~~a~~~~gQ~~~~v~~--~Pfrmt~~n~~~~~~~~~~~FW~~Lk~gyd~Fe~~~~~p~v~v~ 227 (239)
.+|.++++++...+++.++..++.++.+.+ --|. .-..-++|..+|-|..+. +.--.|.|.
T Consensus 28 ~lt~~D~~~~~~~l~~~l~~~~~~~v~~li~~~~F~----------G~~~~A~~ed~k~~~~h~---~~f~RiAiV 90 (125)
T d2q3la1 28 KLTHEDYEQMTPLLESALAGIKTPEIVALIDITELD----------GLSLHAAWDDLKLGLKHG---KEFKRVAII 90 (125)
T ss_dssp EECHHHHHHHHHHHHHHTTTCCSSCEEEEEEEEEEE----------EECHHHHHHHHHHHHHHG---GGEEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----------CCCHHHHHHHHHHHHHHH---CCCCEEEEE
T ss_conf 688999999999999999736796499999707778----------997777888777677514---043289999
No 7
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=14.66 E-value=21 Score=13.98 Aligned_cols=33 Identities=27% Similarity=0.648 Sum_probs=23.5
Q ss_pred CCCCEEEEEEEEECCCCCCCCCHHCCCC-CCCCCEEEEEE
Q ss_conf 8896689998652132389887010178-74750799984
Q gi|254780589|r 70 VDAEYVLLKEYKICAWSGTFGPKIETGD-EQAPEGFYYIG 108 (239)
Q Consensus 70 ~~g~~~l~ktY~Ic~~sg~lGpK~~eGD-~kTPEG~Y~i~ 108 (239)
-||+|+.. .||+-+.+-+.| || +-||+|+|++-
T Consensus 45 ~DgeW~~m-~YPhPaf~ikp~-----gevGatp~~~yFv~ 78 (166)
T d1yb3a1 45 IDGKWEEM-KYPHPAFAVKPG-----GEVGATPQGFYFVF 78 (166)
T ss_dssp ETTEEEEC-CSCEEEEEEETT-----EEEEEETTEEEEEE
T ss_pred ECCEEEEE-ECCCCCEEECCC-----CCCCCCCCEEEEEE
T ss_conf 76877760-079873564447-----51166764169999
No 8
>d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]}
Probab=12.48 E-value=31 Score=12.84 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=0.0
Q ss_pred EEECCCCCCCCCE
Q ss_conf 6871677866718
Q gi|254780589|r 141 LMIHGECASAGCY 153 (239)
Q Consensus 141 I~IHG~~~S~GC~ 153 (239)
|+|||.+.|..|+
T Consensus 6 vliHG~~~~~~~w 18 (256)
T d3c70a1 6 VLIHTICHGAWIW 18 (256)
T ss_dssp EEECCTTCCGGGG
T ss_pred EEECCCCCCHHHH
T ss_conf 9839999998999
No 9
>d1pdaa2 d.50.2.1 (A:220-307) Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.46 E-value=36 Score=12.45 Aligned_cols=14 Identities=36% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHCCCCCCCCCEEE
Q ss_conf 01017874750799
Q gi|254780589|r 92 KIETGDEQAPEGFY 105 (239)
Q Consensus 92 K~~eGD~kTPEG~Y 105 (239)
|.-+|++++|.|.|
T Consensus 17 ~~L~ggC~~PIga~ 30 (88)
T d1pdaa2 17 TRLEGACQVPIGSY 30 (88)
T ss_dssp HHTTCCTTSCEEEE
T ss_pred HHHCCCCCCCCCEE
T ss_conf 98389998861113
No 10
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans [TaxId: 162425]}
Probab=11.47 E-value=31 Score=12.89 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=0.0
Q ss_pred CCCCEEEEEEEC
Q ss_conf 475079998401
Q gi|254780589|r 99 QAPEGFYYIGWN 110 (239)
Q Consensus 99 kTPEG~Y~i~~~ 110 (239)
|||||+|.+...
T Consensus 362 Rt~eG~y~~k~g 373 (519)
T d1dqua_ 362 RTREGYYRYQGG 373 (519)
T ss_dssp CCTTCCEEECCS
T ss_pred CCCCCCEEECCC
T ss_conf 687860353587
Done!