RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780589|ref|YP_003065002.1| hypothetical protein
CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
         (239 letters)



>gnl|CDD|129652 TIGR00561, pntA, NAD(P) transhydrogenase, alpha subunit.  In some
           species, such as Rhodospirillum rubrum, the alpha chain
           is replaced by two shorter chains, both with some
           homology to the full-length alpha chain modeled here.
           These score below the trusted cutoff.
          Length = 511

 Score = 28.4 bits (63), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 184 FPFRMTSKNMQLYQNNPNYSFWNMLKL 210
            P R+ +++ QLY  N      N+LKL
Sbjct: 314 LPSRLPTQSSQLYGTN----LVNLLKL 336


>gnl|CDD|161728 TIGR00132, gatA, glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)
           amidotransferase, A subunit.  This orthology group is
           more narrowly defined here than in Proc Natl Acad Aci
           USA 94, 11819-11826 (1997). In particular, a Rhodococcus
           homolog found in association with nitrile hydratase
           genes and described as an enantiomer-selective amidase
           active on several 2-aryl propionamides, is excluded
           here. It is likely, however, that the amidase subunit
           GatA is not exclusively a part of the Glu-tRNA(Gln)
           amidotransferase heterotrimer and restricted to that
           function in all species.
          Length = 460

 Score = 27.3 bits (61), Expect = 3.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 46  TSPFHPTVIRIFKNENILEIWKRNVD 71
             P+  TVI   K    L I K N+D
Sbjct: 85  IPPYDATVIERLKQAGALIIGKTNMD 110


>gnl|CDD|184082 PRK13488, PRK13488, chemoreceptor glutamine deamidase CheD;
           Provisional.
          Length = 157

 Score = 26.8 bits (60), Expect = 5.5
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 35  ENLIISMQKKRTSPFHPTVI-----RIFK-NENILEIWKRNVDAEYVLLKEYKI 82
             LI  M K                 +F  + N L I +RN+++    LK+  I
Sbjct: 68  PLLIEEMVKLGARKSKLEAKLAGGAAMFDFSSNNLNIGERNIESAKETLKKLGI 121


>gnl|CDD|166584 PLN02943, PLN02943, aminoacyl-tRNA ligase.
          Length = 958

 Score = 26.4 bits (58), Expect = 6.5
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 35  ENLIISMQKKRTSPFHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICA 84
           E LI+S   + + P     I+ F+N   L    RN  AEY +    +I A
Sbjct: 774 EALIVSPWPQTSLPKDLKSIKRFENLQSLTRAIRNARAEYSVEPAKRISA 823


>gnl|CDD|152554 pfam12119, DUF3581, Protein of unknown function (DUF3581).  This
           protein is found in bacteria. Proteins in this family
           are about 240 amino acids in length.
          Length = 218

 Score = 26.4 bits (59), Expect = 7.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 216 EKNHQEPFIQIINKQYVFFKGQT 238
           E  H E  I+   K YV F G+ 
Sbjct: 106 EVTHDEVLIESFIKNYVAFSGKN 128


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,904,567
Number of extensions: 236735
Number of successful extensions: 435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 11
Length of query: 239
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 148
Effective length of database: 4,028,145
Effective search space: 596165460
Effective search space used: 596165460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)