RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780589|ref|YP_003065002.1| hypothetical protein
CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62]
(239 letters)
>d1zata1 b.160.1.1 (A:339-466) L,D-transpeptidase, C-terminal,
catalytic domain {Enterococcus faecium [TaxId: 1352]}
Length = 128
Score = 30.2 bits (67), Expect = 0.16
Identities = 12/94 (12%), Positives = 23/94 (24%), Gaps = 13/94 (13%)
Query: 88 TFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIH--- 144
P G +Y+ + K + + + + IH
Sbjct: 27 ETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNDDGTPYESPVNYWMPIDWTGVGIHDSD 86
Query: 145 ----------GECASAGCYAMNNKQMQEIYAIVR 168
S GC M+E++ +V
Sbjct: 87 WQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVE 120
>d1y7ma1 b.160.1.1 (A:49-164) Hypothetical protein YkuD, C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 116
Score = 29.0 bits (64), Expect = 0.39
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 17/118 (14%)
Query: 51 PTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWN 110
P I + L + N ++K Y I G + TG+ G
Sbjct: 7 PYHIAVSIGAKTLTLSLNNR-----VMKTYPIA--VGKILTQTPTGEFYIINRQRNPGG- 58
Query: 111 NLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVR 168
P Y+LS++ + + G+ S GC M+NK + E+ +IV
Sbjct: 59 ---PFGAYWLSLSAAHYGIHGTNNPASI------GKAVSKGCIRMHNKDVIELASIVP 107
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic
core {Vaccinia virus [TaxId: 10245]}
Length = 230
Score = 28.3 bits (63), Expect = 0.57
Identities = 5/37 (13%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 45 RTSPFHPTVIRIFKNENILEIWK-RNVDAEYVLLKEY 80
+ + T++ + K++N L++ D ++ ++
Sbjct: 191 KRAYMATTILEMVKDKNFLDVVSKTTFDEFLSIVVDH 227
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
{Helicobacter pylori [TaxId: 210]}
Length = 221
Score = 27.6 bits (61), Expect = 0.94
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 193 MQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYV 232
Y++N + + + H+Y EKN ++ +I+N+ Y
Sbjct: 153 TYTYKHNNSGGLNSSNSIIHEYLEKNKEDAIHKILNRMYA 192
>d2f2ha2 b.30.5.11 (A:1-247) Putative glucosidase YicI, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 247
Score = 27.2 bits (60), Expect = 1.4
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 157 NKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFE 216
+ Q + RD Q++ I PF MT++ + N+P + + +
Sbjct: 173 VRNGQTVETWNRDGGTSTEQAYKNI---PFYMTNRGYGVLVNHPQCVSFEVGSEKVSKVQ 229
Query: 217 KNHQEPFIQIINKQYVFFKGQT 238
+ + ++ +Y G T
Sbjct: 230 FSVESEYL-----EYFVIDGPT 246
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 25.9 bits (56), Expect = 3.6
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 7/128 (5%)
Query: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVR 168
W L+ + D N GA ++ ++N
Sbjct: 40 WQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFM------- 92
Query: 169 DSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIIN 228
+++ S I + + NP + L H ++ ++ +
Sbjct: 93 EAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFL 152
Query: 229 KQYVFFKG 236
+ ++F+ G
Sbjct: 153 ESFLFYSG 160
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 25.5 bits (55), Expect = 4.6
Identities = 13/101 (12%), Positives = 22/101 (21%)
Query: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVR 168
WN + P + D GA ++ N E
Sbjct: 42 WNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKS 101
Query: 169 DSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLK 209
S + FR + +N L + +
Sbjct: 102 YSNIFMTLASTPQINEAFRWSEENENLQRKAKIIMSYYNGD 142
>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId:
562]}
Length = 129
Score = 25.0 bits (53), Expect = 6.3
Identities = 10/107 (9%), Positives = 29/107 (27%)
Query: 118 YFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQS 177
++LS+ I F + + ++ + + ++ + ++
Sbjct: 5 HYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLER 64
Query: 178 HIQIQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFI 224
I + + P Y + LG + +I
Sbjct: 65 LTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYI 111
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 24.8 bits (52), Expect = 7.2
Identities = 9/67 (13%), Positives = 26/67 (38%)
Query: 141 LMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQIQAFPFRMTSKNMQLYQNNP 200
+++HG +A + ++++ + + L G +S M +Q +
Sbjct: 15 VLLHGWGLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGALSLADMAEAVLQQAPDKA 74
Query: 201 NYSFWNM 207
+ W++
Sbjct: 75 IWLGWSL 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.431
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 925,174
Number of extensions: 42322
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 23
Length of query: 239
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 156
Effective length of database: 1,268,006
Effective search space: 197808936
Effective search space used: 197808936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)