BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62] (239 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780589|ref|YP_003065002.1| hypothetical protein CLIBASIA_02380 [Candidatus Liberibacter asiaticus str. psy62] Length = 239 Score = 501 bits (1290), Expect = e-144, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE 60 MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE Sbjct: 1 MTNRYNILLFALFIFLNGCHHSRSLIDKAEHPLSENLIISMQKKRTSPFHPTVIRIFKNE 60 Query: 61 NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL 120 NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL Sbjct: 61 NILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIGWNNLNPNSKYFL 120 Query: 121 SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180 SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ Sbjct: 121 SINIGFPNEFDKAHNRTGADLMIHGECASAGCYAMNNKQMQEIYAIVRDSLRGNMQSHIQ 180 Query: 181 IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI 239 IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI Sbjct: 181 IQAFPFRMTSKNMQLYQNNPNYSFWNMLKLGHDYFEKNHQEPFIQIINKQYVFFKGQTI 239 >gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 26.6 bits (57), Expect = 0.40, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 17/102 (16%) Query: 49 FHPTVIRIFKNENILEIWKRNVDAEYVLLKEYKICAWSGTFGPKIETGDEQAPEGFYYIG 108 F +I ENI E + + + L KE K +S GDE GF Sbjct: 160 FQEFMIMPVGAENIREAIRMGAEVFHTLKKELKSKGYS------TNVGDEG---GF---- 206 Query: 109 WNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASA 150 +PN K S N +KA G DL+I +CA++ Sbjct: 207 ----SPNLKTADSALDLIANSIEKAGYNAGKDLLIALDCAAS 244 >gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 467 Score = 25.0 bits (53), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 30 EHPLSENLIISMQKKRTSPFHPTVIRI-------FKNENILEIWKRNVDAEYVLLKEYKI 82 E P+ ++L+I + + R V I + + +E+ K +DAE + L+ + Sbjct: 318 EVPMVDDLVIPIGRARIHRQGSDVTIISFGIGMTYATKAAIELEKNGIDAELIDLRTIRP 377 Query: 83 CAWSGTFGPKIETG 96 W F +TG Sbjct: 378 MDWQTIFESVKKTG 391 >gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 332 Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 18/55 (32%) Query: 101 PEGFYYIGWNNLNPNSKYFLSINIGFPNEFDKAHNRTGADLMIHGECASAGCYAM 155 PE F+ + W NL F A+ R+G ++IHG + G A+ Sbjct: 127 PESFFTV-WANL-----------------FQTANLRSGQTVLIHGGSSGIGTTAI 163 >gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] Length = 118 Score = 21.9 bits (45), Expect = 10.0, Method: Compositional matrix adjust. Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 20 HHSRSLIDKAEHPLSENLIISMQKK 44 HH + I++ E+P +EN+ I + K+ Sbjct: 68 HHCLNEIEELENPTAENIAIWIWKR 92 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.431 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 168,208 Number of Sequences: 1233 Number of extensions: 7065 Number of successful extensions: 19 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 5 length of query: 239 length of database: 328,796 effective HSP length: 71 effective length of query: 168 effective length of database: 241,253 effective search space: 40530504 effective search space used: 40530504 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 37 (18.9 bits)