Query gi|254780590|ref|YP_003065003.1| hypothetical protein CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 91
No_of_seqs 38 out of 40
Neff 3.4
Searched_HMMs 33803
Date Wed Jun 1 15:29:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780590.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3d0s_A Transcriptional regula 44.4 5.2 0.00016 21.0 -0.1 40 37-81 12-51 (62)
2 >1a8r_A GTP cyclohydrolase I; 43.5 15 0.00045 18.1 2.2 37 45-81 32-68 (79)
3 >3hot_A Transposable element m 37.6 21 0.00061 17.4 2.1 36 52-87 25-61 (65)
4 >1ais_B TFB TFIIB, protein (tr 30.9 42 0.0012 15.5 3.6 46 21-66 28-82 (104)
5 >1is8_A GTP cyclohydrolase I; 27.7 16 0.00048 18.0 0.2 35 47-81 46-80 (93)
6 >1un2_A DSBA, thiol-disulfide 24.1 55 0.0016 14.8 3.0 28 29-58 55-82 (86)
7 >1c9b_A General transcription 19.1 70 0.0021 14.2 4.0 38 20-57 18-55 (108)
8 >2va8_A SSO2462, SKI2-type hel 18.2 73 0.0022 14.0 4.9 44 40-83 97-145 (151)
9 >3k11_A Putative glycosyl hydr 18.1 74 0.0022 14.0 2.7 39 50-88 148-186 (303)
10 >3k59_A POL II, DNA polymerase 17.2 60 0.0018 14.6 1.4 27 60-86 16-42 (80)
No 1
>>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* (A:1-23,A:109-147)
Probab=44.43 E-value=5.2 Score=20.95 Aligned_cols=40 Identities=35% Similarity=0.524 Sum_probs=32.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 997288899999999999999999995838999999999999970
Q gi|254780590|r 37 GMAEGIEPEIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLA 81 (91)
Q Consensus 37 al~~GIepe~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~ 81 (91)
|+-+|++|..+|+-+|..-+.+ -.+-+..|+.-|..|+|.
T Consensus 12 ~~~~~~~~~~~~H~aL~~wL~~-----rPeVA~~LLraLArRLRr 51 (62)
T 3d0s_A 12 GIFQGVEPSAIARDALRSWIAD-----RPEISEQLLRVLARRLRR 51 (62)
T ss_dssp STTSSCCSSTTHHHHHHHTTSS-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHH
T ss_conf 8440799999999999999987-----999999999999999999
No 2
>>1a8r_A GTP cyclohydrolase I; purine hydrolysis, pterine synthesis; HET: GTP; 2.10A {Escherichia coli} (A:1-79)
Probab=43.48 E-value=15 Score=18.14 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999995838999999999999970
Q gi|254780590|r 45 EIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLA 81 (91)
Q Consensus 45 e~lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~ 81 (91)
...-...+-.+++++...-|||....=+..+|+||..
T Consensus 32 ~~~~~~~ie~~vr~iL~~lGeD~~regL~~TP~RvAk 68 (79)
T 1a8r_A 32 NETRKSLIAGHMTEIMQLLNLDLADDSLMETPHRIAK 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 8999999999999999997318675343448899999
No 3
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:1-65)
Probab=37.59 E-value=21 Score=17.37 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999999583899-9999999999970577887
Q gi|254780590|r 52 ITQAIRETVRIHGEEKM-ESLLKSLMSRMLAGEFSPE 87 (91)
Q Consensus 52 lfaAl~elv~~~GEe~~-a~l~e~l~~Rv~~GeFt~~ 87 (91)
.+-|...++..||++.. -.-++.|-.|.++|.|+++
T Consensus 25 ~~ea~~~~c~~~G~~~~~~~~~~~Wf~rF~~G~~dl~ 61 (65)
T 3hot_A 25 AAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVD 61 (65)
T ss_dssp HHHHHHHHHHHTCSCSCCHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999846688878899999999864886667
No 4
>>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle; HET: DNA 5IU; 2.10A {Pyrococcus woesei} (B:1-104)
Probab=30.85 E-value=42 Score=15.52 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---------HHHHHHHCHH
Q ss_conf 999999999999999999728889999999999999---------9999995838
Q gi|254780590|r 21 EKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQAI---------RETVRIHGEE 66 (91)
Q Consensus 21 Eq~~~Ale~~~eAWaEal~~GIepe~lA~AAlfaAl---------~elv~~~GEe 66 (91)
+-...|..|+..++..+...|-+|..+|-|+++.|- .+.+...+-+
T Consensus 28 ~v~~tA~~~~~r~~~~~~~~~~~~~~iaaaclylA~k~~~~~~~l~~i~~~~~~~ 82 (104)
T 1ais_B 28 HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVD 82 (104)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
T ss_conf 9999999999999760201256499899999999998647898899999998137
No 5
>>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} (A:1-93)
Probab=27.69 E-value=16 Score=17.98 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999995838999999999999970
Q gi|254780590|r 47 IANAAITQAIRETVRIHGEEKMESLLKSLMSRMLA 81 (91)
Q Consensus 47 lA~AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~ 81 (91)
.-...+..|++++....|||....=+..+|+||..
T Consensus 46 ~~~~~i~~av~~iL~~lGeD~~regL~~TP~Rvak 80 (93)
T 1is8_A 46 LNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAAT 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSTTTTTHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHCCCCCCCCCHHCHHHHHH
T ss_conf 25899999999999996799996210146999999
No 6
>>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} (A:1-48,A:160-197)
Probab=24.09 E-value=55 Score=14.78 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999972888999999999999999
Q gi|254780590|r 29 YQNEAWAEGMAEGIEPEIIANAAITQAIRE 58 (91)
Q Consensus 29 ~~~eAWaEal~~GIepe~lA~AAlfaAl~e 58 (91)
-+.+||+=|+.-|||..+ .-.||.++++
T Consensus 55 ~lt~awa~a~~~~~e~~v--~~~lf~~~q~ 82 (86)
T 1un2_A 55 DLTQAWAVAMALGVEDKV--TVPLFEGVQK 82 (86)
T ss_dssp HHHHHHHHHHHHTCHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHH--HHHHHHHHHH
T ss_conf 999999999986988999--9999999998
No 7
>>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix; 2.65A {Homo sapiens} (A:100-207)
Probab=19.07 E-value=70 Score=14.15 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999999999997288899999999999999
Q gi|254780590|r 20 HEKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQAIR 57 (91)
Q Consensus 20 ~Eq~~~Ale~~~eAWaEal~~GIepe~lA~AAlfaAl~ 57 (91)
.+-+..|.+.+..+-..++..|-.|..+|-|++..|-+
T Consensus 18 ~~i~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~a~r 55 (108)
T 1c9b_A 18 KQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQ 55 (108)
T ss_dssp HHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 66899999999999987786388733299999999999
No 8
>>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-binding, nucleotide-binding; 2.30A {Sulfolobus solfataricus} (A:508-658)
Probab=18.21 E-value=73 Score=14.03 Aligned_cols=44 Identities=18% Similarity=0.053 Sum_probs=34.6
Q ss_pred CCCCHHHHHH-----HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 2888999999-----9999999999999583899999999999997057
Q gi|254780590|r 40 EGIEPEIIAN-----AAITQAIRETVRIHGEEKMESLLKSLMSRMLAGE 83 (91)
Q Consensus 40 ~GIepe~lA~-----AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~Ge 83 (91)
=||.|-.+-. +.+..++.++++..|-......+..+..|+..|-
T Consensus 97 y~i~~Gdlq~l~~~a~~~~~~~~~~~~~lg~~~~~~~L~~l~~Rl~~Gv 145 (151)
T 2va8_A 97 YNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGI 145 (151)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 6978789999999999999999999998498899999999999998599
No 9
>>3k11_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} (A:1-184,A:327-445)
Probab=18.06 E-value=74 Score=14.01 Aligned_cols=39 Identities=10% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 999999999999958389999999999999705778877
Q gi|254780590|r 50 AAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFSPER 88 (91)
Q Consensus 50 AAlfaAl~elv~~~GEe~~a~l~e~l~~Rv~~GeFt~~r 88 (91)
-|+-+++-++-+.++.+...++++...+-|..|++.++-
T Consensus 148 Ga~ga~~i~~~~~~~~~~~~~~id~~~~~i~~~q~RLSg 186 (303)
T 3k11_A 148 GAVCTAXIKLRLKDESLPVDGLIQNYFDFIINKEYRLSA 186 (303)
T ss_dssp HHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 689999999975300577899999999998723996869
No 10
>>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli k-12} PDB: 3k57_A* 3k58_A* 3k5a_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 1q8i_A* (A:642-682,A:748-786)
Probab=17.23 E-value=60 Score=14.56 Aligned_cols=27 Identities=22% Similarity=0.559 Sum_probs=22.7
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999583899999999999997057788
Q gi|254780590|r 60 VRIHGEEKMESLLKSLMSRMLAGEFSP 86 (91)
Q Consensus 60 v~~~GEe~~a~l~e~l~~Rv~~GeFt~ 86 (91)
-+++-.+....++...-++.++|+|+.
T Consensus 16 ~riF~~q~~~~yir~~v~~t~aGe~Ds 42 (80)
T 3k59_A 16 LRIFRNEPYQEYVRETIDKLMAGELDS 42 (80)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTCCGS
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 999769999999999999997699989
Done!