RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780590|ref|YP_003065003.1| hypothetical protein
CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>gnl|CDD|146778 pfam04317, DUF463, YcjX-like family, DUF463.  Some members of this
           family are thought to possess an ATP-binding domain
           towards their N-terminus.
          Length = 443

 Score = 26.0 bits (58), Expect = 2.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 32  EAWAEGMAEGIEPEIIANAAITQAIRETVRIHGEEKMESL 71
           EA      EG E E++A AAI +A RE +  H  +++ ++
Sbjct: 337 EARQRAAFEGAETEVMAIAAI-RATREGMVTHDGQELPAI 375


>gnl|CDD|32920 COG3106, COG3106, Predicted ATPase [General function prediction
           only].
          Length = 467

 Score = 25.3 bits (55), Expect = 3.6
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 32  EAWAEGMAEGIEPEIIANAAITQAIRETVRIHGEEKMESL 71
            AW     EGI  + +A A++ +A R      G EK+ ++
Sbjct: 362 RAWQNAAFEGISMDCLALASV-RATRSGTVDQGGEKIPAI 400


>gnl|CDD|107340 cd06345, PBP1_ABC_ligand_binding_like_10, Type I periplasmic
           ligand-binding domain of uncharacterized ABC (Atpase
           Binding Cassette)-type active transport systems that are
           predicted to be involved in uptake of amino acids,
           peptides, or inorganic ions.  This subgroup includes the
           type I periplasmic ligand-binding domain of
           uncharacterized ABC (Atpase Binding Cassette)-type
           active transport systems that are predicted to be
           involved in uptake of amino acids, peptides, or
           inorganic ions. This subgroup has high sequence
           similarity to members of the family of hydrophobic amino
           acid transporters (HAAT), such as
           leucine/isoleucine/valine binding protein (LIVBP);
           however its ligand specificity has not been determined
           experimentally.
          Length = 344

 Score = 24.2 bits (53), Expect = 7.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 20  HEKMQVAIEYQNEAWAEGMAEGIEP 44
           H     AI  ++ AW +G+  GI+ 
Sbjct: 142 HGFKTAAIVAEDAAWGKGIDAGIKA 166


>gnl|CDD|34211 COG4573, GatZ, Predicted tagatose 6-phosphate kinase [Carbohydrate
           transport and metabolism].
          Length = 426

 Score = 24.1 bits (52), Expect = 9.1
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 41  GIEPEIIANAAIT--QAIRETVRIHGEEKMESLLKSLMSRMLA 81
           G   E +   A+T  +A R T+R H +      L    +R++A
Sbjct: 179 GGAAEALDELAVTTPEAARNTLRAHRKAFEARGLAEAWTRVIA 221


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.313    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 987,225
Number of extensions: 41044
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 11
Length of query: 91
Length of database: 6,263,737
Length adjustment: 60
Effective length of query: 31
Effective length of database: 4,967,197
Effective search space: 153983107
Effective search space used: 153983107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)