RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780590|ref|YP_003065003.1| hypothetical protein
CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.1 bits (64), Expect = 0.23
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 2   ESIR----SVEKKTQEFDAL--LLHEKMQVAIEYQNEAWAEGMAEGIEPEIIANAAITQA 55
           ESIR       K+ QE DA   ++ ++ +   +   E W +  +E +E   I N    +A
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 144


>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
           5'-phosphate, vitamin B6, phosphorylation, transferase;
           2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
          Length = 283

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 33  AWAEGMAEGIEPE---IIANAAITQAIRETVRIHGEE 66
               G+ +G         A   + + +R T +   +E
Sbjct: 238 QLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDE 274


>1p9r_A General secretion pathway protein E; bacterial type II secretion
           system cytoplasmic protein - GSPE, putative ATPase/ ATP
           binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
           PDB: 1p9w_A*
          Length = 418

 Score = 25.1 bits (54), Expect = 3.7
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 45  EIIANAAITQAIRETVRIHGEEKMESLLKSLMSRMLAGEFSPERVI 90
           E+I + A  QA+ + +R        S+    + ++  G  S E V+
Sbjct: 366 ELIHSEAGEQAMEKHIR----ATTPSIRDDGLDKVRQGITSLEEVM 407


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 713,105
Number of extensions: 27466
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 9
Length of query: 91
Length of database: 5,693,230
Length adjustment: 58
Effective length of query: 33
Effective length of database: 4,287,078
Effective search space: 141473574
Effective search space used: 141473574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.7 bits)