RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780590|ref|YP_003065003.1| hypothetical protein
CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62]
         (91 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 23.2 bits (49), Expect = 6.3
 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 43 EPEIIAN--AAITQAIRETVRIHGEEKMESLLKSLMSRML 80
          E + I    A I    +    + G  K + + K L   +L
Sbjct: 21 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL 60


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.333 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,961
Number of extensions: 11691
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.4 bits)