RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780590|ref|YP_003065003.1| hypothetical protein CLIBASIA_02385 [Candidatus Liberibacter asiaticus str. psy62] (91 letters) >d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} Length = 584 Score = 23.2 bits (49), Expect = 6.3 Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%) Query: 43 EPEIIAN--AAITQAIRETVRIHGEEKMESLLKSLMSRML 80 E + I A I + + G K + + K L +L Sbjct: 21 EIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLL 60 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.313 0.127 0.333 Gapped Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 305,961 Number of extensions: 11691 Number of successful extensions: 24 Number of sequences better than 10.0: 1 Number of HSP's gapped: 24 Number of HSP's successfully gapped: 5 Length of query: 91 Length of database: 2,407,596 Length adjustment: 55 Effective length of query: 36 Effective length of database: 1,652,446 Effective search space: 59488056 Effective search space used: 59488056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 47 (22.4 bits)