HHsearch alignment for GI: 254780591 and conserved domain: COG0404

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].
Probab=100.00  E-value=1.3e-41  Score=262.06  Aligned_cols=270  Identities=17%  Similarity=0.123  Sum_probs=202.7

Q ss_pred             EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf             76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r    4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF   83 (273)
Q Consensus         4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (273)
T Consensus        51 fDvShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~  130 (379)
T COG0404          51 FDVSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLER  130 (379)
T ss_pred             EECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHH
T ss_conf             86468569999898999999977056667677774887245879998874179997269869999476662889999987


Q ss_pred             HH--HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCH-----------HHHHHCCCCCCCCCH-------
Q ss_conf             21--000122356884369999718543222111234566--44410-----------122210135555796-------
Q gi|254780591|r   84 YK--LRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS--IADVL-----------LHRTWGHNEKIASDI-------  141 (273)
Q Consensus        84 ~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~-------  141 (273)
T Consensus       131 ~~~~~~~~v~~~~~t~~~~~lalqGPkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~  210 (379)
T COG0404         131 HQAGPDLDVTLTSVTEDLAVLALQGPKAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAE  210 (379)
T ss_pred             HHCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEECHH
T ss_conf             51368860597653554899998786789999874465532358835788877057734999946634787589973689


Q ss_pred             ---HHHHHHHHH-----------------HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---788888875-----------------201334565432212331001112201331475213310132100124443
Q gi|254780591|r  142 ---KTYHELRIN-----------------HGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIR  201 (273)
Q Consensus       142 ---~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~  201 (273)
T Consensus       211 ~a~~vw~aL~~aG~~~g~~P~Gl~A~dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k~dFiGk~al~~~k~~g~~r  290 (379)
T COG0404         211 DAAAVWDALLEAGEKFGVKPCGLGARDTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLDKDDFIGKAALLREKAKGVRR  290 (379)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCE
T ss_conf             99999999997200238557600356675664576432643599989755676208227876776899999667417761


Q ss_pred             EEEEEEECCCC-CCCCCCEEE-ECCEE-EEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf             47887401345-667898872-46779-6799983478------336899813103665678648868889999748876
Q gi|254780591|r  202 KRPMIITGTDD-LPPSGSPIL-TDDIE-IGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWY  272 (273)
Q Consensus       202 ~~~~~~~~~~~-~~~~g~~i~-~~g~~-VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~  272 (273)
T Consensus       291 ~lVgl~~~~~~~~~~~g~~v~~~~g~~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~  370 (379)
T COG0404         291 KLVGLKLDDKGPVLRGGEPVLDADGEVEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFY  370 (379)
T ss_pred             EEEEEEECCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCEEEEEEECCHHCCCCCEEEEEECCEEEEEEEECCCCC
T ss_conf             79989975887777788858845797767999605625667970699995503316886899997885887899557984


Q ss_pred             C
Q ss_conf             9
Q gi|254780591|r  273 K  273 (273)
Q Consensus       273 ~  273 (273)
T Consensus       371 d  371 (379)
T COG0404         371 D  371 (379)
T ss_pred             C
T ss_conf             8