HHsearch alignment for GI: 254780591 and conserved domain: COG0404
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism].
Probab=100.00 E-value=1.3e-41 Score=262.06 Aligned_cols=270 Identities=17% Similarity=0.123 Sum_probs=202.7
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
T Consensus 51 fDvShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~rl~~d~f~lv~~a~~~~~~~~~l~~ 130 (379)
T COG0404 51 FDVSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYRLGEDRFFLVTNAATAEKDLAWLER 130 (379)
T ss_pred EECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCEEEEEECCCCHHHHHHHHHH
T ss_conf 86468569999898999999977056667677774887245879998874179997269869999476662889999987
Q ss_pred HH--HCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCH-----------HHHHHCCCCCCCCCH-------
Q ss_conf 21--000122356884369999718543222111234566--44410-----------122210135555796-------
Q gi|254780591|r 84 YK--LRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS--IADVL-----------LHRTWGHNEKIASDI------- 141 (273)
Q Consensus 84 ~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~------- 141 (273)
T Consensus 131 ~~~~~~~~v~~~~~t~~~~~lalqGPkAr~il~~~~~~~~~~~l~~~~~~~~~i~g~~~~~i~R~gyTGE~G~Ei~~p~~ 210 (379)
T COG0404 131 HQAGPDLDVTLTSVTEDLAVLALQGPKAREVLAKLVDGDLVEALPFFAFKEVTIGGGVPVRISRTGYTGELGFEIYVPAE 210 (379)
T ss_pred HHCCCCCCEEEEECCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCEEEEEECHH
T ss_conf 51368860597653554899998786789999874465532358835788877057734999946634787589973689
Q ss_pred ---HHHHHHHHH-----------------HHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---788888875-----------------201334565432212331001112201331475213310132100124443
Q gi|254780591|r 142 ---KTYHELRIN-----------------HGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIR 201 (273)
Q Consensus 142 ---~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~ 201 (273)
T Consensus 211 ~a~~vw~aL~~aG~~~g~~P~Gl~A~dtLRlE~g~~l~g~d~~~~~~P~eagl~~~v~~~k~dFiGk~al~~~k~~g~~r 290 (379)
T COG0404 211 DAAAVWDALLEAGEKFGVKPCGLGARDTLRLEAGLRLYGQDLDETITPLEAGLGWAVKLDKDDFIGKAALLREKAKGVRR 290 (379)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCEEECCCCCCCCCHHHHHHHHHCCCCE
T ss_conf 99999999997200238557600356675664576432643599989755676208227876776899999667417761
Q ss_pred EEEEEEECCCC-CCCCCCEEE-ECCEE-EEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 47887401345-667898872-46779-6799983478------336899813103665678648868889999748876
Q gi|254780591|r 202 KRPMIITGTDD-LPPSGSPIL-TDDIE-IGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWY 272 (273)
Q Consensus 202 ~~~~~~~~~~~-~~~~g~~i~-~~g~~-VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~ 272 (273)
T Consensus 291 ~lVgl~~~~~~~~~~~g~~v~~~~g~~~vG~VTSg~~Sptlg~~IAla~v~~~~~~~G~~~~v~i~~~~~~a~V~~~pf~ 370 (379)
T COG0404 291 KLVGLKLDDKGPVLRGGEPVLDADGEVEVGEVTSGTFSPTLGKSIALAYVDSDYAKPGTELEVEIRGKRVPARVVKPPFY 370 (379)
T ss_pred EEEEEEECCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCEEEEEEECCHHCCCCCEEEEEECCEEEEEEEECCCCC
T ss_conf 79989975887777788858845797767999605625667970699995503316886899997885887899557984
Q ss_pred C
Q ss_conf 9
Q gi|254780591|r 273 K 273 (273)
Q Consensus 273 ~ 273 (273)
T Consensus 371 d 371 (379)
T COG0404 371 D 371 (379)
T ss_pred C
T ss_conf 8