HHsearch alignment for GI: 254780591 and conserved domain: TIGR01372
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=100.00 E-value=6.5e-35 Score=222.87 Aligned_cols=266 Identities=15% Similarity=0.067 Sum_probs=196.8
Q ss_pred CCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHH----
Q ss_conf 7940799987587878632132673108998268999997999889989999704555200003333345677764----
Q gi|254780591|r 7 SNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLL---- 82 (273)
Q Consensus 7 ~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~---- 82 (273)
T Consensus 686 STLGKIev~GPDAaeFLnRvYtN~~~kL~vGkaRYGlMLreDG~vfDDGvt~RL~EdrF~mTTTTg~Aa~Vl~~LE~~~Q 765 (1026)
T TIGR01372 686 STLGKIEVVGPDAAEFLNRVYTNAFSKLKVGKARYGLMLREDGMVFDDGVTSRLAEDRFLMTTTTGGAARVLQHLEEYLQ 765 (1026)
T ss_pred CCCCCEEEECCCHHHHCCHHHCCCCCCCCCCCEECCCCCCCCCEEECCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHH
T ss_conf 34660430078779862511128777878864302641246855871866887437873787244025689999898751
Q ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCHH---------------HHHH----------CCCCC
Q ss_conf 321000122356884369999718543222111234-566444101---------------2221----------01355
Q gi|254780591|r 83 FYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDE-RFSIADVLL---------------HRTW----------GHNEK 136 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~---------------~~~~----------~~~~~ 136 (273)
T Consensus 766 ~~wP~L~V~lTSvTdqwAt~a~~GPkaR~lLa~~v~G~dlsneaFPfM~~~eg~~~GGq~~aRlfRiSFsGElayEv~vp 845 (1026)
T TIGR01372 766 TEWPELDVYLTSVTDQWATLAVSGPKARDLLAELVDGLDLSNEAFPFMSIKEGSLAGGQVPARLFRISFSGELAYEVNVP 845 (1026)
T ss_pred HCCCCCCEEEEECHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCEEEEEECC
T ss_conf 01786540787401345465216842689988535885356122774515631353682027899877405401575045
Q ss_pred CCCCHHHHH-----------------HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC-CCCCCCCCCCCCCC
Q ss_conf 557967888-----------------888752013345654322123310011122013314752-13310132100124
Q gi|254780591|r 137 IASDIKTYH-----------------ELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGC-YIGQEVVSRIQHRN 198 (273)
Q Consensus 137 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~-f~G~e~~~~~~~~~ 198 (273)
T Consensus 846 A~yG~~vw~~L~~AG~~fg~~pYGtEalhVLRaEKGfiivG~dtDGTvtP~Dlg~~w~vsk~K~dsFvG~R~~~Redl~~ 925 (1026)
T TIGR01372 846 ADYGEAVWEALMEAGQPFGITPYGTEALHVLRAEKGFIIVGQDTDGTVTPADLGLGWAVSKKKKDSFVGRRGLAREDLVA 925 (1026)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHCCCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCHHHHH
T ss_conf 04578999999984424686210422432662115637842588853107553788754466897431531257712332
Q ss_pred CCCEEEEEEE-CC-CCCCCCCCEEEECC--------EEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEE--EEC
Q ss_conf 4434788740-13-45667898872467--------796799983478------336899813103665678648--868
Q gi|254780591|r 199 IIRKRPMIIT-GT-DDLPPSGSPILTDD--------IEIGTLGVVVGK------KALAIARIDKVDHAIKKGMAL--TVH 260 (273)
Q Consensus 199 ~~~~~~~~~~-~~-~~~~~~g~~i~~~g--------~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l--~~~ 260 (273)
T Consensus 926 ~dR~~LVGl~p~D~~~~L~~GAhiv~~~~~~~PGC~~~~GhVTSSy~SP~lG~~IaLALV~gG~~R~Ge~v~v~~~~Rgr 1005 (1026)
T TIGR01372 926 EDRKQLVGLLPLDPQRRLEEGAHIVADGAEATPGCMKMQGHVTSSYFSPALGRTIALALVKGGRARHGETVYVPDALRGR 1005 (1026)
T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHCHHHCCCCEEEEECCCCCC
T ss_conf 58844345774788863754211112436688787785032873551423277110441222032478789950178885
Q ss_pred CEEEEEECCCCC
Q ss_conf 889999748876
Q gi|254780591|r 261 GVRVKASFPHWY 272 (273)
Q Consensus 261 ~~~~~i~~P~w~ 272 (273)
T Consensus 1006 ~~~v~i~~~Vff 1017 (1026)
T TIGR01372 1006 FIAVEICSPVFF 1017 (1026)
T ss_pred EEEEEEECCEEE
T ss_conf 366898134417