HHsearch results for GI: 254780591 and protein with PDBid: 1yx2_A
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-42 Score=265.25 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=193.9
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++||||++|++|++.||+|||++|+|++|++|+|++++.|+++.+.........++..
T Consensus 50 ~D~S~~~~i~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~l~~~G~ii~D~~v~~~~e~~~~l~~~~~~~~~~~~~l~~ 129 (365)
T 1yx2_A 50 FDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKE 129 (365)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHHHHCCEECCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHH
T ss_conf 97897189999879999999876141442137984898887658897765379998047860676145667767788763
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-------------------------CCCCHHHHHH-------
Q ss_conf 21000122356884369999718543222111234566-------------------------4441012221-------
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS-------------------------IADVLLHRTW------- 131 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~------- 131 (273)
.... .+.+.+.++.+..++++||+++........... ..++..+.++
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~l~GP~s~~~l~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~R~g~tGe~G~el~~~~~~~~ 208 (365)
T 1yx2_A 130 HAAG-DVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAM 208 (365)
T ss_dssp TCCS-SCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHH
T ss_pred CCCC-CCEEEECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECCCHHHHH
T ss_conf 3378-609998768788898787660332012467410123541202578988918999946767887347416789999
Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf ----------013555579678888887520133456543221233100111220133147-521331013210012444
Q gi|254780591|r 132 ----------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK-GCYIGQEVVSRIQHRNII 200 (273)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~f~G~e~~~~~~~~~~~ 200 (273)
........+...++..+.+.+.+.+..+... ...+....+.+.++..| +||+|||++.+++..+..
T Consensus 209 ~l~~~l~~aG~~~g~~p~G~~a~~~lRiE~g~~~~g~D~~~---~~~P~EagL~~~i~~~k~~~fiG~eal~~~~~~g~~ 285 (365)
T 1yx2_A 209 HIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTR---DITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAK 285 (365)
T ss_dssp HHHHHHHHHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBST---TCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHHCCS
T ss_pred HHHHHHHHCCHHHCCEECCHHHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999996127519988668787577886488766865778---899678788735765786552208999999864997
Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCC
Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688--89999748876
Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWY 272 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~ 272 (273)
++++++....+..+..|++|+.+|+.||.|||+++| +||||++.++...+.. +++.+.+ ++++|+++|||
T Consensus 286 rrlvgl~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~lg~~Iala~v~~~~a~~g~~--l~v~~~g~~~~a~V~~~Pfy 363 (365)
T 1yx2_A 286 RKLVGLEMIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTV--VDVEIRKKLVKAKVVKTPFY 363 (365)
T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCE--EEEEETTEEEEEEEECCCC-
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECHHCCEEEEEEEECHHHCCCCCE--EEEEECCEEEEEEEECCCCC
T ss_conf 5999999568878899997988990899941588973059289999998021589988--99999999999999888886
Q ss_pred C
Q ss_conf 9
Q gi|254780591|r 273 K 273 (273)
Q Consensus 273 ~ 273 (273)
|
T Consensus 364 ~ 364 (365)
T 1yx2_A 364 K 364 (365)
T ss_dssp -
T ss_pred C
T ss_conf 7