HHsearch results for GI: 254780591 and protein with PDBid: 2gag_A
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=4.2e-40 Score=251.88 Aligned_cols=265 Identities=17% Similarity=0.098 Sum_probs=187.0
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
|=+|+++.|+|+|+||.+|||+++|||+++|++|+++||+|||++|+|++|++|+|+++++|+++.++........++..
T Consensus 627 ~D~S~~g~i~v~G~da~~fL~~~~t~~~~~l~~g~~~y~~~l~~~G~i~dD~~v~r~~e~~~~~~~~~~~~~~~~~~~~~ 706 (965)
T 2gag_A 627 LDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEE 706 (965)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred ECCCCEEEEEEEECHHHHHHHHHHHCCHHCCCCCCEEEEEEECCCCEEEEECEEEEECCCEEEEEECCHHHHHHHHHHHH
T ss_conf 42575089999815099999876310121179984446555517967987130112034225886311147777789999
Q ss_pred ----HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC----------------------------CCCCCCHHHHHH
Q ss_conf ----210001223568843699997185432221112345----------------------------664441012221
Q gi|254780591|r 84 ----YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDER----------------------------FSIADVLLHRTW 131 (273)
Q Consensus 84 ----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 131 (273)
......+.+.+.++.+..++++||+++..+..+... ....+++.+.++
T Consensus 707 ~~~~~~~~~~v~~~~~t~~~~~~~~~GP~s~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~tGE~G~Ei~ 786 (965)
T 2gag_A 707 WLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIA 786 (965)
T ss_dssp HHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSCEEEEE
T ss_pred HHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHCEECCEEEEEECCCCEEEEEECCCCCCCEEEEE
T ss_conf 98641667750699975122431112256999999822576755101301003699976883799994466789869999
Q ss_pred -----------------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf -----------------013555579678888887520133456543221233100111220133147521331013210
Q gi|254780591|r 132 -----------------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRI 194 (273)
Q Consensus 132 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~ 194 (273)
......+.+...++..+.+.+...+.. +......+....+.|.++++|+ |+||++++++
T Consensus 787 ~~~~~~~~lw~~l~~~G~~~~~~p~G~~a~~~lRiE~G~~~~G~---d~~~~~tP~eagl~~~v~~~k~-fiGk~al~~~ 862 (965)
T 2gag_A 787 VPAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQ---DTDGTVTPQDAGMEWVVSKLKD-FIGNRSYSRA 862 (965)
T ss_dssp EEGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCCTTT---TCCSSCCTTTTTCGGGSCSSSC-CTTGGGGGSH
T ss_pred ECHHHHHHHHHHHHHCCHHCCCEECCHHHHHHHHHHCCCCCCCC---CCCCCCCHHHCCCHHHHCCCCC-CCCHHHHHHH
T ss_conf 74999999999999738021998757989999999749885532---2599999678882465489999-7789999989
Q ss_pred CCCCCCCEE-EEEEECC-CCCCCCCCEEEECC--------EEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEE
Q ss_conf 012444347-8874013-45667898872467--------796799983478------3368998131036656786488
Q gi|254780591|r 195 QHRNIIRKR-PMIITGT-DDLPPSGSPILTDD--------IEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALT 258 (273)
Q Consensus 195 ~~~~~~~~~-~~~~~~~-~~~~~~g~~i~~~g--------~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~ 258 (273)
+..+..+++ +++.... ....+.+..++.++ ++||+|||+++| +||||++.++...+....+++.
T Consensus 863 ~~~~~~~~~lv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vG~vTS~~~sp~l~~~Iala~v~~~~~~~g~~~~v~~~ 942 (965)
T 2gag_A 863 DNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVG 942 (965)
T ss_dssp HHHCSSCEEEEEEEESSTTCCCCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGGCTTCEEEEEET
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 86399853999999837876688997457588622578877369998665750159379999988543689988999989
Q ss_pred ECCEEEEEECCCCC
Q ss_conf 68889999748876
Q gi|254780591|r 259 VHGVRVKASFPHWY 272 (273)
Q Consensus 259 ~~~~~~~i~~P~w~ 272 (273)
.+..+++|++||||
T Consensus 943 g~~~~a~v~~~pf~ 956 (965)
T 2gag_A 943 DQLVDVVVSETVLY 956 (965)
T ss_dssp TEEEEEEEECSCCS
T ss_pred CEEEEEEEECCCCC
T ss_conf 99999999488999