Query gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs 105 out of 5937
Neff 10.5
Searched_HMMs 23785
Date Tue May 31 20:59:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780591.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yx2_A Aminomethyltransferase; 100.0 2.2E-42 0 265.2 21.9 264 4-273 50-364 (365)
2 1v5v_A Aminomethyltransferase; 100.0 5.2E-42 0 263.0 21.9 269 4-273 50-391 (401)
3 1vly_A SPOT PR51, unknown prot 100.0 1.1E-40 4.2E-45 255.4 20.6 265 3-272 33-335 (338)
4 1pj5_A N,N-dimethylglycine oxi 100.0 7.1E-41 2.8E-45 256.4 18.4 265 4-273 503-822 (830)
5 3gir_A Aminomethyltransferase; 100.0 2.6E-40 1.1E-44 253.1 19.0 265 4-273 79-387 (393)
6 2gag_A Heterotetrameric sarcos 100.0 4.2E-40 1.8E-44 251.9 19.2 265 4-272 627-956 (965)
7 1wos_A Aminomethyltransferase; 100.0 5.3E-40 2.2E-44 251.3 18.5 262 4-273 46-357 (364)
8 1wsr_A Aminomethyltransferase; 100.0 6E-39 2.5E-43 245.2 19.1 267 4-273 51-368 (375)
9 1vlo_A Aminomethyltransferase; 100.0 9.2E-39 3.9E-43 244.1 16.0 260 4-273 59-370 (381)
10 1x31_C Sarcosine oxidase gamma 98.7 3.1E-09 1.3E-13 71.7 0.9 113 4-125 33-145 (206)
11 2gag_C Heterotetrameric sarcos 98.3 5.7E-08 2.4E-12 64.3 0.4 112 4-124 35-146 (210)
12 1x31_C Sarcosine oxidase gamma 96.7 0.0098 4.1E-07 33.7 8.3 76 6-87 115-193 (206)
13 2gag_C Heterotetrameric sarcos 96.3 0.022 9.2E-07 31.7 8.3 72 8-85 120-193 (210)
14 3gee_A MNME, tRNA modification 95.6 0.058 2.4E-06 29.2 7.8 57 8-65 29-91 (476)
15 3geh_A MNME, tRNA modification 95.3 0.035 1.5E-06 30.5 5.9 58 8-65 23-83 (462)
16 1xzp_A Probable tRNA modificat 94.2 0.067 2.8E-06 28.9 5.1 56 8-65 47-103 (482)
No 1
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-42 Score=265.25 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=193.9
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++||||++|++|++.||+|||++|+|++|++|+|++++.|+++.+.........++..
T Consensus 50 ~D~S~~~~i~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~l~~~G~ii~D~~v~~~~e~~~~l~~~~~~~~~~~~~l~~ 129 (365)
T 1yx2_A 50 FDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKE 129 (365)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHHHHCCEECCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHH
T ss_conf 97897189999879999999876141442137984898887658897765379998047860676145667767788763
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-------------------------CCCCHHHHHH-------
Q ss_conf 21000122356884369999718543222111234566-------------------------4441012221-------
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFS-------------------------IADVLLHRTW------- 131 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~------- 131 (273)
.... .+.+.+.++.+..++++||+++........... ..++..+.++
T Consensus 130 ~~~~-~~~~~~~~~~~~~~~l~GP~s~~~l~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~R~g~tGe~G~el~~~~~~~~ 208 (365)
T 1yx2_A 130 HAAG-DVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSALKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAM 208 (365)
T ss_dssp TCCS-SCEEEECTTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTBEEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHH
T ss_pred CCCC-CCEEEECCCCEEEEEEECCCHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECCCHHHHH
T ss_conf 3378-609998768788898787660332012467410123541202578988918999946767887347416789999
Q ss_pred ----------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC-CCCCCCCCCCCCCCCCCC
Q ss_conf ----------013555579678888887520133456543221233100111220133147-521331013210012444
Q gi|254780591|r 132 ----------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK-GCYIGQEVVSRIQHRNII 200 (273)
Q Consensus 132 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-~~f~G~e~~~~~~~~~~~ 200 (273)
........+...++..+.+.+.+.+..+... ...+....+.+.++..| +||+|||++.+++..+..
T Consensus 209 ~l~~~l~~aG~~~g~~p~G~~a~~~lRiE~g~~~~g~D~~~---~~~P~EagL~~~i~~~k~~~fiG~eal~~~~~~g~~ 285 (365)
T 1yx2_A 209 HIWKKIIDAGDAYGLIPCGLGARDTLRFEANIPLYGQELTR---DITPIEAGIGFAVKHKKESDFFGKSVLSEQKENGAK 285 (365)
T ss_dssp HHHHHHHHHHGGGTEEEECHHHHHHHHHHTTCCCBTTTBST---TCCTTTTTCGGGCCTTCSSCCTTHHHHHHHHHHCCS
T ss_pred HHHHHHHHCCHHHCCEECCHHHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999996127519988668787577886488766865778---899678788735765786552208999999864997
Q ss_pred CEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCCC
Q ss_conf 347887401345667898872467796799983478------3368998131036656786488688--89999748876
Q gi|254780591|r 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHWY 272 (273)
Q Consensus 201 ~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w~ 272 (273)
++++++....+..+..|++|+.+|+.||.|||+++| +||||++.++...+.. +++.+.+ ++++|+++|||
T Consensus 286 rrlvgl~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~lg~~Iala~v~~~~a~~g~~--l~v~~~g~~~~a~V~~~Pfy 363 (365)
T 1yx2_A 286 RKLVGLEMIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTV--VDVEIRKKLVKAKVVKTPFY 363 (365)
T ss_dssp EEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGGGCSTTCE--EEEEETTEEEEEEEECCCC-
T ss_pred EEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECHHCCEEEEEEEECHHHCCCCCE--EEEEECCEEEEEEEECCCCC
T ss_conf 5999999568878899997988990899941588973059289999998021589988--99999999999999888886
Q ss_pred C
Q ss_conf 9
Q gi|254780591|r 273 K 273 (273)
Q Consensus 273 ~ 273 (273)
|
T Consensus 364 ~ 364 (365)
T 1yx2_A 364 K 364 (365)
T ss_dssp -
T ss_pred C
T ss_conf 7
No 2
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=100.00 E-value=5.2e-42 Score=263.02 Aligned_cols=269 Identities=14% Similarity=0.151 Sum_probs=196.8
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++..+........+...
T Consensus 50 ~D~S~~~ki~I~G~Da~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 129 (401)
T 1v5v_A 50 FDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTY 129 (401)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEECCCCHHHHHHHHHHHH
T ss_conf 97898489999879999999875255777688984899989879998899899997313110102460244443344332
Q ss_pred ------HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHHHC-
Q ss_conf ------2100012235688436999971854322211123------------------------456644410122210-
Q gi|254780591|r 84 ------YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRTWG- 132 (273)
Q Consensus 84 ------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~- 132 (273)
......+.+.+.+.++..+.++||++........ .+....++..+.++.
T Consensus 130 ~~~~~~~~~~~~v~i~d~t~~~~~l~vqGP~s~~~l~~l~~~~~~~~~~~~~~~~~~~g~~v~~~R~g~tGe~G~Ei~~~ 209 (401)
T 1v5v_A 130 LKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIE 209 (401)
T ss_dssp HHHHHHTTSCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEE
T ss_pred HHHHHHCCCCCCEEEEECCCCCEEEEECCCCCHHCCCHHCCCCHHCCCCCEEEEEECCCEEEEEEECCCCCCCEEEEEEE
T ss_conf 23322114678608997546715522037742100100000200002211023442275269999504678844999985
Q ss_pred ------------------------------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCCCCCE
Q ss_conf ------------------------------135555796788888875201334565432212------33100111220
Q gi|254780591|r 133 ------------------------------HNEKIASDIKTYHELRINHGIVDPNTDFLPSTI------FPHDALMDLLN 176 (273)
Q Consensus 133 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 176 (273)
.......+..+++..+.+.+.+.+..+...... ...+....+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~lw~~L~~aG~~~gl~p~G~~A~~~lRiE~G~~~~g~D~~~~~~~~~~~~~~tP~EagL~~ 289 (401)
T 1v5v_A 210 DANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEF 289 (401)
T ss_dssp CCCTTCSSGGGCCCCHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGG
T ss_pred CCCCCCCHHHHCCCHHHHHHHHHHHHHCCHHCCCEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCHHH
T ss_conf 64333201220245155999999999727220988756778889888608644343355211344466766856715034
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCC
Q ss_conf 133147521331013210012444347887401345667898872467796799983478------33689981310366
Q gi|254780591|r 177 GISLTKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHA 250 (273)
Q Consensus 177 ~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~ 250 (273)
.++++|+ |+|||++++++..+..++++++.......++.|++|+.+|+.||.|||+++| +||||++.++...+
T Consensus 290 ~v~~~K~-fiGkeal~~~~~~g~~~~lv~l~~~~~~~p~~g~~v~~~g~~VG~vTS~~~sp~l~~~Iala~v~~~~~~~g 368 (401)
T 1v5v_A 290 AIYWDKD-FIGKDALLKQKERGVGRKLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEEYAKPG 368 (401)
T ss_dssp GCCTTSC-CTTHHHHHHHHHHCCCEEEEEEEESSSCCCCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGGGCSTT
T ss_pred HHCCCCC-CCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCEEEEEECCEEECHHCCCEEEEEEECHHHCCCC
T ss_conf 4215778-776589998875298714899997678789999979779928989221768520592799999887775999
Q ss_pred CCCCCEEEECCEEEEEECCCCCC
Q ss_conf 56786488688899997488769
Q gi|254780591|r 251 IKKGMALTVHGVRVKASFPHWYK 273 (273)
Q Consensus 251 ~~~~~~l~~~~~~~~i~~P~w~~ 273 (273)
....+.+.++..+++|.++|||.
T Consensus 369 ~~~~v~~~g~~~~a~v~~~pf~d 391 (401)
T 1v5v_A 369 IEIEVEIRGQRKKAVTVTPPFYD 391 (401)
T ss_dssp CEEEEEETTEEEEEEEECSCSSC
T ss_pred CEEEEEECCEEEEEEEECCCCCC
T ss_conf 88999999969999997889818
No 3
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898, unknown protein from 2D-PAGE (SPOT PR51), structural genomics, JCSG; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=100.00 E-value=1.1e-40 Score=255.39 Aligned_cols=265 Identities=16% Similarity=0.176 Sum_probs=186.0
Q ss_pred EEECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 17617940799987587878632132673108998268999997999889989999704555200003333345677764
Q gi|254780591|r 3 SVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLL 82 (273)
Q Consensus 3 ~~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (273)
.+-|++|++|+|+|+||.+|||+|+||||+++++|+++||++||++|+|++|++|+|.+++.++++..+........+.+
T Consensus 33 l~~L~~~~~i~v~G~Da~~fLq~l~T~di~~l~~g~~~yt~~ln~~Grvi~d~~v~~~~d~~~l~~~~~~~~~~~~~l~~ 112 (338)
T 1vly_A 33 LMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKK 112 (338)
T ss_dssp EEECTTEEEEEEESTTHHHHHHTTBSSCGGGCCTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEHHHHHHHHHHHHT
T ss_pred EEECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCEEEEECHHHHHHHHHHHHH
T ss_conf 88769836999988999999615554162437999899989988993499999999937965998446777888888877
Q ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH-----------------HHH----------HH--CC
Q ss_conf 32100012235688436999971854322211123456644410-----------------122----------21--01
Q gi|254780591|r 83 FYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVL-----------------LHR----------TW--GH 133 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~~----------~~--~~ 133 (273)
+. ...++.+.+. .....+.++||+++................ ... .+ ..
T Consensus 113 ~~-~~~~V~i~~~-~~~~~~~l~Gp~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 190 (338)
T 1vly_A 113 YA-VFSKVTIAPD-DERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAERFLIVTDEATANMLTDKLR 190 (338)
T ss_dssp TC-SSSSCEEEEE-CSSEEEEEESTTHHHHHHTTSSCCCBTTBCEEEETTEEEEEECSSSCEEEEEECHHHHHHHHHHHB
T ss_pred HC-CCCEEEEECC-CCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEECCCEEEEECCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 33-4753676214-435799961731799997614345544542540485489953688875365078899999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEE-ECCCC
Q ss_conf 35555796788888875201334565432212331001112201331475213310132100124443478874-01345
Q gi|254780591|r 134 NEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKRPMII-TGTDD 212 (273)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~~~~~~-~~~~~ 212 (273)
......+...|+..+.+.+.+........ ...+........+.++++||||+|||+++|++++|..+|+++.. ...+.
T Consensus 191 ~~~~~~g~~~~~~~Rie~g~p~~~~d~~~-~~~P~e~~l~~~~~Vs~~KGcYiGQE~vaR~~~~G~~krrl~~l~~~~~~ 269 (338)
T 1vly_A 191 GEAELNNSQQWLALNIEAGFPVIDAANSG-QFIPQATNLQALGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASR 269 (338)
T ss_dssp TTBEEECHHHHHHHHHHHTCCCCCGGGTT-SCCGGGGTGGGTTCCCSSSCCCTTHHHHHHTTSTTSCCEEEEEEEECCSS
T ss_pred HCCCCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf 21332105678899998363113643466-77840268201027557777604599999999739982699999976887
Q ss_pred CCCCCCEEEE----CCEEEEEEEEEEC----CEEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 6678988724----6779679998347----8336899813103665678648868889999748876
Q gi|254780591|r 213 LPPSGSPILT----DDIEIGTLGVVVG----KKALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWY 272 (273)
Q Consensus 213 ~~~~g~~i~~----~g~~VG~vtS~~~----~~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~ 272 (273)
.+..|++++. +|+.||.|||+++ .+++|+++.+....+. .+.+..++.+++|...|++
T Consensus 270 ~~~~G~~l~~~~~~~g~~VG~VtS~~~~~~~~~~la~v~~~~~~~g~--~l~v~~~~~~l~i~~lPy~ 335 (338)
T 1vly_A 270 LPEAGEDLELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPDS--IFRVRDDANTLHIEPLPYS 335 (338)
T ss_dssp CCCTTCCEEEEETTEEEEECEEEEEEECTTSCEEEEEEEETTCCTTC--CEESTTCSSCEEEECCSSC
T ss_pred CCCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEEEEEHHCCCCCC--EEEECCCCCEEEEECCCCC
T ss_conf 89995988861388992799999976889987999999820179998--8997389968999779988
No 4
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=100.00 E-value=7.1e-41 Score=256.40 Aligned_cols=265 Identities=13% Similarity=0.093 Sum_probs=190.3
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+|+||.+|||+++|||++. .+|+++|++|||++|++++|++|+|++++.|+++.++........+...
T Consensus 503 ~D~S~~~~~~v~G~da~~~L~~~~~~~~~~-~~g~~~y~~~l~~~Ggi~~D~~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 581 (830)
T 1pj5_A 503 YDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAAR 581 (830)
T ss_dssp EECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHHHHCCCC-CCCCEEECCEECCCCCCCCCCEEEEECCCEEEEEECCCHHHHHHHHHHH
T ss_conf 846674348997476899865565303446-7785001110025786524624664023137998332105888887766
Q ss_pred HHHC-----CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC--------------------------CCHHHHHH-
Q ss_conf 2100-----012235688436999971854322211123456644--------------------------41012221-
Q gi|254780591|r 84 YKLR-----SNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIA--------------------------DVLLHRTW- 131 (273)
Q Consensus 84 ~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~- 131 (273)
.... ..+.+.+.++++..+++|||+|+..+..+...+... +++.+.++
T Consensus 582 ~~~~~~~~~~~v~i~~~t~~~~~lalqGP~s~~~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~R~g~tGE~G~Ei~~ 661 (830)
T 1pj5_A 582 HQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYT 661 (830)
T ss_dssp HHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEE
T ss_pred HHHHHCCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCEEEEC
T ss_conf 55541565433113304510557776483799999973023333201554302589999978655216535788537725
Q ss_pred ----------------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf ----------------0135555796788888875201334565432212331001112201331475213310132100
Q gi|254780591|r 132 ----------------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQ 195 (273)
Q Consensus 132 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~ 195 (273)
........+..+.+..+.+.+...+.. +......+....+.+.++++|+||+||+++.+++
T Consensus 662 ~~~~~~~l~~~l~~aG~~~gi~p~G~~a~~~lRlE~G~~~~g~---d~~~~~~P~eagl~~~v~~~k~~FiGk~al~~~~ 738 (830)
T 1pj5_A 662 SADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGT---DMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRT 738 (830)
T ss_dssp EHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTT---TBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHCCCCCCCC---CCCCCCCHHHCCCHHHHCCCCCCCCCHHHHHHHH
T ss_conf 8899999999999768230998647567667999748875576---6899989789696022279999957899999998
Q ss_pred CCCCCCEEEEEEECC-CCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEEC
Q ss_conf 124443478874013-45667898872467796799983478------33689981310366567864886888999974
Q gi|254780591|r 196 HRNIIRKRPMIITGT-DDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASF 268 (273)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~ 268 (273)
..+..++++++.... +..+..+++|+.+|+.||+|||+++| +||||++.++. .+....+++..+..+++|++
T Consensus 739 ~~g~~~~lv~l~~~~~~~~~~~~~~i~~~~~~vG~vTS~~~sp~l~~~iala~v~~~~~-~g~~~~v~~~g~~~~a~v~~ 817 (830)
T 1pj5_A 739 EEASARRLRCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGTVS-VGDSVDIEYFGRRITATVTE 817 (830)
T ss_dssp STTCSEEEEEEEETTSCCCCCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEETTCC-TTCEEEEEETTEEEEEEEEC
T ss_pred HCCCCEEEEEEEECCCCCCCCCCCEEEECCCEEEECCEEEECHHCCCEEEEEEECCCCC-CCCEEEEEECCEEEEEEEEC
T ss_conf 65997399999985898578999848539942899233423241390799999677758-99989999999799999966
Q ss_pred CCCCC
Q ss_conf 88769
Q gi|254780591|r 269 PHWYK 273 (273)
Q Consensus 269 P~w~~ 273 (273)
+|||.
T Consensus 818 ~pf~d 822 (830)
T 1pj5_A 818 DPLYD 822 (830)
T ss_dssp SCSSC
T ss_pred CCCCC
T ss_conf 79888
No 5
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=100.00 E-value=2.6e-40 Score=253.14 Aligned_cols=265 Identities=15% Similarity=0.126 Sum_probs=190.7
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+||||.+|||+++|||++++++|+++|++|||++|+|++|++|+|.+++.|+++.++........+...
T Consensus 79 ~D~S~~~~i~V~G~Da~~fL~~l~t~dv~~l~~g~~~y~~~ln~~G~i~~D~~v~~~~~d~~~l~~~~~~~~~~~~~~~~ 158 (393)
T 3gir_A 79 FDISHMKLIAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEK 158 (393)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHSSSCTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCHHHHHHHHCC
T ss_conf 97898589999899999997233575664356796688768869998899999997266302576411012455554202
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC--------------------CCCCCCCCHHHH--------------
Q ss_conf 2100012235688436999971854322211123--------------------456644410122--------------
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID--------------------ERFSIADVLLHR-------------- 129 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~~~~~~~-------------- 129 (273)
... ++.+.+.++++..++++||+++....... .+....++..+.
T Consensus 159 ~~~--~~~~~~~~~~~~~i~l~GP~s~~vl~~~~~~~~~~~~~~~~~~~~~v~i~R~g~tGE~G~Ei~~~~~~~~~l~~~ 236 (393)
T 3gir_A 159 RAF--GFECQVIALERVLLALQGPQAAAVLADAGLPGNELLFMQGFEPQQDWFITRSGYTGEDGFEIALPIGCARALAEK 236 (393)
T ss_dssp HTT--TSSCEEEECCCEEEEEESTTHHHHHHHTTCCCTTCCTTBEECSSTTCEEESCCSSSSSEEEEEECHHHHHHHHHH
T ss_pred CCC--CCEEEEECCCHHCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 367--876999426411010558378997553278611111000345775389992587887748996088999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE---ECCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 2101355557967888888752013345654322123310011122013---3147521331013210012444347887
Q gi|254780591|r 130 TWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGI---SLTKGCYIGQEVVSRIQHRNIIRKRPMI 206 (273)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~f~G~e~~~~~~~~~~~~~~~~~ 206 (273)
+.........+..+++..+.+.+.+.+..+..... .+....+.+.+ ...|+||+||+++.+.+..+..++++++
T Consensus 237 L~~~~~~~~~G~~A~~~LRiEaG~~~~g~dl~~~~---tP~eagL~~~v~~~~~~k~~f~Gkeal~~~~~~g~~~~lvg~ 313 (393)
T 3gir_A 237 LLGDSRVEWVGLAARDSLRLEAGLCLHGNDITPDT---TPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGL 313 (393)
T ss_dssp HHTSTTEEECCHHHHHHHHHHTTCCCBTTTBCTTC---CTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC---CHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98554875026444233488649865466677878---821344433221353422020068999998752874378998
Q ss_pred EECCCCCCCCCCEEE-ECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCCC
Q ss_conf 401345667898872-467796799983478------3368998131036656786488688899997488769
Q gi|254780591|r 207 ITGTDDLPPSGSPIL-TDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 (273)
Q Consensus 207 ~~~~~~~~~~g~~i~-~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~~ 273 (273)
....+.+++.+..++ .+|+.||+|||+++| +||||++.++...+.+..+++..+-++++|+++||++
T Consensus 314 ~~~~~~~~~~g~~v~~~~g~~VG~VTS~~~Sp~l~k~Ialayv~~~~a~~G~~v~V~i~g~~~~a~V~~~PF~d 387 (393)
T 3gir_A 314 KPQTRQPIRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVE 387 (393)
T ss_dssp EESSSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSC
T ss_pred EECCCCCCCCCCEEECCCCCEEEEECCEEECHHCCEEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCCC
T ss_conf 74688767899988848991898907076742049189999999778489998999999989999997789889
No 6
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=100.00 E-value=4.2e-40 Score=251.88 Aligned_cols=265 Identities=17% Similarity=0.098 Sum_probs=187.0
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
|=+|+++.|+|+|+||.+|||+++|||+++|++|+++||+|||++|+|++|++|+|+++++|+++.++........++..
T Consensus 627 ~D~S~~g~i~v~G~da~~fL~~~~t~~~~~l~~g~~~y~~~l~~~G~i~dD~~v~r~~e~~~~~~~~~~~~~~~~~~~~~ 706 (965)
T 2gag_A 627 LDATTLGKIEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTTGGAADVLDWLEE 706 (965)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred ECCCCEEEEEEEECHHHHHHHHHHHCCHHCCCCCCEEEEEEECCCCEEEEECEEEEECCCEEEEEECCHHHHHHHHHHHH
T ss_conf 42575089999815099999876310121179984446555517967987130112034225886311147777789999
Q ss_pred ----HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC----------------------------CCCCCCHHHHHH
Q ss_conf ----210001223568843699997185432221112345----------------------------664441012221
Q gi|254780591|r 84 ----YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDER----------------------------FSIADVLLHRTW 131 (273)
Q Consensus 84 ----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~ 131 (273)
......+.+.+.++.+..++++||+++..+..+... ....+++.+.++
T Consensus 707 ~~~~~~~~~~v~~~~~t~~~~~~~~~GP~s~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~tGE~G~Ei~ 786 (965)
T 2gag_A 707 WLQTEWPDLDVTCTSVTEQLATVAVVGPRSRDVIAKLASTVDVSNEGFKFMAFKDVVLDSGIEARISRISFSGELAFEIA 786 (965)
T ss_dssp HHHHTCTTSCCEEEECTTTEEEEEEESTTHHHHHHHHCTTSCCSTTTSCTTBEEEEECTTSCEEEEECCCSSSSCEEEEE
T ss_pred HHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCHHHCEECCEEEEEECCCCEEEEEECCCCCCCEEEEE
T ss_conf 98641667750699975122431112256999999822576755101301003699976883799994466789869999
Q ss_pred -----------------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf -----------------013555579678888887520133456543221233100111220133147521331013210
Q gi|254780591|r 132 -----------------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRI 194 (273)
Q Consensus 132 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~ 194 (273)
......+.+...++..+.+.+...+.. +......+....+.|.++++|+ |+||++++++
T Consensus 787 ~~~~~~~~lw~~l~~~G~~~~~~p~G~~a~~~lRiE~G~~~~G~---d~~~~~tP~eagl~~~v~~~k~-fiGk~al~~~ 862 (965)
T 2gag_A 787 VPAWHGLRVWEDVYAAGEEFNITPYGTETMHVLRAEKGFIIVGQ---DTDGTVTPQDAGMEWVVSKLKD-FIGNRSYSRA 862 (965)
T ss_dssp EEGGGHHHHHHHHHHHHGGGTCEECCHHHHHHHHHHTTCCCTTT---TCCSSCCTTTTTCGGGSCSSSC-CTTGGGGGSH
T ss_pred ECHHHHHHHHHHHHHCCHHCCCEECCHHHHHHHHHHCCCCCCCC---CCCCCCCHHHCCCHHHHCCCCC-CCCHHHHHHH
T ss_conf 74999999999999738021998757989999999749885532---2599999678882465489999-7789999989
Q ss_pred CCCCCCCEE-EEEEECC-CCCCCCCCEEEECC--------EEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEE
Q ss_conf 012444347-8874013-45667898872467--------796799983478------3368998131036656786488
Q gi|254780591|r 195 QHRNIIRKR-PMIITGT-DDLPPSGSPILTDD--------IEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALT 258 (273)
Q Consensus 195 ~~~~~~~~~-~~~~~~~-~~~~~~g~~i~~~g--------~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~ 258 (273)
+..+..+++ +++.... ....+.+..++.++ ++||+|||+++| +||||++.++...+....+++.
T Consensus 863 ~~~~~~~~~lv~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vG~vTS~~~sp~l~~~Iala~v~~~~~~~g~~~~v~~~ 942 (965)
T 2gag_A 863 DNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVG 942 (965)
T ss_dssp HHHCSSCEEEEEEEESSTTCCCCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEEEETGGGCTTCEEEEEET
T ss_pred HHCCCCCEEEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEC
T ss_conf 86399853999999837876688997457588622578877369998665750159379999988543689988999989
Q ss_pred ECCEEEEEECCCCC
Q ss_conf 68889999748876
Q gi|254780591|r 259 VHGVRVKASFPHWY 272 (273)
Q Consensus 259 ~~~~~~~i~~P~w~ 272 (273)
.+..+++|++||||
T Consensus 943 g~~~~a~v~~~pf~ 956 (965)
T 2gag_A 943 DQLVDVVVSETVLY 956 (965)
T ss_dssp TEEEEEEEECSCCS
T ss_pred CEEEEEEEECCCCC
T ss_conf 99999999488999
No 7
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=100.00 E-value=5.3e-40 Score=251.31 Aligned_cols=262 Identities=14% Similarity=0.119 Sum_probs=191.0
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|+++.|+|+||||.+|||+++||||++|++|+++||+|||++|+|++|++|+|++++.|+++.++........++..
T Consensus 46 ~D~S~~~~i~v~G~Da~~fL~~l~t~di~~l~~g~~~yt~~l~~~G~i~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (364)
T 1wos_A 46 FDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKS 125 (364)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHT
T ss_pred EECCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 97898289999879999999875277660306996899999858998876678987403664333464320566654210
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC------------------------CCCCCHHHHHHC-------
Q ss_conf 2100012235688436999971854322211123456------------------------644410122210-------
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF------------------------SIADVLLHRTWG------- 132 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~------- 132 (273)
+....++.+.+.++.+..++++||+++.......... ...++..+.++.
T Consensus 126 ~~~~~~v~~~d~t~~~~~l~lqGP~s~~vl~~~~~~~~~~~~~~~~~~~~~~g~~~~i~R~g~tGe~G~Ei~~~~~~~~~ 205 (364)
T 1wos_A 126 HSKNFDVEVSNISDTTALIAFQGPKAQETLQELVEDGLEEIAYYSFRKSIVAGVETLVSRTGYTGEDGFELMLEAKNAPK 205 (364)
T ss_dssp TCTTSSCEEEECGGGEEEEEEESTTHHHHHGGGBSSCSTTSCTTBEEEEEETTEEEEEESCCSSSSSEEEEEEEGGGHHH
T ss_pred CCCCCCCCEEECCCCCEEEEEECCCHHHHHHHHCCCCHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCEEECCHHHHHH
T ss_conf 35455751057688816999877850555455234301231002320157438468997147679996154134777899
Q ss_pred ----------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ----------1355557967888888752013345654322123310011122013314752133101321001244434
Q gi|254780591|r 133 ----------HNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRK 202 (273)
Q Consensus 133 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~~~~~~~~ 202 (273)
.......+..+++..+.+.+.+.+..+. .....+......+.++++| +|+|++++.+.+.. ..++
T Consensus 206 l~~~l~~~g~~~g~~p~G~~A~~~lRiE~G~~~~g~D~---~~~~~P~E~gl~~~v~~~K-~f~Gk~a~~~~~~~-~~r~ 280 (364)
T 1wos_A 206 VWDALMNLLRKIDGRPAGLGARDVCRLEATYLLYGQDM---DENTNPFEVGLSWVVKLNK-DFVGKEALLKAKEK-VERK 280 (364)
T ss_dssp HHHHHHHHHHHHTCEECCHHHHHHHHHHTTCCCBTTTB---CTTSCGGGGTCGGGCCTTS-CCTTHHHHHHHHHT-CCEE
T ss_pred HHHHHHHHCHHCCCEEECCCCCHHHHHHCCCCCCCCCC---CCCCCHHHCCCCCEECCCC-CCCCCCCCCCCCCC-CCEE
T ss_conf 99999984553098585434262337752676567658---9999989969742253898-75755232000147-7515
Q ss_pred EEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEE-CC--EEEEEECCCCCC
Q ss_conf 7887401345667898872467796799983478------33689981310366567864886-88--899997488769
Q gi|254780591|r 203 RPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTV-HG--VRVKASFPHWYK 273 (273)
Q Consensus 203 ~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~-~~--~~~~i~~P~w~~ 273 (273)
++++.......++.|++|+.+|+.||+|||+++| +||||++.++. .+. .+.+.. ++ .+++|+++|||+
T Consensus 281 l~~l~~~~~~~~~~g~~i~~~g~~VG~vTS~~~Sp~l~~~Iala~v~~~~~-~g~--~~~v~~~~g~~~~a~V~~~Pf~d 357 (364)
T 1wos_A 281 LVALELSGKRIARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSKSVK-IGD--QLGVVFPGGKLVEALVVKKPFYR 357 (364)
T ss_dssp EEEEEESSSCCCCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEETTCC-TTC--EEEEEETTTEEEEEEEECSCSCC
T ss_pred EEEEEECCCCCCCCCCEEEECCEEEEEEEEEEECCCCCCEEEEEEECCCCC-CCC--EEEEEEECCEEEEEEEECCCCCC
T ss_conf 899841265346899868889908889623558531592899999895558-999--99999719949989996889869
No 8
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=100.00 E-value=6e-39 Score=245.16 Aligned_cols=267 Identities=10% Similarity=0.048 Sum_probs=186.9
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+=+|++++|+|+|+||.+|||+++|||++++++|+++||+|||++|+|++|++|+|++++.|+++.++........++..
T Consensus 51 ~D~S~~~~i~V~G~Da~~fL~~l~t~di~~l~~g~~~y~~~ln~~G~i~~D~~v~r~~~~~~~l~~~~~~~~~~~~~l~~ 130 (375)
T 1wsr_A 51 FDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQD 130 (375)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCCTTCCTTEEEEEEEECTTCCEEEEEEEEECTTSSEEEEECGGGHHHHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 96798489999858999999886145730047971799665058864898556432365037887130210034666544
Q ss_pred HHHCCCCC---CCCCCCCEEEEEECCCCCCCCCCCCCCC-------------------------CCCCCCHHH-------
Q ss_conf 21000122---3568843699997185432221112345-------------------------664441012-------
Q gi|254780591|r 84 YKLRSNVI---IEIQPINGVVLSWNQEHTFSNSSFIDER-------------------------FSIADVLLH------- 128 (273)
Q Consensus 84 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------------~~~~~~~~~------- 128 (273)
........ +.+.+.....++++||+++......... ....++..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~l~l~GP~s~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~r~g~tGe~g~ei~~~~~ 210 (375)
T 1wsr_A 131 KVRELQNQGRDVGLEVLDNALLALQGPTAAQVLQAGVADDLRKLPFMTSAVMEVFGVSGCRVTRCGYTGEDGVEISVPVA 210 (375)
T ss_dssp HHHHHHHTTCCCEEEECCCEEEEEESTTHHHHHHTTCSSCGGGCCTTBEEEEEETTEEEEEEESCCSSSSSEEEEEECHH
T ss_pred HHHHCCCCCCEEEEEECCEEEEEEECCCHHHHHHHCCCCHHHHCCCCEEHEEECCCCCCEEEEEECCCCCCEEEEEECHH
T ss_conf 45412576733667412448997048401355663053223305410000012058854799975257872148851577
Q ss_pred -------HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC---CCCCCCCCCCCCCCCC
Q ss_conf -------221013555579678888887520133456543221233100111220133147---5213310132100124
Q gi|254780591|r 129 -------RTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK---GCYIGQEVVSRIQHRN 198 (273)
Q Consensus 129 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k---~~f~G~e~~~~~~~~~ 198 (273)
...........+..+++..+.+.+.+.+..+..... .+......+.++..+ .+|.|++++.+....+
T Consensus 211 ~~~~~~~~l~~~~~~~~~G~~A~~~lRiEaG~~~~g~d~~~~~---~p~eagL~~~~~~~~~~~~~f~G~~al~~~~~~~ 287 (375)
T 1wsr_A 211 GAVHLATAILKNPEVKLAGLAARDSLRLEAGLCLYGNDIDEHT---TPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGR 287 (375)
T ss_dssp HHHHHHHHHHTSTTEEECCHHHHHHHHHHTTCCCBTTTBCTTC---CTTTTTCGGGSCHHHHHHTCSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCC---CHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 8799999998725545455245667888618463165548899---8421764235425746444727999999876259
Q ss_pred CCCEEEEEEECCCCCCCCCCEEEECCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECCEEEEEECCCCC
Q ss_conf 44347887401345667898872467796799983478------336899813103665678648868889999748876
Q gi|254780591|r 199 IIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHGVRVKASFPHWY 272 (273)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~g~~i~~~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~~~~~i~~P~w~ 272 (273)
..++.+++..+..+++..++.++.+|+.||.|||+++| +||||++.++...+....+++..+..+++|..+||+
T Consensus 288 ~~~~~v~l~~~~~~~~~~~~v~~~dg~~VG~VTS~~~Sp~l~k~Iala~v~~~~~~~G~~l~V~~~g~~~~a~V~~~PF~ 367 (375)
T 1wsr_A 288 VQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFV 367 (375)
T ss_dssp CSCEEEEEEESSSCCCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSS
T ss_pred CCEEEEEEECCCCCCCCCCCEEECCCEEEEEECEEEECHHCCEEEEEEEECHHHCCCCCEEEEEECCEEEEEEEECCCCC
T ss_conf 73489996325775579996694799189891618596552938999999977779998899999998999999489965
Q ss_pred C
Q ss_conf 9
Q gi|254780591|r 273 K 273 (273)
Q Consensus 273 ~ 273 (273)
.
T Consensus 368 p 368 (375)
T 1wsr_A 368 P 368 (375)
T ss_dssp C
T ss_pred C
T ss_conf 9
No 9
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=100.00 E-value=9.2e-39 Score=244.07 Aligned_cols=260 Identities=12% Similarity=0.088 Sum_probs=187.0
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHC-CCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 7617940799987587878632132673108-998268999997999889989999704555200003333345677764
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTL-PYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLL 82 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l-~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (273)
+=+|++++|+|+||||.+|||+++|||+++| ++|+++||+|||++|+|++|++|+|++++.|+++.++........|+.
T Consensus 59 ~D~S~~~~i~V~G~DA~~fL~~l~t~di~~l~~~G~~~yt~~ln~~G~i~~D~~v~r~~ed~~~l~~~~~~~~~~~~~l~ 138 (381)
T 1vlo_A 59 FDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWIT 138 (381)
T ss_dssp EECTTSEEEEEESTTHHHHHHHHBSSCGGGCCSTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred EECCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEECCCCCEEECCCCHHHHHHHHHH
T ss_conf 97897089999888999999876168855547898489832138998588835645412676322114220889999999
Q ss_pred HHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHHH-------
Q ss_conf 32100012235688436999971854322211123------------------------45664441012221-------
Q gi|254780591|r 83 FYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRTW------- 131 (273)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~------- 131 (273)
.+....+. +.+.++++..++++||+++....... .+....++..+.++
T Consensus 139 ~~~~~~~~-~~~~t~~~~~l~vqGP~s~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~i~R~~~tGe~G~Ei~~p~~~~~ 217 (381)
T 1vlo_A 139 QHAEPFGI-EITVRDDLSMIAVQGPNAQAKAATLFNDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAA 217 (381)
T ss_dssp HHHGGGTC-EEEECTTEEEEEEESTTHHHHHHTTCCHHHHHHHTTCCSSBEEEETTEEEECCCSSSSCEEEEEEEHHHHH
T ss_pred HHCCCCCE-EEEEECCEEEEEECCCCHHHHHHHHCCCHHHHHHHHCCCEEEECCCEEEEECCCCCCCCEEEEEECHHHHH
T ss_conf 72557607-99981474456521772055544312330332112112000241408999766878998899998589999
Q ss_pred ------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCCCCCCCCCCCCCEE
Q ss_conf ------013555579678888887520133456543221233100111220133147--521331013210012444347
Q gi|254780591|r 132 ------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTK--GCYIGQEVVSRIQHRNIIRKR 203 (273)
Q Consensus 132 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--~~f~G~e~~~~~~~~~~~~~~ 203 (273)
........+...++..+.+.+.+.+..+... ...+....+.+.++++| .||+||+++.+.+..+. +++
T Consensus 218 ~l~~~L~~~G~~p~G~~a~~~lRiE~G~~~~g~d~~~---~~~P~Eagl~~~v~~~k~~~~fiGkeal~~~~~~~~-~rl 293 (381)
T 1vlo_A 218 DFWRALVEAGVKPCGLGARDTLRLEAGMNLYGQEMDE---TISPLAANMGWTIAWEPADRDFIGREALEVQREHGT-EKL 293 (381)
T ss_dssp HHHHHHHHTTCEECCHHHHHHHHHHTTCCCBTTTBCT---TSCGGGTTCGGGCCCCSTTCCCTTHHHHHHHHHHCC-CEE
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC---CCCHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCC-CEE
T ss_conf 9999999669967187899999997786745543467---678312465546762135688508999999873898-279
Q ss_pred EEEEECCCCCCCCCCEEEE----CCEEEEEEEEEECC------EEEEEEEHHHCCCCCCCCCEEEECC--EEEEEECCCC
Q ss_conf 8874013456678988724----67796799983478------3368998131036656786488688--8999974887
Q gi|254780591|r 204 PMIITGTDDLPPSGSPILT----DDIEIGTLGVVVGK------KALAIARIDKVDHAIKKGMALTVHG--VRVKASFPHW 271 (273)
Q Consensus 204 ~~~~~~~~~~~~~g~~i~~----~g~~VG~vtS~~~~------~gla~i~~~~~~~~~~~~~~l~~~~--~~~~i~~P~w 271 (273)
+++....+..+..+.++.. +|+.||+|||+++| +||||++.++ ...+.+.+.+ .+++|++|||
T Consensus 294 vgl~~~~~~~~~~~~~v~~~~~~~g~~vG~VTS~~~Sp~lg~~Iala~v~~~~-----g~~~~v~i~g~~~~a~V~~~pF 368 (381)
T 1vlo_A 294 VGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI-----GETAIVQIRNREMPVKVTKPVF 368 (381)
T ss_dssp EEEEECSSSCCCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECTTC-----CSEEEEEETTEEEEEEEECSCC
T ss_pred EEEEECCCCCCCCCCCEEEECCCCCEEEEEEEEEEECHHCCCEEEEEEEECCC-----CCEEEEEECCEEEEEEEECCCC
T ss_conf 99995576556899847820367986688998888756209589999981455-----9979999999999999967981
Q ss_pred CC
Q ss_conf 69
Q gi|254780591|r 272 YK 273 (273)
Q Consensus 272 ~~ 273 (273)
.+
T Consensus 369 ~~ 370 (381)
T 1vlo_A 369 VR 370 (381)
T ss_dssp EE
T ss_pred CC
T ss_conf 79
No 10
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C*
Probab=98.66 E-value=3.1e-09 Score=71.69 Aligned_cols=113 Identities=12% Similarity=-0.059 Sum_probs=87.4
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+-+++++.+.|+|+++.++++++.++...+++++...++ ++.+|.+|++++++.|+++.... .....+...
T Consensus 33 ~d~s~~~~~~l~g~~a~~~~~~~~~~~~~~lp~~~~~~~-------~~~~d~~v~~l~pde~liv~~~~--~~~~~~~~~ 103 (206)
T 1x31_C 33 REVAFTTQLGLRAVPGSTGHAALAAATGVGLPAAVGEVA-------GDVSGTAVLWLGPDEFLLAAEEN--PALLDTLQG 103 (206)
T ss_dssp EECCSCEEEEEECCTTSHHHHHHHHHSSSCCCCSTTBEE-------ECTTSCEEEEEETTEEEEEESSC--THHHHHHHH
T ss_pred EECCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCEEE-------EECCCEEEEEECCCEEEEEECCC--HHHHHHHHH
T ss_conf 987897699998798699999999855987797677089-------73598499997899899996862--469999997
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 210001223568843699997185432221112345664441
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADV 125 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 125 (273)
......+.+.+.++.++.+.++||+++..+...+..+.....
T Consensus 104 ~~~~~~~~v~d~Sd~~~~l~lqGP~a~~vL~~l~~~dl~~~~ 145 (206)
T 1x31_C 104 ALGQEPGQVLDLSANRSVLQLEGPAAALVLRKSCPADLHPRE 145 (206)
T ss_dssp HHTTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCCTTT
T ss_pred HCCCCCEEEEEECCEEEEEEEECCCHHHHHHHHCCCCCCHHH
T ss_conf 435588799996020887687161099999865897532120
No 11
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=98.34 E-value=5.7e-08 Score=64.31 Aligned_cols=112 Identities=10% Similarity=-0.149 Sum_probs=84.0
Q ss_pred EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r 4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF 83 (273)
Q Consensus 4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~ 83 (273)
+-++.++.+.|+|+++.+|++.+.++.-..+ |.+ +|..|++.+|.+|++++++.|+++.++.. ....+...
T Consensus 35 ~e~s~~~~i~lrg~~~~~~~~~~~~~~g~~l-P~~------~n~~~~~~dd~~v~~l~~de~ll~~~~~~--~~~~~~~~ 105 (210)
T 2gag_C 35 REIAFTTQISLRCAPGTQAHAALAAATGAGL-PAK------VGEVAGEAQGTAVLWLAPDEFLATSAENT--ELGGVLSA 105 (210)
T ss_dssp EECCSCEEEEEECCTTSHHHHHHHHHHSSCC-CCS------TTBCEECTTSCEEEEEETTEEEEEESSCT--THHHHHHH
T ss_pred EECCCCEEEEEECCCCHHHHHHHHHHCCCCC-CCC------CCCEEECCCCEEEEEECCCEEEEEECCCH--HHHHHHHH
T ss_conf 9579864999983781899999998508666-887------77267547987999948986999947646--79999998
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 21000122356884369999718543222111234566444
Q gi|254780591|r 84 YKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIAD 124 (273)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 124 (273)
......+.+.+.++.++.+.++||+++......+..+....
T Consensus 106 ~~~~~~~~v~d~s~~~~~lalqGp~a~~vL~~~~~~dl~~~ 146 (210)
T 2gag_C 106 ALGDAPGQVVDLSANRSVLELTGPDAPLVLRKSCPADLHPR 146 (210)
T ss_dssp HHTTSSSEEEECTTTBCCEEEESTTHHHHHTTTCCSCCSTT
T ss_pred HCCCCCCEEEEEHHEEHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 55788838997100030252336669999984188664432
No 12
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreductase; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C*
Probab=96.66 E-value=0.0098 Score=33.73 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=56.7
Q ss_pred CC-CCEEEEEECCCHHHHHHCCCCCCHH--HCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 17-9407999875878786321326731--08998268999997999889989999704555200003333345677764
Q gi|254780591|r 6 LS-NQSFIKVCGKSAIPFLQAIITADVL--TLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLL 82 (273)
Q Consensus 6 L~-~~~~i~i~G~DA~~fL~~l~t~di~--~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~ 82 (273)
++ ++..|.|+||.|.+.|+.++..|++ +++.+++..|.+ +++ .++|.|.+++.|.+....+......+++.
T Consensus 115 ~Sd~~~~l~lqGP~a~~vL~~l~~~dl~~~~f~~~~~~~t~~----~~v--~v~i~rtge~gfeI~v~~s~a~~lw~~L~ 188 (206)
T 1x31_C 115 LSANRSVLQLEGPAAALVLRKSCPADLHPREFGVNRAITTSL----ANI--PVLLWRTGEQSWRILPRASFTEHTVHWLI 188 (206)
T ss_dssp CTTTBCCEEEESTTHHHHHTTTCCSCCCTTTSCTTEEEEEEE----TTE--EEEEEEEETTEEEEECBGGGHHHHHHHHH
T ss_pred ECCEEEEEEEECCCHHHHHHHHCCCCCCHHHCCCCEEEEEEE----CCE--EEEEEECCCCEEEEEEEHHHHHHHHHHHH
T ss_conf 602088768716109999986589753212068971899977----999--99999839797999987899999999999
Q ss_pred HHHHC
Q ss_conf 32100
Q gi|254780591|r 83 FYKLR 87 (273)
Q Consensus 83 ~~~~~ 87 (273)
.--..
T Consensus 189 dA~~e 193 (206)
T 1x31_C 189 DAMSE 193 (206)
T ss_dssp HHHGG
T ss_pred HHHHH
T ss_conf 99997
No 13
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C*
Probab=96.31 E-value=0.022 Score=31.70 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHH--HCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf 9407999875878786321326731--08998268999997999889989999704555200003333345677764321
Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVL--TLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLFYK 85 (273)
Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~--~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (273)
.+..|.|+||.|.+.|+.+++-|++ .++.+++..|.+ +++- ++|.|.+++-|.+....+......+++...-
T Consensus 120 ~~~~lalqGp~a~~vL~~~~~~dl~~~~f~~~~~~~t~~----~~v~--v~i~rtGe~gfeI~v~~s~A~~lw~~L~~a~ 193 (210)
T 2gag_C 120 NRSVLELTGPDAPLVLRKSCPADLHPRAFAVNQAIVTSV----ANIP--VLLWRTGEQAWRIMPRASFTEHTVHWLVDAM 193 (210)
T ss_dssp TBCCEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEE----TTEE--EEEEEEETTEEEEEEBGGGHHHHHHHHHHHH
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEEE----CCEE--EEEEECCCCEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 030252336669999984188664432367872677506----8999--9999869897999987999999999999998
No 14
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.57 E-value=0.058 Score=29.25 Aligned_cols=57 Identities=5% Similarity=0.127 Sum_probs=43.3
Q ss_pred CCEEEEEECCCHHHHHHCCCC-----CCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE-CCCCC
Q ss_conf 940799987587878632132-----67310899826899999799988998999970-45552
Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIIT-----ADVLTLPYKIARGSAILTPQGKILLYFLISKI-EEDTF 65 (273)
Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t-----~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~-~~~~~ 65 (273)
-.++|||+||+|.+.++.++- ..+....+....|..+.+ .|.++|+.+++.+ +++.|
T Consensus 29 aiavIRiSG~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iD~~l~~~f~~P~Sy 91 (476)
T 3gee_A 29 ALAIVRISGAGVLDLADRVFRKVHGSGKLAEAAGYTAHFGRLYD-GEEMVDEVIALVFRAPRSF 91 (476)
T ss_dssp SEEEEEEESTTHHHHHHHHEEESSSCCCGGGCCTTEEEEEEEES-SSCEEEEEEEEEEBTTBSS
T ss_pred EEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC-CCCCCCEEEEEEECCCCCC
T ss_conf 79999944644899999997223566766666662789855458-8760661899996799998
No 15
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.27 E-value=0.035 Score=30.48 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=43.8
Q ss_pred CCEEEEEECCCHHHHHHCCCCCCH-HHCCCCCEEEEEEECCC-CCEEEEEEEEE-ECCCCC
Q ss_conf 940799987587878632132673-10899826899999799-98899899997-045552
Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADV-LTLPYKIARGSAILTPQ-GKILLYFLISK-IEEDTF 65 (273)
Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di-~~l~~g~~~yt~~ln~~-G~i~~D~~i~r-~~~~~~ 65 (273)
-.++|||+||+|.+.++.++...- ...++.+..|..+.+++ |.++|+.+++. -+++.|
T Consensus 23 aiavIRiSG~~a~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~Sy 83 (462)
T 3geh_A 23 SVGIVRVSGSQAIAIAQTLFDAPGKQVWESHRILYGYIRHPQTRQIVDEALLLLMKAPRSY 83 (462)
T ss_dssp SCEEEEEESTTHHHHHHHHEECCSCCCCCTTEEEEEEECCSSSCCCCEEEEEEEECTTCSS
T ss_pred EEEEEEEECHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCC
T ss_conf 8999981005099999998578887777872789988773888877027999997899998
No 16
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=94.16 E-value=0.067 Score=28.85 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=41.3
Q ss_pred CCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEE-CCCCC
Q ss_conf 94079998758787863213267310899826899999799988998999970-45552
Q gi|254780591|r 8 NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI-EEDTF 65 (273)
Q Consensus 8 ~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~-~~~~~ 65 (273)
-.++|||+||+|.+.++.++.+. ++..+.++.|+ .+.++|.++|+++++.+ +++.|
T Consensus 47 aiaVIRiSG~~a~~i~~~~~~~~-~~~~~r~~~~~-~~~~~~~~iD~~lv~~f~~P~S~ 103 (482)
T 1xzp_A 47 AIAILRLSGPDSWKIVQKHLRTR-SKIVPRKAIHG-WIHENGEDVDEVVVVFYKSPKSY 103 (482)
T ss_dssp SCEEEEEESSSHHHHHHTTEEES-SCCCBTBCEEE-EECCSSCCCCEEEEEEECTTSSS
T ss_pred EEEEEEEECHHHHHHHHHHHCCC-CCCCCCEEEEE-EECCCCCCCCEEEEEEECCCCCC
T ss_conf 69999934161999999985567-88998479985-87589978635999996799998
Done!