HHSEARCH alignment of GI: 254780591 and SCOP domain: d1pj5a4

Alignment
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]}
Probab=99.95  E-value=2.4e-28  Score=181.89  Aligned_cols=191  Identities=15%  Similarity=0.128  Sum_probs=135.1

Q ss_pred             EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf             76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r    4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF   83 (273)
Q Consensus         4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (273)
                      +=+|+++.|+|+|+||.+|||+++|||++. .+|+++||+|||++|+|++|++|+|++++.|+++.++........+...
T Consensus        76 fD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~~  154 (315)
T d1pj5a4          76 YDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAAR  154 (315)
T ss_dssp             EECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHH
T ss_pred             ECCCCCEEEEEECCCHHHHHHHHHCCCCCC-CCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             040020217761366688765442256312-2686557775155567354212220122100122450356666554432


Q ss_pred             HHH-----CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC--------------------------CCCHHHHHH-
Q ss_conf             210-----001223568843699997185432221112345664--------------------------441012221-
Q gi|254780591|r   84 YKL-----RSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSI--------------------------ADVLLHRTW-  131 (273)
Q Consensus        84 ~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~-  131 (273)
                      ...     ...+.+.+.+..+..++++||+++..+..+......                          .++..+.++ 
T Consensus       155 ~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~~  234 (315)
T d1pj5a4         155 HQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYT  234 (315)
T ss_dssp             HHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEE
T ss_pred             HHHHCCCCCCCCEEEECCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCEEEECC
T ss_conf             22220466665404766856135641385399999970553211234664313699999989999956756777378601


Q ss_pred             ----------------CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             ----------------0135555796788888875201334565432212331001112201331475213310132100
Q gi|254780591|r  132 ----------------GHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQ  195 (273)
Q Consensus       132 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~f~G~e~~~~~~  195 (273)
                                      ......+.+..+++..+.+.+.+.+..+..   ....+....+.+.++++|+||+||+++.+++
T Consensus       235 ~~~~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~---~~~~P~EagL~~~v~~~K~~FiGkeAl~~~~  311 (315)
T d1pj5a4         235 SADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMT---TEHDPFEAGLGFAVKMAKESFIGKGALEGRT  311 (315)
T ss_dssp             EHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBC---TTSCTTTTTCGGGCCTTSSCCTTHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCCCCC---CCCCHHHCCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf             0877778788887530037958647788778999859874465589---9989788696142269999955899999898


Q ss_pred             CCC
Q ss_conf             124
Q gi|254780591|r  196 HRN  198 (273)
Q Consensus       196 ~~~  198 (273)
                      .+|
T Consensus       312 ~~g  314 (315)
T d1pj5a4         312 EEA  314 (315)
T ss_dssp             STT
T ss_pred             HHC
T ss_conf             638


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]