HHSEARCH alignment of GI: 254780591 and SCOP domain: d1v5va2

Alignment
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.94  E-value=1.2e-26  Score=172.02  Aligned_cols=195  Identities=15%  Similarity=0.140  Sum_probs=137.3

Q ss_pred             EECCCCEEEEEECCCHHHHHHCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf             76179407999875878786321326731089982689999979998899899997045552000033333456777643
Q gi|254780591|r    4 VYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDRSKRDSLIDKLLF   83 (273)
Q Consensus         4 ~~L~~~~~i~i~G~DA~~fL~~l~t~di~~l~~g~~~yt~~ln~~G~i~~D~~i~r~~~~~~~~~~~~~~~~~~~~~~~~   83 (273)
                      +=+|+++.|+|+||||.+|||+++||||+++++|+++||+|||++|+|++|++|+|.+++.|+++.++........+...
T Consensus        48 fD~S~~~~i~v~G~da~~~L~~l~t~~i~~l~~g~~~yt~~ln~~Ggi~~D~~v~r~~~~~~~~~~~~~~~~~~~~~~~~  127 (310)
T d1v5va2          48 FDVSHMGEIVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFEKLYAWFTY  127 (310)
T ss_dssp             EECTTSEEEEEESTTHHHHHHHHSSSCTTSSCSSEEEEEEEECTTSCEEEEEEEEEEETTEEEEEECTTTHHHHHHHHHH
T ss_pred             EECCCCEEEEEECCCHHHHHHHCCCCCCCHHHHHHCCCEEEECCCCCEEEEEEEEECCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             97888279999837604443210000000122210020221358886564024430321232112220157889987650


Q ss_pred             H------HHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC------------------------CCCCCCCCHHHHHHC-
Q ss_conf             2------100012235688436999971854322211123------------------------456644410122210-
Q gi|254780591|r   84 Y------KLRSNVIIEIQPINGVVLSWNQEHTFSNSSFID------------------------ERFSIADVLLHRTWG-  132 (273)
Q Consensus        84 ~------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~-  132 (273)
                      .      ....++.+.+.+.++..+++|||+|+.......                        .+....++..+.++- 
T Consensus       128 ~~~~~~~~~~~dv~i~d~t~~~~~l~lqGP~S~~lL~~l~~~~~~~~~~~~~~~~~~~g~~v~i~R~g~tGe~G~Ei~~~  207 (310)
T d1v5va2         128 LKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQARWVELDGIKMLLSRSGYTGENGFEVYIE  207 (310)
T ss_dssp             HHHHHHTTSCCCCEEEECTTTEEEEEEESTTHHHHHHHHHSCCGGGSCTTBEEEEEETTEEEEEECCCSSSSCEEEEEEE
T ss_pred             CHHHHHCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCEEECCCCCCCCEEEEEEC
T ss_conf             10333214665305896357641110001357788988622010010011210211267653230124578876999953


Q ss_pred             ------------------------------CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC------CCCCCCCCCCCE
Q ss_conf             ------------------------------13555579678888887520133456543221------233100111220
Q gi|254780591|r  133 ------------------------------HNEKIASDIKTYHELRINHGIVDPNTDFLPST------IFPHDALMDLLN  176 (273)
Q Consensus       133 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  176 (273)
                                                    .....+.+..+++..+.+.+.+.+..+..+..      ....+......+
T Consensus       208 ~~~~~~~~~~~~~~~~~a~~l~~~l~~aG~~~g~~p~G~~A~d~lRiE~G~~~~g~d~~~~~~~~~~~~~~tP~E~gl~~  287 (310)
T d1v5va2         208 DANPYHPDESKRGEPEKALHVWERILEEGKKYGIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEF  287 (310)
T ss_dssp             CCCTTCSSGGGCCCCHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHHTCCCBTTTBCCCCCSSCSCCSSCTTTTTCGG
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCEEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf             65544421112246899999999999747131988825657678999768664564356200244576899867769721


Q ss_pred             EEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             13314752133101321001244
Q gi|254780591|r  177 GISLTKGCYIGQEVVSRIQHRNI  199 (273)
Q Consensus       177 ~~~~~k~~f~G~e~~~~~~~~~~  199 (273)
                      .++++|+ |+||+++++++.+|+
T Consensus       288 ~v~~~k~-FiGkeal~~~~~~Gv  309 (310)
T d1v5va2         288 AIYWDKD-FIGKDALLKQKERGV  309 (310)
T ss_dssp             GCCTTSC-CTTHHHHHHHHHHCC
T ss_pred             CCCCCCC-CCCHHHHHHHHHHCC
T ss_conf             1489989-660999999997588


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]