RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein
(glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898,
           unknown protein from 2D-PAGE (SPOT PR51), structural
           genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}
           (A:199-338)
          Length = 140

 Score = 65.8 bits (160), Expect = 6e-12
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 142 KTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIR 201
           + +  L I  G    +       I P    +  L GIS  KGCY GQE V+R + R   +
Sbjct: 1   QQWLALNIEAGFPVIDAANSGQFI-PQATNLQALGGISFKKGCYTGQEXVARAKFRGANK 59

Query: 202 KRPMIITGTDD-LPPSGSPILTDDIEIG------TLGVVVGKKALAIARIDKVDHAIKKG 254
           +   ++ G+   LP +G  +     E           V +    + +  +   D      
Sbjct: 60  RALWLLAGSASRLPEAGEDLELKXGENWRRTGTVLAAVKLEDGQVVVQVVXNNDXEP--D 117

Query: 255 MALTVHGVRVKA 266
               V       
Sbjct: 118 SIFRVRDDANTL 129


>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga
          maritima} (A:50-139)
          Length = 90

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 16/82 (19%), Positives = 36/82 (43%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
            V G  A+ F+  +IT D  +LP   A  S +    G I+   ++ K+  D  ++ ++ 
Sbjct: 5  FLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNA 64

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
          +  +   + +  +    +V + 
Sbjct: 65 ANIEKDFNWIKSHSKNFDVEVS 86


>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A
          {Homo sapiens} PDB: 1wsv_A* (A:55-148)
          Length = 94

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 9/82 (10%), Positives = 25/82 (30%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
           K+ G   +  +++++  D+  L       S      G IL   +++   E    +  + 
Sbjct: 5  TKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNA 64

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
             +  +  +            
Sbjct: 65 GCWEKDLALMQDKVRELQNQGR 86


>3gir_A Aminomethyltransferase; glycine cleavage system,
          aminotransferase, structural genomics; 1.60A
          {Bartonella henselae} (A:83-171)
          Length = 89

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 17/82 (20%), Positives = 32/82 (39%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
          I V G  A+ FL   +  D   L    +R S +L  +  IL   +++++ E  F+L  + 
Sbjct: 5  IAVEGPKAVEFLSYALPVDAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANA 64

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
              +   +L          + 
Sbjct: 65 GNAQADFAELEKRAFGFECQVI 86


>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural
          genomics, riken structural genomics/proteomics
          initiative, RSGI; 1.50A {Pyrococcus horikoshii}
          (A:55-149)
          Length = 95

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 17/82 (20%), Positives = 32/82 (39%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
          I   GK A+ FLQ + T D+   P      + +L  +G I    L+  +  + +++  D 
Sbjct: 4  IVFRGKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDS 63

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
             + L     + K       +
Sbjct: 64 DAFEKLYAWFTYLKRTIEQFTK 85


>1vlo_A Aminomethyltransferase; NP417381,
          tetrahydrofolate-dependent) of glycine cleavage system,
          structural genomics, JCSG; HET: MSE; 1.70A {Escherichia
          coli K12} (A:63-152)
          Length = 90

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARG--SAILTPQGKILLYFLISKIEEDTFILEI 69
          + + G     FL+ ++  DV  L  K  +   S  L   G ++   ++    ED F L +
Sbjct: 5  VDLRGSRTREFLRYLLANDVAKLT-KSGKALYSGXLNASGGVIDDLIVYYFTEDFFRLVV 63

Query: 70 DRSKRDSLIDKLLFYKLRSNVIIEIQ 95
          + + R+  +  +  +     + I ++
Sbjct: 64 NSATREKDLSWITQHAEPFGIEITVR 89


>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding,
          folate binding, amine oxidase, oxidoreductase; HET:
          FAD; 1.61A {Arthrobacter globiformis} (A:508-600)
          Length = 93

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
          ++V G  A+  LQ + TAD+          + +L   G +     ++++ EDTF L  + 
Sbjct: 4  LEVSGPGALKLLQELTTADL-AKKPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANG 62

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
          +   +  ++   ++ +S    +
Sbjct: 63 NIDTAYFERAARHQTQSGSATD 84


>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding,
           folate binding, amine oxidase, oxidoreductase; HET: FAD;
           1.61A {Arthrobacter globiformis} (A:687-830)
          Length = 144

 Score = 58.7 bits (142), Expect = 8e-10
 Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 9/128 (7%)

Query: 144 YHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRKR 203
           +  LR+  G     TD       P +A   L   + + K  +IG+  +         R+ 
Sbjct: 4   FSSLRLEKGYRSWGTDMTTEHD-PFEA--GLGFAVKMAKESFIGKGALEGRTEEASARRL 60

Query: 204 -PMIITGTDDLPPSGSPILTDDIEIGTLGVVV----GKKALAIARIDKVDHAIKKGMALT 258
             + I     +     P+   +  +G +          K +A + +     ++   + + 
Sbjct: 61  RCLTIDDGRSIVLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPG-TVSVGDSVDIE 119

Query: 259 VHGVRVKA 266
             G R+ A
Sbjct: 120 YFGRRITA 127


>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
          alpha-beta, beta-barrel, structural genomics, PSI,
          protein structure initiative; 2.08A {Bacillus subtilis}
          (A:55-142)
          Length = 88

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
          ++V G  ++ FLQ + T DV  L    A+ +A   P G  +   LI +  E+ ++L I+ 
Sbjct: 4  VEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENRYLLVINA 63

Query: 72 SKRDSLIDKLLFYKLRSNVIIE 93
          S  D  +          +V I+
Sbjct: 64 SNIDKDLA-WXKEHAAGDVQID 84


>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit;
          flavoenzyme, electron transfer, folate- methylating
          enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A
          {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A*
          1vrq_A* (A:632-724)
          Length = 93

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 4/86 (4%)

Query: 12 IKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFILEIDR 71
          I++ GK A  FL  I T     L   + R   +    G I    +  ++ ED F+L    
Sbjct: 4  IEIRGKDAAEFLNRIYTNGYTKLKVGMGRYGVMCKADGMIFDDGVTLRLAEDRFLLHTTT 63

Query: 72 SKRDSLIDKLL----FYKLRSNVIIE 93
               ++D L           +V   
Sbjct: 64 GGAADVLDWLEEWLQTEWPDLDVTCT 89


>1vly_A SPOT PR51, unknown protein from 2D-PAGE; 1789265, B2898,
          unknown protein from 2D-PAGE (SPOT PR51), structural
          genomics, JCSG; HET: MSE; 1.30A {Escherichia coli}
          (A:38-125)
          Length = 88

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 8  NQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKIEEDTFIL 67
          + +   + G  +  + Q  +TADV          +A    +GK      + +  +  F  
Sbjct: 1  DWALATITGADSEKYXQGQVTADVSQXAEDQHLLAAHCDAKGKXWSNLRLFRDGDG-FAW 59

Query: 68 EIDRSKRDSLIDKLLFYKLRSNVIIE 93
             RS R+  + +L  Y + S V I 
Sbjct: 60 IERRSVREPQLTELKKYAVFSKVTIA 85


>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga
           maritima} (A:221-364)
          Length = 144

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 13/130 (10%)

Query: 143 TYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNIIRK 202
                R+    +    D   +T  P +    L   + L    ++G+E + + + +   + 
Sbjct: 6   ARDVCRLEATYLLYGQDMDENT-NPFEV--GLSWVVKL-NKDFVGKEALLKAKEKVERKL 61

Query: 203 RPMIITGTDDLPPSGSPILTDDIEIGTLGVVV----GKKALAIARIDKVDHAIKKGMALT 258
             + ++G       G  +L +   +G +          K++A+A + K            
Sbjct: 62  VALELSGKRI-ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSK-SVK-IGDQLGV 118

Query: 259 VH--GVRVKA 266
           V   G  V+A
Sbjct: 119 VFPGGKLVEA 128


>1vlo_A Aminomethyltransferase; NP417381,
           tetrahydrofolate-dependent) of glycine cleavage system,
           structural genomics, JCSG; HET: MSE; 1.70A {Escherichia
           coli K12} (A:1-62,A:153-289,A:367-381)
          Length = 214

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 1/70 (1%)

Query: 140 DIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISLTKGCYIGQEVVSRIQHRNI 199
            +     LR+  G      +    TI P  A              +IG+E +   +   +
Sbjct: 142 GLGARDTLRLEAGXNLYGQEXDE-TISPLAANXGWTIAWEPADRDFIGREALEVQREHGV 200

Query: 200 IRKRPMIITG 209
             +    + G
Sbjct: 201 FVRNGKAVAG 210


>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit;
           flavoenzyme, electron transfer, folate- methylating
           enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A
           {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A*
           1vrq_A* (A:847-965)
          Length = 119

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 14/100 (14%)

Query: 181 TKGCYIGQEVVSRIQHRNIIRKR--PMIITGTDDLPPSGSPILTDDIEIGTL-GVVVG-- 235
               +IG    SR  +    RK+   ++        P G+ ++  D         + G  
Sbjct: 3   KLKDFIGNRSYSRADNAREDRKQLVSVLPVDKSLRLPEGAALVASDALASEGITPMEGWV 62

Query: 236 ---------KKALAIARIDKVDHAIKKGMALTVHGVRVKA 266
                     +   +A I    + I + +   V    V  
Sbjct: 63  TSSYDSPNLGRTFGLALIKNGRNRIGEVLKTPVGDQLVDV 102


>1yx2_A Aminomethyltransferase; glycine cleavage system T protein,
           alpha-beta, beta-barrel, structural genomics, PSI,
           protein structure initiative; 2.08A {Bacillus subtilis}
           (A:284-365)
          Length = 82

 Score = 28.1 bits (63), Expect = 1.3
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 201 RKRPMIITGTDDLPPSGSPILTDDIEIG-----TLGVVVGKKALAIARIDKVDHAIKKGM 255
           RK   +      +P  G  +  +   +G     T    +G K + +A ID     I   +
Sbjct: 3   RKLVGLEXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLG-KNVGLALIDSETSEIGTVV 61

Query: 256 ALTVHGVRVKA 266
            + +    VKA
Sbjct: 62  DVEIRKKLVKA 72


>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI; 1.50A {Pyrococcus horikoshii}
           (A:312-401)
          Length = 90

 Score = 28.1 bits (63), Expect = 1.3
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 201 RKRPMIITGTDDLPPSGSPILTDDIEIG-----TLGVVVGKKALAIARIDKVDHAIKKGM 255
           RK          +P  G  +  +   IG     TL  ++    + IA + +        +
Sbjct: 2   RKLVHFKMIDKGIPREGYKVYANGEMIGEVTSGTLSPLLN-VGIGIAFVKEEYAKPGIEI 60

Query: 256 ALTVHGVRVKA 266
            + + G R KA
Sbjct: 61  EVEIRGQRKKA 71


>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo
           sapiens} PDB: 1wsv_A* (A:288-375)
          Length = 88

 Score = 26.6 bits (59), Expect = 3.4
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 201 RKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVV----GKKALAIARIDKVDHAIKKGMA 256
           R+R  ++     +      +  +  +IGT+         KK +A+  +          + 
Sbjct: 3   RRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLL 62

Query: 257 LTVHGVRVKA 266
           + V   +  A
Sbjct: 63  VEVRRKQQMA 72


>2og5_A Putative oxygenase; non-ribosomal peptide synthesis,
           iron(II)/alpha- ketoglutarate dependent hydroxylase,
           jelly-roll fold; 1.45A {Streptomyces coelicolor} PDB:
           2og6_A 2og7_A* (A:)
          Length = 357

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 8/58 (13%), Positives = 17/58 (29%)

Query: 83  FYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERFSIADVLLHRTWGHNEKIASD 140
                    +  + + G +   +   T    +    R+   D  L RT+   +   S 
Sbjct: 283 LQAHFDATAVTHRLLPGELAIVDNRVTVHGRTEFTPRYDGTDRWLQRTFVLTDLRRSR 340


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0672    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,127,821
Number of extensions: 96867
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 23
Length of query: 273
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 186
Effective length of database: 2,015,014
Effective search space: 374792604
Effective search space used: 374792604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)