BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein
(glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score =  556 bits (1433), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60
           MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI
Sbjct: 1   MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60

Query: 61  EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120
           EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF
Sbjct: 61  EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120

Query: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180
           SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL
Sbjct: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180

Query: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240
           TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA
Sbjct: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240

Query: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273
           IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK
Sbjct: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273


>gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 369

 Score = 23.9 bits (50), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%)

Query: 159 DFLPSTIFPHDALMDLLNGISL-TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSG 217
           D L S+ F   ++  LL  + + T G  +G + V+ +          M+   T +LPP  
Sbjct: 54  DSLRSSPFTEQSMRSLLQNLGISTPGGRLGSKNVAAV----------MV---TANLPPFA 100

Query: 218 SPILTDDIEIGTLG 231
           SP    D+ I +LG
Sbjct: 101 SPGSRIDVSINSLG 114


>gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 432

 Score = 23.5 bits (49), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 213 LPPSGSPILTDDIEIG-TLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASF 268
           L P G+ I T    IG      VG++A+ +  +  V+H  KK   L +H   ++ SF
Sbjct: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.140    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,576
Number of Sequences: 1233
Number of extensions: 7688
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 328,796
effective HSP length: 73
effective length of query: 200
effective length of database: 238,787
effective search space: 47757400
effective search space used: 47757400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)