BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62] (273 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780591|ref|YP_003065004.1| aminomethyltransferase protein (glycine cleavage) [Candidatus Liberibacter asiaticus str. psy62] Length = 273 Score = 556 bits (1433), Expect = e-160, Method: Compositional matrix adjust. Identities = 273/273 (100%), Positives = 273/273 (100%) Query: 1 MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60 MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI Sbjct: 1 MSSVYLSNQSFIKVCGKSAIPFLQAIITADVLTLPYKIARGSAILTPQGKILLYFLISKI 60 Query: 61 EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120 EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF Sbjct: 61 EEDTFILEIDRSKRDSLIDKLLFYKLRSNVIIEIQPINGVVLSWNQEHTFSNSSFIDERF 120 Query: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL Sbjct: 121 SIADVLLHRTWGHNEKIASDIKTYHELRINHGIVDPNTDFLPSTIFPHDALMDLLNGISL 180 Query: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA Sbjct: 181 TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSGSPILTDDIEIGTLGVVVGKKALA 240 Query: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK Sbjct: 241 IARIDKVDHAIKKGMALTVHGVRVKASFPHWYK 273 >gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter asiaticus str. psy62] Length = 369 Score = 23.9 bits (50), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 14/74 (18%) Query: 159 DFLPSTIFPHDALMDLLNGISL-TKGCYIGQEVVSRIQHRNIIRKRPMIITGTDDLPPSG 217 D L S+ F ++ LL + + T G +G + V+ + M+ T +LPP Sbjct: 54 DSLRSSPFTEQSMRSLLQNLGISTPGGRLGSKNVAAV----------MV---TANLPPFA 100 Query: 218 SPILTDDIEIGTLG 231 SP D+ I +LG Sbjct: 101 SPGSRIDVSINSLG 114 >gi|254780613|ref|YP_003065026.1| adenylosuccinate synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 432 Score = 23.5 bits (49), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%) Query: 213 LPPSGSPILTDDIEIG-TLGVVVGKKALAIARIDKVDHAIKKGMALTVHGVRVKASF 268 L P G+ I T IG VG++A+ + + V+H KK L +H ++ SF Sbjct: 122 LSPCGAHIGTTQRGIGPAYEDRVGRRAIRVMDLTDVEHISKKIEQLLLHHNALRRSF 178 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.140 0.410 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 177,576 Number of Sequences: 1233 Number of extensions: 7688 Number of successful extensions: 17 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 5 length of query: 273 length of database: 328,796 effective HSP length: 73 effective length of query: 200 effective length of database: 238,787 effective search space: 47757400 effective search space used: 47757400 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)