HHsearch alignment for GI: 254780592 and conserved domain: COG3063
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.88 E-value=9e-21 Score=144.96 Aligned_cols=216 Identities=19% Similarity=0.180 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCC--CH--------HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999999985403685433--11--------79999998420199999999999995757879999999999874100
Q gi|254780592|r 17 CIVFLIPLLLFSSCHLNPRIS--IP--------DPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT 86 (271)
Q Consensus 17 ~~~~l~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~ 86 (271)
T Consensus 6 ~~i~lv~~La~~~cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~ 85 (250)
T COG3063 6 TRISLVFSLALGACVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN 85 (250)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 88999998763200589975332258899999999999999778999999889999884952088999999999990775
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 12446665566327521001355553210000011258876422110--0002335669999999742111110000000
Q gi|254780592|r 87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRP--DIPDWQLISAKGSVLAQMGKHSEALIEYERA 164 (271)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 164 (271)
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 56799999998529886405521069997089868999999998718887775304544578886437704479999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 00000000124577765433223554359999999538985478889999999869989999999986
Q gi|254780592|r 165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQE 232 (271)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~ 232 (271)
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 88375787678998798875313018999999997025665899998999999965488999999999