HHsearch alignment for GI: 254780592 and conserved domain: COG4105
>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=99.18 E-value=6.6e-09 Score=72.25 Aligned_cols=196 Identities=17% Similarity=0.070 Sum_probs=127.5
Q ss_pred HHHHCCCCC--------CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 854036854--------33117999999842019999999999999575787---9999999999874100124466655
Q gi|254780592|r 27 FSSCHLNPR--------ISIPDPESLENMNHEQLLEVTSTIGLQYQSHTKNK---MIGIVYADVLRRVGRTAQALAVMRQ 95 (271)
Q Consensus 27 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~---~~~~~~a~~l~~~g~~~~A~~~~~~ 95 (271)
T Consensus 17 ~~~cs~~~~~~~~~~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr 96 (254)
T COG4105 17 STGCSGDKDKNGVYNLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDR 96 (254)
T ss_pred HCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 12577623330555788999999999998637889999999999870999811289999999998813558999999999
Q ss_pred HHHCCCCCCHH---HHHHHHHHHH--------HCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 66327521001---3555532100--------000112588764221100002335669999999742111110000000
Q gi|254780592|r 96 VAILYPEDQEV---LAAYGKSLAN--------AGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA 164 (271)
Q Consensus 96 al~~~p~~~~~---~~~~~~~~~~--------~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 164 (271)
T Consensus 97 Fi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~-----------------Ya~dA~~~i 159 (254)
T COG4105 97 FIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR-----------------YAPDAKARI 159 (254)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHH
T ss_conf 998789998716999999998752677544477999999999999998788970-----------------235599999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH
Q ss_conf 000000001245777654332235543599999995389854---7888999999986998999999998629172866
Q gi|254780592|r 165 LELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADS---RIRQNLALVVGLQGRMKEAYSIASQELSPEEATR 240 (271)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~ 240 (271)
T Consensus 160 ~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s 237 (254)
T COG4105 160 VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHCCCCC
T ss_conf 99999988999999999999057699999999998714555204778999999999828727899999-9997368988