HHsearch alignment for GI: 254780592 and conserved domain: COG5010

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=99.93  E-value=1.2e-24  Score=168.67  Aligned_cols=245  Identities=36%  Similarity=0.504  Sum_probs=223.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCC--CCC------CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999985403685--433------1179999998420199999999999995757879999999999874100
Q gi|254780592|r   15 IKCIVFLIPLLLFSSCHLNP--RIS------IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT   86 (271)
Q Consensus        15 ~~~~~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~   86 (271)
T Consensus         4 ~~~~~~a~l~~~~~~c~~~~~~~~~~~g~~~~a~~~~~~~~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a   82 (257)
T COG5010           4 LGGAVLAALALSLAGCAGQAGQREMSTGASAKATGAPESSLAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDA   82 (257)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCC
T ss_conf             877999999999742421157400002221001144789999876668999999998068201778-8877777740555


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r   87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus        87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
T Consensus        83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~  162 (257)
T COG5010          83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE  162 (257)
T ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             50078875540147454999999999999804568899999998436999746666778999973675677899999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf             00000012457776543322355435999999953898547888999999986998999999998629172866599999
Q gi|254780592|r  167 LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIK  246 (271)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~  246 (271)
T Consensus       163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~~~~~~~l~  242 (257)
T COG5010         163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELLSEQAANNVAALR  242 (257)
T ss_pred             HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             42588446665899999727798999999999867887638999899998404886777762420036444766999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99983212999999
Q gi|254780592|r  247 SILSQRDPWKKIAK  260 (271)
Q Consensus       247 ~~l~~~~~~~~~a~  260 (271)
T Consensus       243 ~~~~~~~~~~~~~~  256 (257)
T COG5010         243 AAASQSGAWTQLAK  256 (257)
T ss_pred             HHHCCCCHHHHHHC
T ss_conf             86142431677740