HHsearch alignment for GI: 254780592 and conserved domain: COG5010
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion].
Probab=99.93 E-value=1.2e-24 Score=168.67 Aligned_cols=245 Identities=36% Similarity=0.504 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCC------CHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999985403685--433------1179999998420199999999999995757879999999999874100
Q gi|254780592|r 15 IKCIVFLIPLLLFSSCHLNP--RIS------IPDPESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRT 86 (271)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~ 86 (271)
T Consensus 4 ~~~~~~a~l~~~~~~c~~~~~~~~~~~g~~~~a~~~~~~~~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a 82 (257)
T COG5010 4 LGGAVLAALALSLAGCAGQAGQREMSTGASAKATGAPESSLAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDA 82 (257)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHCCCC
T ss_conf 877999999999742421157400002221001144789999876668999999998068201778-8877777740555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 12446665566327521001355553210000011258876422110000233566999999974211111000000000
Q gi|254780592|r 87 AQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE 166 (271)
Q Consensus 87 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 166 (271)
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 50078875540147454999999999999804568899999998436999746666778999973675677899999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 00000012457776543322355435999999953898547888999999986998999999998629172866599999
Q gi|254780592|r 167 LSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGADSRIRQNLALVVGLQGRMKEAYSIASQELSPEEATRNIKYIK 246 (271)
Q Consensus 167 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~La~~~~~~g~~~eA~~~~~~~L~~~~~~~~~~~l~ 246 (271)
T Consensus 163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~~~~~~~l~ 242 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELLSEQAANNVAALR 242 (257)
T ss_pred HCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 42588446665899999727798999999999867887638999899998404886777762420036444766999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99983212999999
Q gi|254780592|r 247 SILSQRDPWKKIAK 260 (271)
Q Consensus 247 ~~l~~~~~~~~~a~ 260 (271)
T Consensus 243 ~~~~~~~~~~~~~~ 256 (257)
T COG5010 243 AAASQSGAWTQLAK 256 (257)
T ss_pred HHHCCCCHHHHHHC
T ss_conf 86142431677740