HHsearch alignment for GI: 254780592 and conserved domain: PRK06330
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=97.83 E-value=0.002 Score=38.60 Aligned_cols=120 Identities=10% Similarity=0.039 Sum_probs=73.5
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHH------------------HHHHHHHHHCCCCCCHHHH
Q ss_conf 8420199999999999995757879999999999874100124------------------4666556632752100135
Q gi|254780592|r 47 MNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVLRRVGRTAQA------------------LAVMRQVAILYPEDQEVLA 108 (271)
Q Consensus 47 ~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l~~~g~~~~A------------------~~~~~~al~~~p~~~~~~~ 108 (271)
T Consensus 43 ~~~n~~~ea~~~~~~hl~~~~~sI~alY~~gil~l~~~~~~d~~l~~ll~~F~~~~kw~ivE~i~~~iL-~y~e~~~AL~ 121 (906)
T PRK06330 43 KSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLLDSFKQNLKWAIVEHICDKIL-LYGENKLALY 121 (906)
T ss_pred HHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCHHHHH
T ss_conf 732417999999999985080036999998889861045632659999999986130069999999999-8531078999
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 555321000001125887642211000023356699999997421111100000000000
Q gi|254780592|r 109 AYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELS 168 (271)
Q Consensus 109 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~ 168 (271)
T Consensus 122 ~la~~y~~~~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~~rf 180 (906)
T PRK06330 122 TLAEAYAKLKKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAIYRF 180 (906)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_conf 9999999835774389999999971344668999998888740-2688999999999999