HHsearch alignment for GI: 254780592 and conserved domain: TIGR02521
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.89 E-value=9.5e-22 Score=150.95 Aligned_cols=215 Identities=17% Similarity=0.178 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHC------CCC-CCCCHH---------HHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 999999999985403------685-433117---------9999998420199999999999995757879999999999
Q gi|254780592|r 17 CIVFLIPLLLFSSCH------LNP-RISIPD---------PESLENMNHEQLLEVTSTIGLQYQSHTKNKMIGIVYADVL 80 (271)
Q Consensus 17 ~~~~l~~~~~~~~~~------~~~-~~~~~~---------~~~~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~~a~~l 80 (271)
T Consensus 2 ~l~~~~~l~GC~~~~P~~q~~~~~~~~~~~~~~~~a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~a~~~lA~~Y 81 (247)
T TIGR02521 2 ALVLLLALTGCVTTPPTVQEQEVPESSRTTDREKAAKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYDAYLALALYY 81 (247)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 88784678515788789778788887551027999999999999998607878999999999873766612899999999
Q ss_pred HHHH--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8741--0012446665566327521001355553210000--011258876422110--000233566999999974211
Q gi|254780592|r 81 RRVG--RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAG--YLDEGLDAINRAQRP--DIPDWQLISAKGSVLAQMGKH 154 (271)
Q Consensus 81 ~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~a~~~--~p~~~~~~~~lg~~~~~~~~~ 154 (271)
T Consensus 82 q~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~FLC~~g~~~~~~A~~~F~~A~~~p~Y~~~~~~~eN~G~C~~~~g~~ 161 (247)
T TIGR02521 82 QQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTFLCQQGNDKYEQAEQQFEAAIEDPLYPQPARSYENAGLCALKAGDT 161 (247)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 87179955789999999862489985232014577640489706899999999986688973302455499999861786
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 111000000000000000124577765433223554359999999538---98547888999999986998999999998
Q gi|254780592|r 155 SEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMI---GADSRIRQNLALVVGLQGRMKEAYSIASQ 231 (271)
Q Consensus 155 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~La~~~~~~g~~~eA~~~~~~ 231 (271)
T Consensus 162 ~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~~~G~~~~~a~sL~Lg~riA~~~Gd~~~~~~y~~q 241 (247)
T TIGR02521 162 EKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQARALLERYQQTVGVKNQTAESLWLGIRIARALGDVAAAKRYGAQ 241 (247)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 88999999999858788855799999987507728999999999987367888873478999999984429999999998