HHsearch alignment for GI: 254780592 and conserved domain: TIGR02561

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK; InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia..
Probab=96.21  E-value=0.06  Score=29.61  Aligned_cols=102  Identities=17%  Similarity=0.197  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             211111000000000000000124577765433223554359999999538985---47888999999986998999999
Q gi|254780592|r  152 GKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGRMKEAYSI  228 (271)
Q Consensus       152 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~~~eA~~~  228 (271)
T Consensus        30 ~~~~d~~l~L~AlRvLrP~l~~~d~~dG~L~i~~G~y~dAaR~L~E~~~~~~~~svm~yg~ALlAlcL~~~~D--~~W~~  107 (190)
T TIGR02561        30 ADPYDIELLLDALRVLRPNLKELDMFDGWLLIARGNYDDAARILRELLASAGAASVMPYGKALLALCLSAKGD--DEWHL  107 (190)
T ss_pred             CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC--HHHHH
T ss_conf             7888899999998502765068899999998615875899999998724899720437899999998743288--88899


Q ss_pred             -HHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             -998629172866599999999832129
Q gi|254780592|r  229 -ASQELSPEEATRNIKYIKSILSQRDPW  255 (271)
Q Consensus       229 -~~~~L~~~~~~~~~~~l~~~l~~~~~~  255 (271)
T Consensus       108 ~A~e~L~~~a~~dav~LVkAL~~~~D~~  135 (190)
T TIGR02561       108 HADEVLEEDADADAVALVKALEAREDVL  135 (190)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9999874487850679999886532489