HHsearch alignment for GI: 254780592 and conserved domain: TIGR02561
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK; InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia..
Probab=96.21 E-value=0.06 Score=29.61 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 211111000000000000000124577765433223554359999999538985---47888999999986998999999
Q gi|254780592|r 152 GKHSEALIEYERALELSPNESSIVSNIAMSYLLMGDLKTAEEKLRFASQMIGAD---SRIRQNLALVVGLQGRMKEAYSI 228 (271)
Q Consensus 152 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~La~~~~~~g~~~eA~~~ 228 (271)
T Consensus 30 ~~~~d~~l~L~AlRvLrP~l~~~d~~dG~L~i~~G~y~dAaR~L~E~~~~~~~~svm~yg~ALlAlcL~~~~D--~~W~~ 107 (190)
T TIGR02561 30 ADPYDIELLLDALRVLRPNLKELDMFDGWLLIARGNYDDAARILRELLASAGAASVMPYGKALLALCLSAKGD--DEWHL 107 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC--HHHHH
T ss_conf 7888899999998502765068899999998615875899999998724899720437899999998743288--88899
Q ss_pred -HHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -998629172866599999999832129
Q gi|254780592|r 229 -ASQELSPEEATRNIKYIKSILSQRDPW 255 (271)
Q Consensus 229 -~~~~L~~~~~~~~~~~l~~~l~~~~~~ 255 (271)
T Consensus 108 ~A~e~L~~~a~~dav~LVkAL~~~~D~~ 135 (190)
T TIGR02561 108 HADEVLEEDADADAVALVKALEAREDVL 135 (190)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999874487850679999886532489