HHsearch alignment for GI: 254780592 and conserved domain: pfam04348

>pfam04348 LppC LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.

Probab=95.78  E-value=0.12  Score=27.82  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             HHHHHHHHCCHHHHHHHHHHH--HCCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHH--HHHHC-HHHHHHHHHHHHHHH
Q ss_conf             999987410012446665566--327521-001355553210000011258876422--11000-023356699999997
Q gi|254780592|r   77 ADVLRRVGRTAQALAVMRQVA--ILYPED-QEVLAAYGKSLANAGYLDEGLDAINRA--QRPDI-PDWQLISAKGSVLAQ  150 (271)
Q Consensus        77 a~~l~~~g~~~~A~~~~~~al--~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a--~~~~p-~~~~~~~~lg~~~~~  150 (271)
T Consensus        31 a~a~i~eg~~~qA~~ll~~l~~~~L~~~q~~e~~Ll~A~l~~~~~~~~~Al~~L~~~~~~~L~~~q~~r~~~l~A~~~~~  110 (535)
T pfam04348        31 ARVLIEENKIAQAQALLRELSVQQLTDEQKLDKSLLEAELAAAKRQNEVALQQLSHQHLSGLSPSQQSRYYEGRARIAEA  110 (535)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99999779999999999974041199999999999999999975999999998557981107999999999999999997


Q ss_pred             HHHHHHHHHH
Q ss_conf             4211111000
Q gi|254780592|r  151 MGKHSEALIE  160 (271)
Q Consensus       151 ~~~~~~A~~~  160 (271)
T Consensus       111 ~~~~l~a~r~  120 (535)
T pfam04348       111 RGDAIEAAKA  120 (535)
T ss_pred             CCCHHHHHHH
T ss_conf             6986999999