HHsearch alignment for GI: 254780592 and conserved domain: pfam06552
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=97.10 E-value=0.0013 Score=39.88 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 00124466655663275210013555532100000112588764221100002335669999999742111110000000
Q gi|254780592|r 85 RTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERA 164 (271)
Q Consensus 85 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 164 (271)
T Consensus 6 fFE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~d------------------------s~~Mi~dAisKlEeA 61 (186)
T pfam06552 6 FFEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPD------------------------AKKMIQDAISKLEEA 61 (186)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHH------------------------HHHHHHHHHHHHHHH
T ss_conf 99999999999885298458889888899999986126447------------------------999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 00000000124577765433-----------2235543599999995389854788899
Q gi|254780592|r 165 LELSPNESSIVSNIAMSYLL-----------MGDLKTAEEKLRFASQMIGADSRIRQNL 212 (271)
Q Consensus 165 ~~~~p~~~~~~~~~~~~~~~-----------~g~~~~A~~~~~~al~~~p~~~~~~~~L 212 (271)
T Consensus 62 L~InP~khdalWclGNA~TS~~Fl~pD~~~A~~~F~kA~~~Fq~AvdeeP~NelYrKsL 120 (186)
T pfam06552 62 LVINPKKHDALWCIGNAYTSHAFLTPDQTEAKDNFDKATQFFQQAVDEQPDNDLYRKSL 120 (186)
T ss_pred HCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 71398875333300541101513178789999889999999999863498618999999