HHsearch alignment for GI: 254780592 and conserved domain: pfam10255

>pfam10255 Paf67 RNA polymerase I-associated factor PAF67. RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.

Probab=90.84  E-value=0.94  Score=22.28  Aligned_cols=96  Identities=10%  Similarity=0.024  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC-------CH--------HHHHHHHHHHHHCCHHHHHHHHHHHH--
Q ss_conf             87999999999987410012446665566327521-------00--------13555532100000112588764221--
Q gi|254780592|r   69 NKMIGIVYADVLRRVGRTAQALAVMRQVAILYPED-------QE--------VLAAYGKSLANAGYLDEGLDAINRAQ--  131 (271)
Q Consensus        69 ~~~~~~~~a~~l~~~g~~~~A~~~~~~al~~~p~~-------~~--------~~~~~~~~~~~~g~~~~A~~~~~~a~--  131 (271)
T Consensus        74 ~~~~VLn~L~sLv~kS~I~e~l~~~~~g--~~~~~~~~~~g~~~l~~~LGYFSlIgLlRlhvLLGDY~~Alk~L~~Idl~  151 (402)
T pfam10255        74 NVYSVLNVLYSLVDKSQIFEQLEAEKAG--EDPSEVADEYGSSNLYKMLGYFSIIGLLRVHVLLGDYYLALKVLEPIDLS  151 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf             3488999999999987389999987447--99355533556641999989999999999987005689999975241446


Q ss_pred             ------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             ------10000233566999999974211111000000000
Q gi|254780592|r  132 ------RPDIPDWQLISAKGSVLAQMGKHSEALIEYERALE  166 (271)
Q Consensus       132 ------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~  166 (271)
T Consensus       152 ~~~l~~kV~~~~vs~~YyvGFaYlMlrRY~DAir~f~~iL~  192 (402)
T pfam10255       152 KKGLYSKVPAAYVSLYYYVGFAYLMLRRYADAIRVFSQILI  192 (402)
T ss_pred             CCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32010247404021245889999998658999999999999